Spg008126 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg008126
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Locationscaffold1: 52687240 .. 52694565 (-)
RNA-Seq ExpressionSpg008126
SyntenySpg008126
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTCTAGTGAGATTGTGAGATCAGAGGATCGTGTGTGTTGTAAAGGAAAGTTGGGTGAATACCAGGTGCCTCGGGTAAAAATGGTCGAGGGGTGGTATGTCACCAATGGATTAAGAGGAGCATCGGGTGCCTTGGGTAATATGGCCAAGGGGCGATGTGATGAGTCTATACGTTATGAAAGTCATCGGGTGCCTTGGATAATATGGCCAAGGGGCGATGTACGGTTTGATTGTGAAGGCATCGGGTGCCTTGGGTAATATGGCCAAGGGGCGATGCACAGTTCGAGGCCTTGGGTAATATGGTCAATGGTCGAACGCTGAACGTCATAGAGAAATGTTGAGGCCCTGGGTAATATGGTCAGGGGTCGGCGTGACTCGAAGGAATCAGTCTCAGAGAGCCTATGAGGGCTACGAGTATTGAGTGAGCATGGCATGGTGCGGAATCCATGTGTTAGGTGCATCATTAGTTGCACGTTTACATAGTTGAGCATGTTGCGATATGTATGATGTTCACCTTGTATATAAGGCATGATAATGTGATTGTAAAACATGATTTTGCTATGTATGATGTATGATGCTTGATGGCTCTTCAGGTGTGAGCCACTTACTCAGTACCGTGGTTTTGTACTGACCCACTAACAGTAGTAAGTTTCACTTAACCATTTGATCTCTAGGCATTTTTCTATATTAGATCTAGGAAATTTTATATTAAATTAGCATGCTTGTTGCCTTTTTACAGAAGGTTTTATTTGATCTAATTTACTGTAATTTTTTTCGTCGTACCGATATTCAAATCGATAATTTAATTAGGTTTGATCTATGATAAGTCTTCTGCTGCGTGGGGCTTTAATCCCTACAATTGGTATCAGAGTCATCCCAATTTTAAACTTATGATTTAGAATTTGCGATTGGCTTGTAGGTGGGATTAGAATGCATAATGTATGTTAATTTGCTATGAACTAGAGGTTTCTTGGCCTTAGATTTACAATTTTTTGACTCGATCAAATGTAAAGGCCTCTGCGTTTTTGGGCGTTAAATTGTAAATTTTGAGTCTCTATAAGTTCGAGTCTAGTATAGGCTGAAGAACGATGAAGATCAAGATTAAATTTGGCCAAAAACGGCAGAAAACGGCAGCTGGAAGAGAAAAAAAAGGCAAAAAAGCGCGTCTGAGGTGAGGGTTGATGTCAGCGAGGGACACGCAGTCCAGGTTCGAGCTGTTCAGTTTGTTTTGGCATCCGGTTTGTTTTTTTTTGCACGCGGTTAAGCTCCTTGCACGCGGTTCAATGGCGGTTTAGCGGTTCTTTGATCGATTCGTTGACTTGGTCCGCGGTTTTGATGGATTCAGCGATTTTCTGATTGGTTCAAGCGGTTTTGACCCAATTTCAAGTGGTTTTGACCCGGTTTGAGCGATTTTGGCACGTTTGGAGCGGTTTTGGTCCGGTTTGGGGTTGCAGAAGGCTGTAATAGGATAGATTTTTGCTTTATTATTGTAATTTAAGCTTTAATTTTATCCTAGGGGTCAATTAACCGGTTCATATGCTGTTTTATATGCTTTATGGATGTCATATAATTTATAATCCCAACTTAGGTTATAAAGCATGCTCATGCATTTTTAATATATTATAATTAGTTATAATGTATGGATTAAAATGCATGTATGATTTTCATGAGATATTTAATGTATATGAGTTATATTAAATTCATGAAATTGGTCTTGTCAAAAAAAAAAAAAAAATTCATGAAATTGGAAAACATGATCATTGAAATTACTTAGTTAAATATAAAGAGTTATATTTAATAAGTTGTTTGCAGCATGCTACTATGATTTACCTTGATTGGCAATAATATAAATGTTATATTTATTAATAAGGAAATCAAAGTTGCATTGAGCATGAATCATCCACAGTCTTAATATAATTGTTATATTAAAATTCATGCCATGCAAATAATATAGTTTAATTTAATTAACTTGAATATGATTGTTAATTGTTTTAAACTATAGTATGCATGATTATAGGGCTAATCAGTAAAATTTGAATAGTTTAAAATTGATGAATAAAAATCGTCAATCTATAATCAAGATATGCATGCACACATAGGACCATAGGTTAAAATTGATTAATTTTAATGACTTAAAATTAATTAGACCTAAGGTCACATTTTAATAAGATTAGAATAATTTCTTACTTAGTTTTAAAAATAGTTTTAATCAACTAAGTAGGACAAACATTACAATGATTATAAGAGAACTCTACCAGTAATGTTCTGTCTAAGGTTGGGGGTGTTGGGTTTTATGCCCTAAAACTCATAGCTAGTGAATGTAAACAAATTGTATACTTGTTTCAATAAAGTGTTATTGAGTTTCTACAATAAAGTGTTATTGTTAAATATTGCACAATTTGACCCAAATCCAATAAACTAAGATCCAAAGTTGTCTGTATGTAACTTGAACTAGTATGTGAGGACATACGGGGATCAATGTTCAAGTAACAACCTAAGAGGTCTATAGTACAAGGATAAGGTTGGATACCTTATCCTGGTAACACTATGAGATACGCCCACTTTGTATTTGATACAGACGTATTGATCAATATCGTCCATGTAGTAGACATGCAAGAGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGAACCATGAAATAGTAAACCACTAGATATAACACCGTTAACTAGTTAGGTTACTGTTTAAATAGGATGACCTAGGTAACTCAGTCTTAATCCTGAGTGTGTCATGAACTCCTTCTCATGAGGGATTGTCCTTTGATTAGCATGGGTGAGAGTGGCCAATACACCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCGCACTTCTAGGAGAAGTAGATGAGTGTTCCCTTAAATGGTGACTCCAGGACTTGAACAAAGGGATCCCACCCTCTCACTAGCCCGAGAGAGACTTTCTGTTTATTGGTTGGACCATAAACAGGTTGTTCATTAGAGGAGCATTGGTAGTTAAGGAGACAGATGTAACACAGGGGTAAAACGATAATTTGACCCAACTGTGATTACAGACACTCGTGAAAGATTGACTTATCGATATAGGTCTATATCCGTGGACACAGAAATGTTCTACAGTGAGAAGAGTTCGACTGTGGCTCTTAAGTGGAGTGACCCACAGTTAATGAATATTGGTTAACCTGATTAATGAGTTTAATCAGTTAACCTCATATCATTGGAGCTTCTCATCTTGTAGCAGCCGGATTTAGAAAAAAAAAGAAAAAGAAAATAGGGGGGAAAAGGCGGGCACAAGCCCGGCCAAAAGAGTAAAAAAAAGGAAAATGGGGGGAAACTTCCCCCCAATTCGGTCAATTGACCGTGTATTAAAAAAAAAAAGTCAGATTTTTTTCTCTTTCTCACGCAACCCCCTCTCCCTCACGCTTTCTCTCTCCCTCTCTCGGCTCCATCTCCCTCACGCCCTCTCTCTCCGTCTGCAACCTCACCGCCGCCTGCAGCTCACCACCGACGTCGACGCCGCCGCCGCGCACAAGTCGCCGCCGGTGAGTGTTGTTTCGGTTATTTTTTTCTCTCTCTCTCGTTTCTTTCTCTCTCTAACCCGTTTCCCTTTCTCTCTCTCTCGCAACTTTCTCTCTCGGGTTGTAGGTCCGCTGCCGCTCGTCTCCTTGCCGCCCACAGCCAGCCGCCGCACGCTACCGCCATCTCGCCGCCGTGAATCGCTGCCATTCACCGTCTCCCGAAGTGCCGCCGCAGCCACTGCCACCCCCAGTTTCGTCTTTCGTTTCAGATCTGTTCGACGCCTTCAGCTAGTAGGTAAGGAAGTTGTAAGTGAGATTTAAGGGGGTTTTGGTCGATTTAATGTTTAAATATGGATACCCACTGATTTTAGTTTCAAATTGCAAGGTGCCCGTAGCGTTTGAAGGTCAAGTTGTCGAAGTTGATCGATTTTGAATTGCTGGACAGCAAGCTGTGCTTCTGTTTTGGGTGAGTTTTGGTTGTTAAATTACCTCCAAACTTAATGGGTTCCTAGTTGAATGCTTGGATTAGAGTCCCTATTTGATTGAGAGTTTCGTTCCTTGTTGTAGCTTGCTTAAGAGCCTTGGAGTTAAGAAATTTCTTGAAGGTTAATCCAATATCTTCTTCACTAAGGTAAGTAGCCCTTTGGAATAAAGTTTACGCCTTAAACTCATTTAAGTTGAGTATGGTTTATAATAGCATGAGCTAGATTTAATCCTTAAGTTGCCGCCCCTTGGAATTTAAGTAGCTAGTTGGATTCAAATTCCATGTTTTAAATGCATTGTATGGTAGCTGAACATGGTAGGTAATTCGCTGCGTTAGCATGAAATGTTTATGCATTGAAATGACTGTTGCTCCTAGCCTGAATTGGTATTAAAATTTTGGATTGAGATTGAGATGTCATGTATATGGTTGTTGTGCTGTGTGATGGGTGAAAGTGCTGGACTGTTTTATGTTATAAGTTGACTGGTGTTGTTTGTGGACAACGGGGAGTTTGTGTTGTATCTCTGTTTAGGAGTGTTGTTGTTGCCTTCGTTCTTGTTCTTGAGATTGTTGGGTAGGGATGATGCATATCAGTTTAGCCTATCAGTGTTCTCCGTAAAAGAAAAGGGTTTGGTTAACTGGGTTGCAGTCAAAATTAGCAGGTGTTAAGGGGGTCCTAAAGGGAAAAGGATTAAGAAAGGGAAAATAATAGGCTAGTTGCCTTAGAAGAAGGTCGTGTCGATTAAACACCTAGGACTGAGATGTAATAGACTGAAATGAGGGGCTTAATGGGCGGGACTTGGCTTCGCAGACTAGGTGCCATTTACTAACTGTGGAAGTTAATTTCTGACCTAAACCCATGAACGCCCCACCAGTGAAATGGTAGTTTAGAGCGCTACTCGCCCGTTAGTGCCTTGAGGGATGAGACTTAGCTCCACTGACTGGGTGCCTTCTACCATCAGTAGGAGTAGAGATCTCCCAAAACACCCACCTGTGCACTACCAGTGACTTGGCAAACTTATATGTAACGTTAATCGATCACGAGGCCCGAACTACAGATTAATGAAATGAAATGAATGAGAATGAGATGACCTAACCCTTAGGCCCTTAACTCGAATAAGATGTTAAAACTTTGATTGCTGCAAGTGTCTTGAAGTATTGCTACTTACTGAGTATTTTCTTAAGTACTCATTCTTTTCCCTTACATACAACTGCAGGTACAGGTAAAGGTGTACAGAACGCGTGACGGAGAGCTGCTGAGCCATGGATCTCCTTTAGGATAGTCTTCTGCATTTTGTGTTTTGAAATTCTTCTTTTGAACTTGTATTGTGAATGATTTAAGGTTTATTCTGCTTTAAGTTTTTGTGTGAATGGCTAAAGTGTTCTTCTGTTCTGTTTTAACTGGGATCCCAGGCTGAAAAGTTTCGCAAAACTTCTAAGTATGTTTTCTTTAAATGATATTTCCTCGCTGTTCTTAGAAGTAGAATGAAATGTATGTAGTAACGGCCCTAGGATCTAGGCATGAAAAGCTGGGTCGTTACACATCTGTAGGTCCATTAGGTCCCCCTGCTAGTTCGTAAAGAGTAATTAGGAACAATTATATCTTGAGAGAATTTGAATAGTTCAAATTCATATTGGGAATTAAGTTAATTGTATGAGATACAAATTAATATAATGTATAGTGATACATTAAAATGTAAAGTCTAATTTGAAATTAAACTTTATTATTATAAGAGAAATAAATATTTGAAAAAGTTCAAATATTAATATGAATTTGATTCATATTACATTTATAGGATATAAGAGAATTTGAAGGAGTTCAAATTTTAATATGAATTTGATTCATATTATAGAATTAATTAATTGAAGGCCTGAAATTAAATATATGATATTTAATTGGACAATTAATTAATTAACTAATAGAAGGTCTGAAATTAAATATATGATATTTAATTGGTGATTAATTAATTAAAGAATTAATTAATTGGAAATTAATCAATTTTGGAAATGATTAATCACTTATGGAAGTAATTAATCATTTATGGAAATGATTTAATCACTTATGGAAGTGATCAATCATTTATGGAAAAGATTAATCAATTATGGAATTGATTAATTATGGAAAAGATTAAACCAGTTATGGAAATAATTGATTTTAAATGAATATTTTATTCATGGCCTTTCTCCTATAAATAGAACACTAAACCTAGGGTTTAGGTATTATAAAATATGGCCACCATAAGGTCATTCTTGTCTCCCTCTCACATTCTGTCAACCCAAGAACTCTAGGGAGAATTTTCTCTCTAGAGTTTTTCCCATTCAAGATTAGGTAGTCTCACAACTACGTTCCTAATCTCAAAGTTATAGCGGGGAAGATCAATTGGTGGTGTTCTAATTCTTGACGCTTTGTCCAAATCAAGAAAGACGTTCTTGATATTTCTGAGACGACAACGACTGTATGTATGCTTCTCTCTATTAGATTTAGATCTAATAATTTTTGTATGTTTAGCCTTAAGTTTCTATAGAATATGTTCTGTAAACTTTTACCAATGTAATGGTATTTTAGATAAACAAAATTAACTACGAATCGGTCCCAATTCGCTTCCGCTGGAATTCCAATCCTACAATTGGTATCAGAGCCGATCGTAGATCTAATTTTGTTTCTCTGAAATTTGCATTGGCTAATGGTGGGATTTAATTTTACATTGGATGTATGAATGGTTTGCTAGTAGATGTTTAAGGTTTTGGCATTAGTTTTGCAATTTTTCCGTTGATTTGATCAATGTAAGGGCCCTTTGTTTTGGGCATTTTAATTGCAATCAAGTCTGTAAGTTTGTGTCATTTCAATTTTATGATTTGCGACAAAGAATTGAAGAAAATTGGGCAAAAATCGGATCAAATCAGTGGCTGGAATTTCAGTACAGGTGTAAAAAAAAAAAAGGAAAACCGCGTCCAGTTGAGGTCAAACTCGAACGTGAGGGGATGATCACATGCGGAACGTGAATGGATATACCACTGAAGCATGAGCGATTTTTTGACTTCAATCAGCTATTTTGTAATGTTGTTGCGCGTGAGTTCGTGAGATGGGTCCGGTTCGTGGTTGAGGCGCGGTTCACTCGGTTCATGGATCTTTGACCGGTTCGCATTGGTTTGGCACGATTCAAGCGGCTGTTGACTGGTCCGTGGACTGTTTGACCTGGTTCAGTGCGGTTCAGCTTGGTCTGGGCATTTTTGGAGTTGGTTCATGCAGTCTGAAGCTGGTTCGAGCTAGTTGA

mRNA sequence

ATGCATTCTAGTGAGATTGTGAGATCAGAGGATCGTGTGTGTTGTAAAGGAAAGTTGGGTGAATACCAGGTGCCTCGGGTAAAAATGGTCGAGGGGTGGTATGTCACCAATGGATTAAGAGGAGCATCGGGTGCCTTGGGTAATATGGCCAAGGGGCGATGTGATGAGTCTATACGTTATGAAAGTCATCGGGTGCCTTGGATAATATGGCCAAGGGGCGATGTACGGTTTGATTGTGAAGGCATCGGGTGCCTTGGGTGTGAGCCACTTACTCAGTACCGTGCATGGGTGAGAGTGGCCAATACACCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCGCACTTCTAGGAGAAGTAGATGAGTGTCCGCTGCCGCTCGTCTCCTTGCCGCCCACAGCCAGCCGCCGCACGCTACCGCCATCTCGCCGCCGTGAATCGCTGCCATTCACCGTCTCCCGAAGTGCCGCCGCAGCCACTGCCACCCCCAGTTTCGTCTTTCGTTTCAGATCTGTTCGACGCCTTCAGCTAGTAGCTTGCTTAAGAGCCTTGGAGTTAAGAAATTTCTTGAAGGTTAATCCAATATCTTCTTCACTAAGGGATGATGCATATCAGTTTAGCCTATCAGTGTTCTCCGTAAAAGAAAAGGGTTTGGTTAACTGGGTTGCAGTCAAAATTAGCAGGTACAGATCAATTGGTGGTGTTCTAATTCTTGACGCTTTGTCCAAATCAAGAAAGACGTTCTTGATATTTCTGAGACGACAACGACTTGCGGTTCAGCTTGGTCTGGGCATTTTTGGAGTTGGTTCATGCAGTCTGAAGCTGGTTCGAGCTAGTTGA

Coding sequence (CDS)

ATGCATTCTAGTGAGATTGTGAGATCAGAGGATCGTGTGTGTTGTAAAGGAAAGTTGGGTGAATACCAGGTGCCTCGGGTAAAAATGGTCGAGGGGTGGTATGTCACCAATGGATTAAGAGGAGCATCGGGTGCCTTGGGTAATATGGCCAAGGGGCGATGTGATGAGTCTATACGTTATGAAAGTCATCGGGTGCCTTGGATAATATGGCCAAGGGGCGATGTACGGTTTGATTGTGAAGGCATCGGGTGCCTTGGGTGTGAGCCACTTACTCAGTACCGTGCATGGGTGAGAGTGGCCAATACACCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCGCACTTCTAGGAGAAGTAGATGAGTGTCCGCTGCCGCTCGTCTCCTTGCCGCCCACAGCCAGCCGCCGCACGCTACCGCCATCTCGCCGCCGTGAATCGCTGCCATTCACCGTCTCCCGAAGTGCCGCCGCAGCCACTGCCACCCCCAGTTTCGTCTTTCGTTTCAGATCTGTTCGACGCCTTCAGCTAGTAGCTTGCTTAAGAGCCTTGGAGTTAAGAAATTTCTTGAAGGTTAATCCAATATCTTCTTCACTAAGGGATGATGCATATCAGTTTAGCCTATCAGTGTTCTCCGTAAAAGAAAAGGGTTTGGTTAACTGGGTTGCAGTCAAAATTAGCAGGTACAGATCAATTGGTGGTGTTCTAATTCTTGACGCTTTGTCCAAATCAAGAAAGACGTTCTTGATATTTCTGAGACGACAACGACTTGCGGTTCAGCTTGGTCTGGGCATTTTTGGAGTTGGTTCATGCAGTCTGAAGCTGGTTCGAGCTAGTTGA

Protein sequence

MHSSEIVRSEDRVCCKGKLGEYQVPRVKMVEGWYVTNGLRGASGALGNMAKGRCDESIRYESHRVPWIIWPRGDVRFDCEGIGCLGCEPLTQYRAWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLGEVDECPLPLVSLPPTASRRTLPPSRRRESLPFTVSRSAAAATATPSFVFRFRSVRRLQLVACLRALELRNFLKVNPISSSLRDDAYQFSLSVFSVKEKGLVNWVAVKISRYRSIGGVLILDALSKSRKTFLIFLRRQRLAVQLGLGIFGVGSCSLKLVRAS
Homology
[Close]
BLAST of Spg008126 vs. NCBI nr
Match: KAA0065950.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK30278.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-06
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 97  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLG 135
           VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSF LLG
Sbjct: 97  VRVARLPTQYAYHFGDKTEWGAGNIITQDGIHSFPLLG 134

[Close]
BLAST of Spg008126 vs. NCBI nr
Match: TYK27885.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-06
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 96  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLGEVDECPL 142
           ++RVA  PTQYA+ F DKTEW AG++ TQ+GIH F  LG VD+C L
Sbjct: 83  YIRVAKFPTQYAYHFEDKTEWGAGNIITQDGIHFFPPLGYVDKCSL 128

[Close]
BLAST of Spg008126 vs. NCBI nr
Match: KAA0040839.1 (uncharacterized protein E6C27_scaffold333G00600 [Cucumis melo var. makuwa] >TYK17815.1 uncharacterized protein E5676_scaffold306G00640 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-05
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 0 

Query: 94  RAWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLGEV 137
           R  VRVA  PTQYA+ FGDKT+W AG++ TQ+ IHSFA LG +
Sbjct: 23  RVKVRVAKLPTQYAYHFGDKTKWGAGNIITQDEIHSFATLGSI 65

[Close]
BLAST of Spg008126 vs. NCBI nr
Match: KAA0025994.1 (retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-05
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 97  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLG 135
           VRVA  PTQYA+ FGDKTEW AG+  TQ+GIHSF  LG
Sbjct: 223 VRVARLPTQYAYHFGDKTEWGAGNTITQDGIHSFPPLG 260

[Close]
BLAST of Spg008126 vs. NCBI nr
Match: KAA0043328.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 3.8e-05
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 0 

Query: 96  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLGEV 137
           ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSF  LG +
Sbjct: 168 YIRVAKLPTQYAYHFEDKTEWGAGNIITQDGIHSFPPLGSI 208

[Close]
BLAST of Spg008126 vs. ExPASy TrEMBL
Match: A0A5A7VFG5 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00390 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.7e-07
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 97  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLG 135
           VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSF LLG
Sbjct: 97  VRVARLPTQYAYHFGDKTEWGAGNIITQDGIHSFPLLG 134

[Close]
BLAST of Spg008126 vs. ExPASy TrEMBL
Match: A0A5D3DX33 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00690 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-06
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 96  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLGEVDECPL 142
           ++RVA  PTQYA+ F DKTEW AG++ TQ+GIH F  LG VD+C L
Sbjct: 83  YIRVAKFPTQYAYHFEDKTEWGAGNIITQDGIHFFPPLGYVDKCSL 128

[Close]
BLAST of Spg008126 vs. ExPASy TrEMBL
Match: A0A5A7THR9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00640 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.3e-06
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 0 

Query: 94  RAWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLGEV 137
           R  VRVA  PTQYA+ FGDKT+W AG++ TQ+ IHSFA LG +
Sbjct: 23  RVKVRVAKLPTQYAYHFGDKTKWGAGNIITQDEIHSFATLGSI 65

[Close]
BLAST of Spg008126 vs. ExPASy TrEMBL
Match: A0A5A7SJY0 (Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003160 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-05
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 97  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLG 135
           VRVA  PTQYA+ FGDKTEW AG+  TQ+GIHSF  LG
Sbjct: 223 VRVARLPTQYAYHFGDKTEWGAGNTITQDGIHSFPPLG 260

[Close]
BLAST of Spg008126 vs. ExPASy TrEMBL
Match: A0A5A7TKJ4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002390 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-05
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 0 

Query: 96  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLGEV 137
           ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSF  LG +
Sbjct: 168 YIRVAKLPTQYAYHFEDKTEWGAGNIITQDGIHSFPPLGSI 208

The following BLAST results are available for this feature:
BLAST of Spg008126 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065950.12.0e-0673.68ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK30278.1 ty1-cop... [more]
TYK27885.12.6e-0660.87retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m... [more]
KAA0040839.11.3e-0562.79uncharacterized protein E6C27_scaffold333G00600 [Cucumis melo var. makuwa] >TYK1... [more]
KAA0025994.12.2e-0571.05retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa][more]
KAA0043328.13.8e-0560.98gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of Spg008126 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg008126 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VFG59.7e-0773.68Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3DX331.3e-0660.87Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var.... [more]
A0A5A7THR96.3e-0662.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SJY01.1e-0571.05Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa... [more]
A0A5A7TKJ41.8e-0560.98Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G0023... [more]
BLAST of Spg008126 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg008126.1Spg008126.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding