Spg008091 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008091
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Vacuolar protein sorting-associated protein 18-like protein
Location	scaffold4: 7379835 .. 7381651 (-)
RNA-Seq Expression	Spg008091
Synteny	Spg008091

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATGGACACGAGACACGGATATGACACGACACGGACACGGTGACACGCCATTTTTTTAAAATCTAGGACATGGACACGGTATGGACACACTCAGTAAAATATACATTTTTTAAAATATATATCATTTTTATACAAGAAGGAAATTCAAAATCAATAAGCTTATGCATTTGTATGCTTAAAAAAATGAGTTTAATGTATTTCATTCTTAAAATTTATTATTTTTTTCATTTAGTATTATGCCTATTTAGTATACTTAGTGTTCGACATAGACCTATATTGACTTTGTACATCAACTATGCTAACAAGTGTCGGAGTGTCCAAGTTTCCGACATGTGTCGGACACGGACACACTAGCCAAACTAAAGTGTCTGTGCTTCTTAGATGGAGACCAAGAAGAGAGTTTGAGAAATGATCTGGATTTCACCTATCTATAATTATAACATCTACAGAGTATCCTCAGCAGTGTTGATTGGATCAGCAGGCCAGAAGCAAAAACTCTATAGCCATGAATTCTAATTTGGACATGCATATCCCTTACCTTCAGAACTTATAGTAAATAATATGGAGTAAAAACATTTCCAAGCCACCGGAGTATTACAAAATTGTGTGAACAACACAAAGGCTTACATTGAGAATTCAAAACCAATGGACAAACTTTCGTTTTGATCATGACATTGTTTCATTCCCCATAGAAATGGCAAGACAACACGCACAGACAAATCAACAAATTCCTCGGTTCAATCTAATTGGTAAACACAGTTCATAGCAAAACCATCCAATTTCCCGGAGCAGAACTACACAAACAAACAAAATGGAAGAAATTTAGAGGTTCCACATACAGTGTTCGAGAAATGTAGAACATTCCAGGTAGACAGCAAGTTCCTAAACCGACATGACCCGCCAGAACTGAAATCGAAAATGTAAGTAAATGCGAAAGCGGTTCGAACCACACAATTGGTATCAGCAACAAGCCTCAAGTACCTGGACATGGTTATCATGCTCGATTCCGGACGGCGAACACCGCCGTCGGTGGTCCAGAGAGAACAAAAGAAACAACAATCGCTGTTATTAGAGTCGTGCAAGCTTCTGTAGCCGGTGAAAATGGCCTTGAACAGATAGTTCCCAGAAGGAATAGGGTTTTTCGATCTGTGCCGAGTCTTCTGGGTTTGAGTCGTGGAAGCTTCTGTAGCTGGTAATCGTTTTCTTATTTAAATTATAGCCTTTATTTTAACTAAACGAAACGGTTCAATTGAACCGGTTTGTGAAACAAAATAGAACCGTCGGTTCGATTCTGGAGAAGACCGAACCGAACCTAACCGTGCACACTGGAATTTGCAGTAATACGGTGCGTTTGAGAACTCCAGCAGCGGAAAGAGTGGATATCATATGGTCAAACAGTGAAATCACATTAAATTTCTTCCCGCAAATTAACGGTGCGATCGCCGACGAACTGCTCCTCGGAGTAGAATTTCCCGGCAATTTGTCTAGGATTTGTCTGGCCCGAAACTTGAACTCTCTGAGCTTCGAGAAATGGATTCAGGGAGGCCGGCGTTCACCGTCGATCTTCTAGAAAGGTATGCGGCCAAAGGGAGGGGAGTTATCAGCTGCATGGCCGCTGGGAATGATGTCATTTTGTTAGGCACCAGCAAAGGTTGGGTCACCCGCTATGACTTTGGAGTTGGAGACTCGATCGGTATGATTCTCCATCTTCTGCTAATTACTTGTATGCGATCTAATCTAATTACTTTTGGACAATCGAAAAGGTTTGGCTCGATCGTTTATGTTTTTGTGTTGGGATATCATTTCGCCTAA

mRNA sequence

ATGGATATGGACACGAGACACGGATATGACACGACACGGACACGCGGTTCGAACCACACAATTGGTATCAGCAACAAGCCTCAAGTACCTGGACATGGTTATCATGCTCGATTCCGGACGGCGAACACCGCCGTCGGTGGTCCAGAGAGAACAAAAGAAACAACAATCGCTGTTATTAGAGTCGTGCAAGCTTCTGTAGCCGGTGAAAATGGCCTTGAACAGATAGTTCCCAGAAGGAATAGGGTTTTTCGATCTGTGCCGAGTCTTCTGGGTTTGAGTCGTGGAAGCTTCTGTAGCTGTAATACGGATTTGTCTGGCCCGAAACTTGAACTCTCTGAGCTTCGAGAAATGGATTCAGGGAGGCCGGCGTTCACCGTCGATCTTCTAGAAAGGTATGCGGCCAAAGGGAGGGGAGTTATCAGCTGCATGGCCGCTGGGAATGATGTCATTTTGTTAGGCACCAGCAAAGGTTGGGTCACCCGCTATGACTTTGGAGTTGGAGACTCGATCGGTATGATTCTCCATCTTCTGCTAATTACTTGTATGCGATCTAATCTAATTACTTTTGGACAATCGAAAAGGTTTGGCTCGATCGTTTATGTTTTTGTGTTGGGATATCATTTCGCCTAA

Coding sequence (CDS)

ATGGATATGGACACGAGACACGGATATGACACGACACGGACACGCGGTTCGAACCACACAATTGGTATCAGCAACAAGCCTCAAGTACCTGGACATGGTTATCATGCTCGATTCCGGACGGCGAACACCGCCGTCGGTGGTCCAGAGAGAACAAAAGAAACAACAATCGCTGTTATTAGAGTCGTGCAAGCTTCTGTAGCCGGTGAAAATGGCCTTGAACAGATAGTTCCCAGAAGGAATAGGGTTTTTCGATCTGTGCCGAGTCTTCTGGGTTTGAGTCGTGGAAGCTTCTGTAGCTGTAATACGGATTTGTCTGGCCCGAAACTTGAACTCTCTGAGCTTCGAGAAATGGATTCAGGGAGGCCGGCGTTCACCGTCGATCTTCTAGAAAGGTATGCGGCCAAAGGGAGGGGAGTTATCAGCTGCATGGCCGCTGGGAATGATGTCATTTTGTTAGGCACCAGCAAAGGTTGGGTCACCCGCTATGACTTTGGAGTTGGAGACTCGATCGGTATGATTCTCCATCTTCTGCTAATTACTTGTATGCGATCTAATCTAATTACTTTTGGACAATCGAAAAGGTTTGGCTCGATCGTTTATGTTTTTGTGTTGGGATATCATTTCGCCTAA

Protein sequence

MDMDTRHGYDTTRTRGSNHTIGISNKPQVPGHGYHARFRTANTAVGGPERTKETTIAVIRVVQASVAGENGLEQIVPRRNRVFRSVPSLLGLSRGSFCSCNTDLSGPKLELSELREMDSGRPAFTVDLLERYAAKGRGVISCMAAGNDVILLGTSKGWVTRYDFGVGDSIGMILHLLLITCMRSNLITFGQSKRFGSIVYVFVLGYHFA

Homology

[Close]

BLAST of Spg008091 vs. NCBI nr
Match: XP_004136806.1 (vacuolar sorting protein 18 [Cucumis sativus] >KGN43582.1 hypothetical protein Csa_020462 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-20
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 117 MDSGRPAFTVDLLERYAAKGRGVISCMAAGNDVILLGTSKGWVTRYDFGVGDSI 171
           M+ GRPAFTVDLLERYAAKGRGVISCMAAGNDVI+LGTSKGWVTRYDFGVGDSI
Sbjct: 1   MEQGRPAFTVDLLERYAAKGRGVISCMAAGNDVIMLGTSKGWVTRYDFGVGDSI 54

[Close]

BLAST of Spg008091 vs. NCBI nr
Match: XP_008455352.1 (PREDICTED: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 18 homolog [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-20
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 117 MDSGRPAFTVDLLERYAAKGRGVISCMAAGNDVILLGTSKGWVTRYDFGVGDSI 171
           M+ GRPAFTVDLLERYAAKGRGVISCMAAGNDVI+LGTSKGWVTRYDFGVGDSI
Sbjct: 1   MEQGRPAFTVDLLERYAAKGRGVISCMAAGNDVIMLGTSKGWVTRYDFGVGDSI 54

[Close]

BLAST of Spg008091 vs. NCBI nr
Match: TYK07051.1 (vacuolar protein sorting-associated protein 18-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-20
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 117 MDSGRPAFTVDLLERYAAKGRGVISCMAAGNDVILLGTSKGWVTRYDFGVGDSI 171
           M+ GRPAFTVDLLERYAAKGRGVISCMAAGNDVI+LGTSKGWVTRYDFGVGDSI
Sbjct: 1   MEQGRPAFTVDLLERYAAKGRGVISCMAAGNDVIMLGTSKGWVTRYDFGVGDSI 54

[Close]

BLAST of Spg008091 vs. NCBI nr
Match: KAA0031599.1 (vacuolar protein sorting-associated protein 18-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-20
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 117 MDSGRPAFTVDLLERYAAKGRGVISCMAAGNDVILLGTSKGWVTRYDFGVGDSI 171
           M+ GRPAFTVDLLERYAAKGRGVISCMAAGNDVI+LGTSKGWVTRYDFGVGDSI
Sbjct: 1   MEQGRPAFTVDLLERYAAKGRGVISCMAAGNDVIMLGTSKGWVTRYDFGVGDSI 54

[Close]

BLAST of Spg008091 vs. NCBI nr
Match: XP_023511653.1 (vacuolar protein sorting-associated protein 18 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-20
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 117 MDSGRPAFTVDLLERYAAKGRGVISCMAAGNDVILLGTSKGWVTRYDFGVGDSI 171
           MD GRPAFTVDLLERYAAKGRGVISCM+AGNDVILLGTSKGWVTRYDFG+GDSI
Sbjct: 1   MDPGRPAFTVDLLERYAAKGRGVISCMSAGNDVILLGTSKGWVTRYDFGMGDSI 54

[Close]

BLAST of Spg008091 vs. ExPASy Swiss-Prot
Match: F4IDS7 (Vacuolar sorting protein 18 OS=Arabidopsis thaliana OX=3702 GN=VPS18 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.7e-18
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 117 MDSGRPAFTVDLLERYAAKGRGVISCMAAGNDVILLGTSKGWVTRYDFGVGDS 170
           MD GR  F+VDLLERYA K RG+I+CMAAGNDVI+LGTSKGW+ RYDFGVG S
Sbjct: 1   MDQGRQVFSVDLLERYATKNRGMITCMAAGNDVIVLGTSKGWIIRYDFGVGSS 53

[Close]

BLAST of Spg008091 vs. ExPASy TrEMBL
Match: A0A5A7SQQ7 (Vacuolar protein sorting-associated protein 18-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G003670 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.4e-21
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 117 MDSGRPAFTVDLLERYAAKGRGVISCMAAGNDVILLGTSKGWVTRYDFGVGDSI 171
           M+ GRPAFTVDLLERYAAKGRGVISCMAAGNDVI+LGTSKGWVTRYDFGVGDSI
Sbjct: 1   MEQGRPAFTVDLLERYAAKGRGVISCMAAGNDVIMLGTSKGWVTRYDFGVGDSI 54

[Close]

BLAST of Spg008091 vs. ExPASy TrEMBL
Match: A0A5D3C570 (Vacuolar protein sorting-associated protein 18-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003690 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.4e-21
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 117 MDSGRPAFTVDLLERYAAKGRGVISCMAAGNDVILLGTSKGWVTRYDFGVGDSI 171
           M+ GRPAFTVDLLERYAAKGRGVISCMAAGNDVI+LGTSKGWVTRYDFGVGDSI
Sbjct: 1   MEQGRPAFTVDLLERYAAKGRGVISCMAAGNDVIMLGTSKGWVTRYDFGVGDSI 54

[Close]

BLAST of Spg008091 vs. ExPASy TrEMBL
Match: A0A0A0K5N6 (Pep3_Vps18 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G046700 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.4e-21
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 117 MDSGRPAFTVDLLERYAAKGRGVISCMAAGNDVILLGTSKGWVTRYDFGVGDSI 171
           M+ GRPAFTVDLLERYAAKGRGVISCMAAGNDVI+LGTSKGWVTRYDFGVGDSI
Sbjct: 1   MEQGRPAFTVDLLERYAAKGRGVISCMAAGNDVIMLGTSKGWVTRYDFGVGDSI 54

[Close]

BLAST of Spg008091 vs. ExPASy TrEMBL
Match: A0A1S3C0V2 (LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 18 homolog OS=Cucumis melo OX=3656 GN=LOC103495539 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.4e-21
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 117 MDSGRPAFTVDLLERYAAKGRGVISCMAAGNDVILLGTSKGWVTRYDFGVGDSI 171
           M+ GRPAFTVDLLERYAAKGRGVISCMAAGNDVI+LGTSKGWVTRYDFGVGDSI
Sbjct: 1   MEQGRPAFTVDLLERYAAKGRGVISCMAAGNDVIMLGTSKGWVTRYDFGVGDSI 54

[Close]

BLAST of Spg008091 vs. ExPASy TrEMBL
Match: A0A6J1HZJ9 (vacuolar protein sorting-associated protein 18 homolog OS=Cucurbita maxima OX=3661 GN=LOC111468106 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 8.3e-21
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 117 MDSGRPAFTVDLLERYAAKGRGVISCMAAGNDVILLGTSKGWVTRYDFGVGDSI 171
           MD GRPAFTVDLLERYAAKGRGVISCM+AGNDVILLGTSKGWVTRYDFG+GDSI
Sbjct: 1   MDPGRPAFTVDLLERYAAKGRGVISCMSAGNDVILLGTSKGWVTRYDFGMGDSI 54

[Close]

BLAST of Spg008091 vs. TAIR 10
Match: AT1G12470.1 (zinc ion binding )

HSP 1 Score: 93.2 bits (230), Expect = 2.7e-19
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 117 MDSGRPAFTVDLLERYAAKGRGVISCMAAGNDVILLGTSKGWVTRYDFGVGDS 170
           MD GR  F+VDLLERYA K RG+I+CMAAGNDVI+LGTSKGW+ RYDFGVG S
Sbjct: 1   MDQGRQVFSVDLLERYATKNRGMITCMAAGNDVIVLGTSKGWIIRYDFGVGSS 53

The following BLAST results are available for this feature:

BLAST of Spg008091 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136806.1	1.3e-20	94.44	vacuolar sorting protein 18 [Cucumis sativus] >KGN43582.1 hypothetical protein C...	[more]
XP_008455352.1	1.3e-20	94.44	PREDICTED: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 18 h...	[more]
TYK07051.1	1.3e-20	94.44	vacuolar protein sorting-associated protein 18-like protein [Cucumis melo var. m...	[more]
KAA0031599.1	1.3e-20	94.44	vacuolar protein sorting-associated protein 18-like protein [Cucumis melo var. m...	[more]
XP_023511653.1	1.7e-20	94.44	vacuolar protein sorting-associated protein 18 homolog [Cucurbita pepo subsp. pe...	[more]

BLAST of Spg008091 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IDS7	3.7e-18	77.36	Vacuolar sorting protein 18 OS=Arabidopsis thaliana OX=3702 GN=VPS18 PE=1 SV=1	[more]

BLAST of Spg008091 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQQ7	6.4e-21	94.44	Vacuolar protein sorting-associated protein 18-like protein OS=Cucumis melo var....	[more]
A0A5D3C570	6.4e-21	94.44	Vacuolar protein sorting-associated protein 18-like protein OS=Cucumis melo var....	[more]
A0A0A0K5N6	6.4e-21	94.44	Pep3_Vps18 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G046700 ...	[more]
A0A1S3C0V2	6.4e-21	94.44	LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 18 homolog OS=C...	[more]
A0A6J1HZJ9	8.3e-21	94.44	vacuolar protein sorting-associated protein 18 homolog OS=Cucurbita maxima OX=36...	[more]

BLAST of Spg008091 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12470.1	2.7e-19	77.36	zinc ion binding	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR23323	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN	coord: 117..172
None	No IPR available	PANTHER	PTHR23323:SF27	BNACNNG33440D PROTEIN	coord: 117..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008091.1	Spg008091.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007032	endosome organization
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0048284	organelle fusion
biological_process	GO:0010015	root morphogenesis
biological_process	GO:0007033	vacuole organization
biological_process	GO:0006904	vesicle docking involved in exocytosis
cellular_component	GO:0033263	CORVET complex
cellular_component	GO:0030897	HOPS complex
cellular_component	GO:0009705	plant-type vacuole membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0030674	protein-macromolecule adaptor activity