Spg007904 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg007904
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Locationscaffold5: 23353516 .. 23354001 (+)
RNA-Seq ExpressionSpg007904
SyntenySpg007904
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGAACCTTAACCCTAAGGATCTTAACATTGGACCTATCATTCTTTGGAAGACATGGTCCCTCTGCAACAAAATTTCAGCCAACAATCAAGACGCAAATGCTGAGTACTTTTTCCAAGATATTCAGAACAGTGTAAAGGAAGTGGAAGAAGCGTACCTGAACAGCCATCAGTCGAGAAGAATTGGGAATCTCTCGAGTCAAGTTCACCAAGTCCCCTGGAAAATCCCAAACCCGAATTGCTGGCGATTAAGCGCAGATGCAACCTGGAGTGAAAAGCGTGGAATCGGAGGTTTGGGCTGGGTTGTGCATGACTCGGAAAGATCCCTCGTTTGTCTCAGAATGCATAAAATTTATCGAAATTGGTCAATGAAGATGTTGGAAGCGAAAGCTATTTTGGAAGCGCTAAAGGCGTTAATCAGTACCTGCAATCAAAGGGGTGTGTTCCGCCTCTCTTTAATTTTGAAATATTTACAGCTTTAA

mRNA sequence

ATGGAAGAGAACCTTAACCCTAAGGATCTTAACATTGGACCTATCATTCTTTGGAAGACATGGTCCCTCTGCAACAAAATTTCAGCCAACAATCAAGACGCAAATGCTGAGTACTTTTTCCAAGATATTCAGAACAGTGTAAAGGAAGTGGAAGAAGCGTACCTGAACAGCCATCAGTCGAGAAGAATTGGGAATCTCTCGAGTCAAGTTCACCAAGTCCCCTGGAAAATCCCAAACCCGAATTGCTGGCGATTAAGCGCAGATGCAACCTGGAGTGAAAAGCGTGGAATCGGAGGTTTGGGCTGGGTTGTGCATGACTCGGAAAGATCCCTCGTTTGTCTCAGAATGCATAAAATTTATCGAAATTGGTCAATGAAGATGTTGGAAGCGAAAGCTATTTTGGAAGCGCTAAAGGCGTTAATCAGTACCTGCAATCAAAGGGGTGTGTTCCGCCTCTCTTTAATTTTGAAATATTTACAGCTTTAA

Coding sequence (CDS)

ATGGAAGAGAACCTTAACCCTAAGGATCTTAACATTGGACCTATCATTCTTTGGAAGACATGGTCCCTCTGCAACAAAATTTCAGCCAACAATCAAGACGCAAATGCTGAGTACTTTTTCCAAGATATTCAGAACAGTGTAAAGGAAGTGGAAGAAGCGTACCTGAACAGCCATCAGTCGAGAAGAATTGGGAATCTCTCGAGTCAAGTTCACCAAGTCCCCTGGAAAATCCCAAACCCGAATTGCTGGCGATTAAGCGCAGATGCAACCTGGAGTGAAAAGCGTGGAATCGGAGGTTTGGGCTGGGTTGTGCATGACTCGGAAAGATCCCTCGTTTGTCTCAGAATGCATAAAATTTATCGAAATTGGTCAATGAAGATGTTGGAAGCGAAAGCTATTTTGGAAGCGCTAAAGGCGTTAATCAGTACCTGCAATCAAAGGGGTGTGTTCCGCCTCTCTTTAATTTTGAAATATTTACAGCTTTAA

Protein sequence

MEENLNPKDLNIGPIILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQSRRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEKRGIGGLGWVVHDSERSLVCLRMHKIYRNWSMKMLEAKAILEALKALISTCNQRGVFRLSLILKYLQL
Homology
BLAST of Spg007904 vs. NCBI nr
Match: KAG6599977.1 (hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06
Identity = 26/58 (44.83%), Postives = 41/58 (70.69%), Query Frame = 0

Query: 84  RLSADATWSEKRGIGGLGWVVHDSERSLVCLRMHKIYRNWSMKMLEAKAILEALKALI 142
           +L++ A+WSE+ G GG+ WV+HDS  S +C+   ++ R W +KMLE KA++E LK  +
Sbjct: 7   KLNSYASWSEEAGKGGVSWVIHDSLGSSICIECKELRRKWLVKMLEGKAMIEGLKTYL 64

BLAST of Spg007904 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 7.1e-06
Identity = 37/144 (25.69%), Postives = 62/144 (43.06%), Query Frame = 0

Query: 5   LNPKDLNIGPIILWKTWSLCNK-------ISANNQDANAEYFFQ---DIQNSVKEVEEAY 64
           L+ +++    +I W+ W   N+       I     D +   F     D    + +   + 
Sbjct: 26  LSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQ 85

Query: 65  LNSHQSRRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEKRGIGGLGWVVHDSERSLVCL 124
            N     R G  +  +  V W  P  NCW+L+ DA+WSE+R +GG+GW++ D    +V  
Sbjct: 86  QNDGYLPR-GRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLA 145

Query: 125 RMHKIYRNWSMKMLEAKAILEALK 139
              KI     +  LE   I+  L+
Sbjct: 146 GNCKIREKKEINALELMTIIRGLQ 168

BLAST of Spg007904 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 9.2e-06
Identity = 39/140 (27.86%), Postives = 71/140 (50.71%), Query Frame = 0

Query: 1   MEENLNPKDLNIGPIILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQS 60
           M +  + +DL++  I  W  W+  N +    + ++   F   IQ   K V E+   S  S
Sbjct: 1   MLDKASDEDLDVLLIGSWVIWNHRNYVIFRGEHSS---FSTMIQQLTKFVTESSYQSETS 60

Query: 61  RRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEKRGIGGLGWVVHDSERSLVCLRMHKIY 120
             + + +   +++ W+ P  + W L+ADA+WS+    GG+GW++   +  +V      + 
Sbjct: 61  LSMLHKTLN-NKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVE 120

Query: 121 RNWSMKMLEAKAILEALKAL 141
              ++K+LEA AILE L+ L
Sbjct: 121 ACNNVKLLEASAILEGLRNL 136

BLAST of Spg007904 vs. NCBI nr
Match: XP_022148549.1 (uncharacterized protein LOC111017181 [Momordica charantia])

HSP 1 Score: 58.5 bits (140), Expect = 6.0e-05
Identity = 31/110 (28.18%), Postives = 52/110 (47.27%), Query Frame = 0

Query: 13  GPIILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQSRRIGNLSSQVHQ 72
           G ++LW  W+  N+I  +  +       Q     ++   E+ +    +   GNL+ +   
Sbjct: 19  GLVLLWSIWTYRNQIVHSTIE-------QPCSQKIRAFTESKIYEFTTNLGGNLNMEDKN 78

Query: 73  VP----WKIPNPNCWRLSADATWSEKRGIGGLGWVVHDSERSLV---CLR 116
           +P    W  P  + W+L+ DATW +    GGLGW+V DSE   +   CL+
Sbjct: 79  LPRTVGWTPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMAECLK 121

BLAST of Spg007904 vs. NCBI nr
Match: CAA7055611.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 58.2 bits (139), Expect = 7.8e-05
Identity = 31/135 (22.96%), Postives = 63/135 (46.67%), Query Frame = 0

Query: 5   LNPKDLNIGPIILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQ--SRR 64
           L  K + I P +LW+ W   N++    ++ NA    Q++ N   E  E +    +  +R 
Sbjct: 32  LKEKSVKIAPWLLWRIWKNRNELIHKGREYNA----QEVANKAVEDAEEWEGRMEVKTRE 91

Query: 65  IGNLSSQVHQVPWKIPNPNCWRLSADATWSEKRGIGGLGWVVHDSERSLVCLRMHKIYRN 124
             N+  +  +  W+ P    W+ + D +WS+ +   G+GW++ D   +++ +     +R 
Sbjct: 92  AKNVIERQSRSKWRPPTHGQWKCNTDGSWSKNQDKSGVGWILRDHNGNMIWMGAKAYHRL 151

Query: 125 WSMKMLEAKAILEAL 138
            S    E +A+  A+
Sbjct: 152 ESALETELEALRWAI 162

BLAST of Spg007904 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.4e-06
Identity = 37/144 (25.69%), Postives = 62/144 (43.06%), Query Frame = 0

Query: 5   LNPKDLNIGPIILWKTWSLCNK-------ISANNQDANAEYFFQ---DIQNSVKEVEEAY 64
           L+ +++    +I W+ W   N+       I     D +   F     D    + +   + 
Sbjct: 26  LSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQ 85

Query: 65  LNSHQSRRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEKRGIGGLGWVVHDSERSLVCL 124
            N     R G  +  +  V W  P  NCW+L+ DA+WSE+R +GG+GW++ D    +V  
Sbjct: 86  QNDGYLPR-GRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLA 145

Query: 125 RMHKIYRNWSMKMLEAKAILEALK 139
              KI     +  LE   I+  L+
Sbjct: 146 GNCKIREKKEINALELMTIIRGLQ 168

BLAST of Spg007904 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.5e-06
Identity = 39/140 (27.86%), Postives = 71/140 (50.71%), Query Frame = 0

Query: 1   MEENLNPKDLNIGPIILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQS 60
           M +  + +DL++  I  W  W+  N +    + ++   F   IQ   K V E+   S  S
Sbjct: 1   MLDKASDEDLDVLLIGSWVIWNHRNYVIFRGEHSS---FSTMIQQLTKFVTESSYQSETS 60

Query: 61  RRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEKRGIGGLGWVVHDSERSLVCLRMHKIY 120
             + + +   +++ W+ P  + W L+ADA+WS+    GG+GW++   +  +V      + 
Sbjct: 61  LSMLHKTLN-NKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVE 120

Query: 121 RNWSMKMLEAKAILEALKAL 141
              ++K+LEA AILE L+ L
Sbjct: 121 ACNNVKLLEASAILEGLRNL 136

BLAST of Spg007904 vs. ExPASy TrEMBL
Match: A0A6J1D4B6 (uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017181 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.9e-05
Identity = 31/110 (28.18%), Postives = 52/110 (47.27%), Query Frame = 0

Query: 13  GPIILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQSRRIGNLSSQVHQ 72
           G ++LW  W+  N+I  +  +       Q     ++   E+ +    +   GNL+ +   
Sbjct: 19  GLVLLWSIWTYRNQIVHSTIE-------QPCSQKIRAFTESKIYEFTTNLGGNLNMEDKN 78

Query: 73  VP----WKIPNPNCWRLSADATWSEKRGIGGLGWVVHDSERSLV---CLR 116
           +P    W  P  + W+L+ DATW +    GGLGW+V DSE   +   CL+
Sbjct: 79  LPRTVGWTPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMAECLK 121

BLAST of Spg007904 vs. ExPASy TrEMBL
Match: A0A6D2KM87 (RNase H domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS42847 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-05
Identity = 31/135 (22.96%), Postives = 63/135 (46.67%), Query Frame = 0

Query: 5   LNPKDLNIGPIILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQ--SRR 64
           L  K + I P +LW+ W   N++    ++ NA    Q++ N   E  E +    +  +R 
Sbjct: 32  LKEKSVKIAPWLLWRIWKNRNELIHKGREYNA----QEVANKAVEDAEEWEGRMEVKTRE 91

Query: 65  IGNLSSQVHQVPWKIPNPNCWRLSADATWSEKRGIGGLGWVVHDSERSLVCLRMHKIYRN 124
             N+  +  +  W+ P    W+ + D +WS+ +   G+GW++ D   +++ +     +R 
Sbjct: 92  AKNVIERQSRSKWRPPTHGQWKCNTDGSWSKNQDKSGVGWILRDHNGNMIWMGAKAYHRL 151

Query: 125 WSMKMLEAKAILEAL 138
            S    E +A+  A+
Sbjct: 152 ESALETELEALRWAI 162

BLAST of Spg007904 vs. ExPASy TrEMBL
Match: A0A1J3C7A8 (Putative ribonuclease H protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR12511_c0_g1_i1_g.40014 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.9e-05
Identity = 35/134 (26.12%), Postives = 60/134 (44.78%), Query Frame = 0

Query: 8   KDLNIGPIILWKTWSLCNKISANNQDANAEYFF----QDIQNSVKEVEEAYLNSHQSRRI 67
           K+ N+GP ++W+ W   N +    ++ +A        +D++  VK  EE    S  S + 
Sbjct: 520 KEANLGPWLMWRIWKSRNDLIIKGKEYSAMDTVLKAREDMEEWVKSTEEKSKKSKDSSKP 579

Query: 68  GNLSSQVHQVPWKIPNPNCWRLSADATWSEKRGIGGLGWVVHDSERSLVCLRMHKIYRNW 127
            + S       WK P     + + D TWSE+    G+GWV+ DS   ++ +   K     
Sbjct: 580 NDSSINA----WKPPPQGWLKCNVDGTWSEEHDRSGIGWVLRDSRGKVIWMGARKTKNLG 639

Query: 128 SMKMLEAKAILEAL 138
           S    E +A+  A+
Sbjct: 640 SPLATEIEALRWAI 649

BLAST of Spg007904 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.4e-04
Identity = 25/135 (18.52%), Postives = 59/135 (43.70%), Query Frame = 0

Query: 16  ILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQSRRIGNLSSQVHQVPW 75
           ++W+ W   N +  N+     +   +   N  KE  +  + + Q     N +       W
Sbjct: 47  LMWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMTNEQQNGNRN-ADPSRNTKW 106

Query: 76  KIPNPNCWRLSADATWSEKRGIGGLGWVVHDSERSLVCLRMHKIYRNWSMKMLEAKAILE 135
             P  +  + + DA+  E+  + GLGW++ +S+ +++   M K     + +  E   ++ 
Sbjct: 107 SPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLIW 166

Query: 136 ALKALISTCNQRGVF 151
           A++A     +++ +F
Sbjct: 167 AIQASYGFGHKKVIF 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6599977.11.1e-0644.83hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022143317.17.1e-0625.69uncharacterized protein LOC111013216 [Momordica charantia][more]
XP_022155262.19.2e-0627.86uncharacterized protein LOC111022403 [Momordica charantia][more]
XP_022148549.16.0e-0528.18uncharacterized protein LOC111017181 [Momordica charantia][more]
CAA7055611.17.8e-0522.96unnamed protein product [Microthlaspi erraticum][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CQG03.4e-0625.69uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DNV94.5e-0627.86uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1D4B62.9e-0528.18uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A6D2KM873.8e-0522.96RNase H domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_L... [more]
A0A1J3C7A84.9e-0526.12Putative ribonuclease H protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=... [more]
Match NameE-valueIdentityDescription
AT5G65005.11.4e-0418.52Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 87..140
e-value: 3.9E-5
score: 23.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg007904.1Spg007904.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity