Spg008224 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg008224
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold2: 18495513 .. 18495881 (+)
RNA-Seq ExpressionSpg008224
SyntenySpg008224
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACATCCTCCAAACACCGGAGCTGCAATGGCAGCAGCAATGGCGGTGGTCGTGATTTTGACAGTGAGCGGAAGCAATTGCAGGGCTGCTTCTCTAAGTCGTCCCATTTCCCATTTCAGCAACGAGACCGAGGCGTCGATGTGGTGCGATGGCCGTGCCAAAGAATGCCTCGCCGGAGAAGCCGACGTTTTCTCAAGCATGGCAGCTGGTTCTCAGGAACCGGTGACTCCGGGCACCGGAAACCCGAATATACCTACATGTGGACGCCTGCAAAGTACAGATCCATATAAGAACTGTCTAGGTTCAGGAAACCCTAAGCCGAAAAAGGGAGAACATTGTGATCTATTTAATCGCGTCGGATGTTAG

mRNA sequence

ATGGCACATCCTCCAAACACCGGAGCTGCAATGGCAGCAGCAATGGCGGTGGTCGTGATTTTGACAGTGAGCGGAAGCAATTGCAGGGCTGCTTCTCTAAGTCGTCCCATTTCCCATTTCAGCAACGAGACCGAGGCGTCGATGTGGTGCGATGGCCGTGCCAAAGAATGCCTCGCCGGAGAAGCCGACGTTTTCTCAAGCATGGCAGCTGGTTCTCAGGAACCGGTGACTCCGGGCACCGGAAACCCGAATATACCTACATGTGGACGCCTGCAAAGTACAGATCCATATAAGAACTGTCTAGGTTCAGGAAACCCTAAGCCGAAAAAGGGAGAACATTGTGATCTATTTAATCGCGTCGGATGTTAG

Coding sequence (CDS)

ATGGCACATCCTCCAAACACCGGAGCTGCAATGGCAGCAGCAATGGCGGTGGTCGTGATTTTGACAGTGAGCGGAAGCAATTGCAGGGCTGCTTCTCTAAGTCGTCCCATTTCCCATTTCAGCAACGAGACCGAGGCGTCGATGTGGTGCGATGGCCGTGCCAAAGAATGCCTCGCCGGAGAAGCCGACGTTTTCTCAAGCATGGCAGCTGGTTCTCAGGAACCGGTGACTCCGGGCACCGGAAACCCGAATATACCTACATGTGGACGCCTGCAAAGTACAGATCCATATAAGAACTGTCTAGGTTCAGGAAACCCTAAGCCGAAAAAGGGAGAACATTGTGATCTATTTAATCGCGTCGGATGTTAG

Protein sequence

MAHPPNTGAAMAAAMAVVVILTVSGSNCRAASLSRPISHFSNETEASMWCDGRAKECLAGEADVFSSMAAGSQEPVTPGTGNPNIPTCGRLQSTDPYKNCLGSGNPKPKKGEHCDLFNRVGC
Homology
BLAST of Spg008224 vs. NCBI nr
Match: KAG6607071.1 (hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-08
Identity = 48/127 (37.80%), Postives = 66/127 (51.97%), Query Frame = 0

Query: 1   MAHPPNTGAAMAAAMAVVVILTVSGSNCRAASLSRPISHFSN--ETEASMWCDGRAKECL 60
           M H  N+G  MAAA   V IL +SGS+C  AS   P S+ +N     ASMWCDGR +EC+
Sbjct: 1   MGHSSNSGGVMAAAAMGVFILVLSGSDCNVAS-PTPSSYGNNTVAAAASMWCDGRVEECV 60

Query: 61  AGEAD---VFSSMAAGSQEPVTPGTGNPNIPTCGRLQSTDPYKNCLG--SGNPKPKKGEH 120
             E D    F S+   +++ ++P + N N   C R    D Y++C      NP P    +
Sbjct: 61  TREGDSASAFPSLQTSTRKYISPSSVNSNKAVCER---PDEYRSCFNPRRSNPNP---NN 120

BLAST of Spg008224 vs. NCBI nr
Match: KAG6607070.1 (hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-06
Identity = 49/128 (38.28%), Postives = 66/128 (51.56%), Query Frame = 0

Query: 1   MAHPPNTGAAMAAAMAV---VVILTVSGSNCRAASLSRPISHFSNET---EASMWCDGRA 60
           M H  N+GA MAAA A    V IL +SGS+C  AS +   S + N T    ASMWCDGR 
Sbjct: 1   MGHSSNSGAVMAAAAAAAMGVFILMLSGSHCSVASPTP--SSYGNITVAAAASMWCDGRV 60

Query: 61  KECLAGEAD---VFSSMAAGSQEPVTPGTGNPNIPTCGRLQSTDPYKNCLGSGNPKPKKG 120
           +EC+  E D    F S+ A + + ++  T N N P C R      YK+C  +      K 
Sbjct: 61  EECVTREDDGESAFPSLLASTPKFISFPTRNRNKPVCER---PGDYKSCFNARRTN-TKN 120

BLAST of Spg008224 vs. NCBI nr
Match: KAG6607014.1 (Protein PTST, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.4 bits (150), Expect = 3.1e-06
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 9  AAMAAAMAVVVILTVSGSNCRAASLSRPISHFSNETEA---SMWCDGRAKECLAGEADV- 68
          AAM AA+A +V+LT++ SN  AASLSR  S+F NET+A   S WCD R +ECL G+ DV 
Sbjct: 4  AAMMAAVAAIVVLTLAASNGNAASLSR--SNFGNETDAGAPSTWCDRRTEECLVGDDDVD 63

Query: 69 ---FSSMAAGSQEPVTPGTGNPNIP 87
             F S+A      ++  TGN N P
Sbjct: 64 GSDFLSLAFVDVSRISGRTGNENRP 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6607071.11.5e-0837.80hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607070.12.4e-0638.28hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607014.13.1e-0649.41Protein PTST, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg008224.1Spg008224.1mRNA