Spg008048 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008048
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	60S acidic ribosomal protein P3-2
Location	scaffold4: 7217343 .. 7220304 (+)
RNA-Seq Expression	Spg008048
Synteny	Spg008048

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCGAGAGAAGCTATTTCTCCCGACACCAAGAAAACGACGTCGGGAGAAACACAATGGAAATACTTTCTCTCGACGCCCTAAGACGGCGTCGGCAAAAACGCTACCTTTCTCGACGTCGAGAGAAATGGTATCTCTCTCGACGCTATTAAGACGGCGTCAAGAGAAAGGGTATCTCTCTTAACGCCATTAAGACGGCGTCGGCAGAAACGCTACCTCTCTCGACGCTGTCTTGACGGCGACGAGAGAGGTACCCTTTCTCTCGACGCCGTTAGTAACGGCGTCGGCAGAAAACTAGGCAAAATAAAAAGCCCTAAAACGTTTCCCCTTTCCCTTCTATTTCAACCGCCCCTACCTCGAGCTCTCTCTTCTCCAAACCAAGTCGCCGTTTCCTGTCCCACCGTCTCCTCGCCTACCGTCGTCTCGTGCGCCGTCGTCCGTCGCCGCCTCACTCGCCGTCGACTGTGCTTTTGAAGTTGAAATCGGTATTTCCTCAACCCTTCATAGATGATGTAGAGTTCTAATTGGAATTACAATTAACAATAGATACAAGAGATGATGAATCATCCTCATTCAAAATGCCATCAAAATCAAGAATGTTTGATTTGAAAATGCACTTTTGTTTTTTTTAAAGTTCTGCTTGATGTTGGATTTCATTCTTTTTGGTATAAGAACAGAACCAAACTGTTCAACATAGACCGAACTGTACTTGCAGGTGCTCCTTTGTTGGACTTGAGGGCCTTGGGCATTTTGGCTAAAAGATTTTGGTTGCGGTTTCTCGTCATCCTCGATGAATCATTTGGTTTGTCCTTAACAAATTATTTTCCTTTTTCTTCCTAGTTTTTATGATAATTATCCAAACTCCTTGGTGTTAAGTCATATATAATTAAACACTATTTAAATGAAGATCCCTACGGTTTCACTTAGTTTAAATTTGAAGAAAACAATATTTTTATGTGTAGAGAATGGAAAAAGGGAAACATGGTTATTGTGGGTAATGGAAACTTAAGTTTTTTATCTCTTTTTTGAATTCCTCCTTGGAGTTTTTTGTTAGGGCCTTTCATTGTCGTTCCCATGTGCTGATTTCTTTTGTTTGTTCTATGTATGCTCAATTTAGATGAATTTTTTGTTGCGGTTTAAAAAGAACTTTAGTTTGAAGTTTTAGCTCATTGTTGAAAATTACTTGAAATTAGTTTAACTCGAGTTTATATATGTTGGTTGGTTTGTTGCTATCCTGCAGTTATGGTAGCAAATGAATATGGTTGTTTAAATTTGTTGTTATCTTAGTTCTATATATAGTTTAGGAGCCTATTAACTCATGTAGCAATATCTTAATGTTCTTACTTATGAATGTGCATATGTATGTTTATCATTTCTCTTTTCTATTTCAAACAAAGGTTAAATTGGTTGTTAGTTCATGAATGATTTGTTTAGTTTAATATGTTTATTGTTTGGCCCTAATTTAAGTTTAATGGTTTGTTTATTTTCATGTGTTGGTTCAAGTCTCTTGATGTTAAAAGTTCATTAGCTTTGAAAAGTTGAAGTTAAATTTAGTTCTTAGGTTCATGTTTTTATTTATCAAACTATTAGTTTTGTGGTTTTTCAAACTTAACCTTGGATTTTTTTTTTTTTTACTTTGTGATTCAGTTTTGTTTCGAGGCGTTTGAATAGTTGAACCGAGATTTTGGGTAAGATTATGCCTTTTGAATGCTCTTTTAGCTTCAGTTTATATTGTTGCTATCCTGCAGCTATGGTAGCAAATGATATTGTAGTTAGTTTTTTTTTTTTTTTAAGCTAGAGTTTATAGTTATTGTGTTTTAGTTGGTGGTAAGAGAGATACGCATGACTATATTTTATAAGTTCTTAAGTTATTTGAGTTCTTTGTTGGTTATAATTATTGTGTTTCATTGAATTTGTTCGATTGTAGTGTATCTTGTTGCTATCATGCAGTTACGGTAGCAAATTTGGAATCATTGAGTGATCAGCTTGTTGCTATCCTGCAGTTATGGTAGCAAATCCTTATGTTTCGTTCTTCAATGATGGGGGGGGGGGTCATAAGTCTTAGTTTGAGATAATGTTCGATTTTGTTAATTGTTGTTTGGTCTTGGAGAACTTGGTTTTCGTTAATTGTTGTTTGATTTTAATTGAAACCTAGAGATGGTTTAAAGTGTAAGTTTACACCTAGAGATGAGTTTAATTGAAACCTAGAGATGGTTTCGTTAATTGGTGCTTGATTTTAATTTAAACCTAGAGATGACCTTTTATGTGGTTAAAGTGTGATTGTAAGTTTACGTGTGTGATTATACTATAATTTTGAGTCTATTGTGTGTTTAAAGTGTAATTTGAAGCATATTATGTGCGATTATAAAGTGTGTTTTGGAGGCTTTTTATATGGTTGAAGTTCAATTATGAGTTTCTTTTGTGTGATTAGTTAATGTGTGATTGTAAGCTTATTTGTGTGACTATATTATGATTTTGAGTCATTTGTGTGCTTAAAGTGTGATTTGGGAATTTCAAGGCTTTGATCATGACAAGGGTAGCAATGTTTTTGGTGTTTTATAATGTTTATGTTTGTTTCATGCTTTGTGTAGTATGAGAAGAATCAGCAAGTTGACATTTTTTTTGTGGTGTTATTTGCATTAGGTTTATATAAAGACTTTCTGTTTGGAATTAGACTTACAAGAGTTTGATTTTGACATTTTTTTCGTGGTGTTATTTGACTTACAAGAATTTCGTTGGTGGTGGCGGATTCATTGGCGGTGGAGCAGCTGCTGCAGAAGCCCCAGTTGAGAAGAAGGGAGAGATGAAGGAAGAGAGTGATGACGAAGACCTTGACCTTTCACTTTTTGATTAGTTCGTATAATTACTCGTTATTATTTATCAATCTCGTAATTTTTAGTACTCAACTTTAGATTATGTGTTGGTTTTTATTATGTAATGTCATAATCTTTATTTATAAA

mRNA sequence

ATGCGTCGAGAGAAGCTATTTCTCCCGACACCAAGAAAACGACGTCGGGAGAAACACAATGGAAATACTTTCTCTCGACGCCCTAAGACGGCGTCGGCAAAAACGCTACCTTTCTCGACGTCGAGAGAAATGCTCTCTCTTCTCCAAACCAAGTCGCCGTTTCCTGTCCCACCGTCTCCTCGCCTACCGTCGTCTCGTGCGCCGTCGTCCGTCGCCGCCTCACTCGCCGTCGACTGTGCTTTTGAAGTTGAAATCGGTGCTCCTTTGTTGGACTTGAGGGCCTTGGGCATTTTGGCTAAAAGATTTTGGTTGCGGTTTCTCGTCATCCTCGATGAATCATTTGTTACGGTAGCAAATTTGGAATCATTGAGTGATCAGCTTGTTGCTATCCTGCAGTTATGTGTGATTTGGGAATTTCAAGGCTTTGATCATGACAAGGGTAGCAATAATTTCGTTGGTGGTGGCGGATTCATTGGCGGTGGAGCAGCTGCTGCAGAAGCCCCAGTTGAGAAGAAGGGAGAGATGAAGGAAGAGAGTGATGACGAAGACCTTGACCTTTCACTTTTTGATTAG

Coding sequence (CDS)

ATGCGTCGAGAGAAGCTATTTCTCCCGACACCAAGAAAACGACGTCGGGAGAAACACAATGGAAATACTTTCTCTCGACGCCCTAAGACGGCGTCGGCAAAAACGCTACCTTTCTCGACGTCGAGAGAAATGCTCTCTCTTCTCCAAACCAAGTCGCCGTTTCCTGTCCCACCGTCTCCTCGCCTACCGTCGTCTCGTGCGCCGTCGTCCGTCGCCGCCTCACTCGCCGTCGACTGTGCTTTTGAAGTTGAAATCGGTGCTCCTTTGTTGGACTTGAGGGCCTTGGGCATTTTGGCTAAAAGATTTTGGTTGCGGTTTCTCGTCATCCTCGATGAATCATTTGTTACGGTAGCAAATTTGGAATCATTGAGTGATCAGCTTGTTGCTATCCTGCAGTTATGTGTGATTTGGGAATTTCAAGGCTTTGATCATGACAAGGGTAGCAATAATTTCGTTGGTGGTGGCGGATTCATTGGCGGTGGAGCAGCTGCTGCAGAAGCCCCAGTTGAGAAGAAGGGAGAGATGAAGGAAGAGAGTGATGACGAAGACCTTGACCTTTCACTTTTTGATTAG

Protein sequence

MRREKLFLPTPRKRRREKHNGNTFSRRPKTASAKTLPFSTSREMLSLLQTKSPFPVPPSPRLPSSRAPSSVAASLAVDCAFEVEIGAPLLDLRALGILAKRFWLRFLVILDESFVTVANLESLSDQLVAILQLCVIWEFQGFDHDKGSNNFVGGGGFIGGGAAAAEAPVEKKGEMKEESDDEDLDLSLFD

Homology

[Close]

BLAST of Spg008048 vs. NCBI nr
Match: XP_008451467.1 (PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo] >KAA0048624.1 60S acidic ribosomal protein P3-2 [Cucumis melo var. makuwa] >TYK01401.1 60S acidic ribosomal protein P3-2 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 2.7e-04
Identity = 34/48 (70.83%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 153 GGGGFIGGGA----------AAAEAPVEKKGEMKEESDDEDLDLSLFD 191
           GGGGFIGGGA          AAAEAP EKK E+KEESDDEDL LSLFD
Sbjct: 73  GGGGFIGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLFD 120

[Close]

BLAST of Spg008048 vs. ExPASy TrEMBL
Match: A0A5D3BNN6 (60S acidic ribosomal protein P3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00960 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 34/48 (70.83%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 153 GGGGFIGGGA----------AAAEAPVEKKGEMKEESDDEDLDLSLFD 191
           GGGGFIGGGA          AAAEAP EKK E+KEESDDEDL LSLFD
Sbjct: 73  GGGGFIGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLFD 120

[Close]

BLAST of Spg008048 vs. ExPASy TrEMBL
Match: A0A1S3BRK9 (60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 34/48 (70.83%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 153 GGGGFIGGGA----------AAAEAPVEKKGEMKEESDDEDLDLSLFD 191
           GGGGFIGGGA          AAAEAP EKK E+KEESDDEDL LSLFD
Sbjct: 73  GGGGFIGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLFD 120

The following BLAST results are available for this feature:

BLAST of Spg008048 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451467.1	2.7e-04	70.83	PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo] >KAA0048624.1 60S ac...	[more]

BLAST of Spg008048 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg008048 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BNN6	1.3e-04	70.83	60S acidic ribosomal protein P3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BRK9	1.3e-04	70.83	60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 S...	[more]

BLAST of Spg008048 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008048.1	Spg008048.1	mRNA