Spg007746 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg007746
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Locationscaffold4: 9385281 .. 9385892 (+)
RNA-Seq ExpressionSpg007746
SyntenySpg007746
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTCGACAGCATCAGAGTTTGGCCCAGTACTGTCTTCTGAAAGACGGCACACTCGAAGGCCGATGGTTGAAGTGTTGCACGATCCAAGTTCCCCGCAGATATGGTTGATGCCTTCGAGTGACTGTTGGAAGCTGAACAGTGATGTAACTTGGGACACGCGAACGAGTAGTGGCACGATTGGATGGATTCTCCGACGGCAAGATGGCATCCCTGTGACGGCTGGGTTCCGATTAATCAAGAAAAATTGGAGAGTTAGCTGGTTGGAAGCCCTAGCTCTGGTGGAAGGGTTGAAATCGATTCCATTAACGTCTCCCAAGCTGGTTATCGAGATTGACTCAGTGCAAGTGGTACACCTGCTTGAGGAGAAAGACGTGGATCTTACAGAACTTGGCCTCTTCATCAATGAAGTGAAGTTTTTGCTTTCCAACCATCAAGTTCACTTGATTTCCAATATATCCATGAGGCACAATAATATGACCCATCAGCTGCCCCGCAAGGCTTGCTCTCTTAATTCTTCAAATAGCTGTAGTGATTCTTTTCCCTGGTGGCTTTTAGAGTTAAACAATGTAGACATTGGTGTTAATTCCATTTTTGGGGGTGCCTGTTAG

mRNA sequence

ATGGTGTCGACAGCATCAGAGTTTGGCCCAGTACTGTCTTCTGAAAGACGGCACACTCGAAGGCCGATGGTTGAAGTGTTGCACGATCCAAGTTCCCCGCAGATATGGTTGATGCCTTCGAGTGACTGTTGGAAGCTGAACAGTGATGTAACTTGGGACACGCGAACGAGTAGTGGCACGATTGGATGGATTCTCCGACGGCAAGATGGCATCCCTGTGACGGCTGGGTTCCGATTAATCAAGAAAAATTGGAGAGTTAGCTGGTTGGAAGCCCTAGCTCTGGTGGAAGGGTTGAAATCGATTCCATTAACGTCTCCCAAGCTGGTTATCGAGATTGACTCAGTGCAAGTGGTACACCTGCTTGAGGAGAAAGACGTGGATCTTACAGAACTTGGCCTCTTCATCAATGAAGTGAAGTTTTTGCTTTCCAACCATCAAGTTCACTTGATTTCCAATATATCCATGAGGCACAATAATATGACCCATCAGCTGCCCCGCAAGGCTTGCTCTCTTAATTCTTCAAATAGCTGTAGTGATTCTTTTCCCTGGTGGCTTTTAGAGTTAAACAATGTAGACATTGGTGTTAATTCCATTTTTGGGGGTGCCTGTTAG

Coding sequence (CDS)

ATGGTGTCGACAGCATCAGAGTTTGGCCCAGTACTGTCTTCTGAAAGACGGCACACTCGAAGGCCGATGGTTGAAGTGTTGCACGATCCAAGTTCCCCGCAGATATGGTTGATGCCTTCGAGTGACTGTTGGAAGCTGAACAGTGATGTAACTTGGGACACGCGAACGAGTAGTGGCACGATTGGATGGATTCTCCGACGGCAAGATGGCATCCCTGTGACGGCTGGGTTCCGATTAATCAAGAAAAATTGGAGAGTTAGCTGGTTGGAAGCCCTAGCTCTGGTGGAAGGGTTGAAATCGATTCCATTAACGTCTCCCAAGCTGGTTATCGAGATTGACTCAGTGCAAGTGGTACACCTGCTTGAGGAGAAAGACGTGGATCTTACAGAACTTGGCCTCTTCATCAATGAAGTGAAGTTTTTGCTTTCCAACCATCAAGTTCACTTGATTTCCAATATATCCATGAGGCACAATAATATGACCCATCAGCTGCCCCGCAAGGCTTGCTCTCTTAATTCTTCAAATAGCTGTAGTGATTCTTTTCCCTGGTGGCTTTTAGAGTTAAACAATGTAGACATTGGTGTTAATTCCATTTTTGGGGGTGCCTGTTAG

Protein sequence

MVSTASEFGPVLSSERRHTRRPMVEVLHDPSSPQIWLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSIPLTSPKLVIEIDSVQVVHLLEEKDVDLTELGLFINEVKFLLSNHQVHLISNISMRHNNMTHQLPRKACSLNSSNSCSDSFPWWLLELNNVDIGVNSIFGGAC
Homology
BLAST of Spg007746 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 88.6 bits (218), Expect = 6.8e-14
Identity = 57/175 (32.57%), Postives = 85/175 (48.57%), Query Frame = 0

Query: 14  SERRHTRRPMVEVLHDPSSPQI-WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIP 73
           +E  +     + +LH   + ++ W  P    W LN+D +W   T  G IGWI+R  DG  
Sbjct: 48  TESSYQSETSLSMLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDI 107

Query: 74  VTAGFRLIKKNWRVSWLEALALVEGLKSIPLTS--PKLVIEIDSVQVVHLLEEKDVDLTE 133
           V AG R ++    V  LEA A++EGL+++        L IE DS +V  LL  K  DLT+
Sbjct: 108 VLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLRPLHIETDSAEVESLLNRKREDLTK 167

Query: 134 LGLFINEVKFLLSNHQVHLISNISMRHNNMTHQLPRKACSLNSSNSCSDSFPWWL 186
            G  + E+  L  + ++   + +    N   H L ++A  L  S    D FP WL
Sbjct: 168 TGWVVEEILNLRDSCEILAFAKVGRETNGCAHSLAQRASVLRESMIWVDCFPNWL 222

BLAST of Spg007746 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-13
Identity = 46/147 (31.29%), Postives = 86/147 (58.50%), Query Frame = 0

Query: 23  MVEVLHDPSSPQIWLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKK 82
           ++  + D +  Q W  P+S+ WKLN++  W   T++G IGWILR + G  + A  R+I+ 
Sbjct: 67  LIRRIEDNTGAQ-WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRA 126

Query: 83  NWRVSWLEALALVEGLKSIPLTSPKLV-IEIDSVQVVHLLEEKDVDLTELGLFINEVKFL 142
              +++LE +A+ EGL++I     + + +E DS++ +HLL  +  D TE+   + E+  +
Sbjct: 127 ERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQM 186

Query: 143 LSNHQVHLISNISMRHNNMTHQLPRKA 169
           + + ++  + +IS   N + H L R+A
Sbjct: 187 MKDMEIVSMRHISREANKVAHGLARRA 212

BLAST of Spg007746 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 85.9 bits (211), Expect = 4.4e-13
Identity = 46/142 (32.39%), Postives = 81/142 (57.04%), Query Frame = 0

Query: 36  WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALV 95
           W  P+S+ WKLN+D  W   T++G IGWILR + G  + A  R+I+    +++LE +A+ 
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 96  EGLKSI------PLTSP---KLVIEIDSVQVVHLLEEKDVDLTELGLFINEVKFLLSNHQ 155
           EGL++I      P+       + +E DS++ +HLL  +  D TE+   + E+  ++ + +
Sbjct: 139 EGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMK 198

Query: 156 VHLISNISMRHNNMTHQLPRKA 169
           +  + +IS   N + H L R+A
Sbjct: 199 IVSMRHISREANKVAHDLARRA 220

BLAST of Spg007746 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 3.0e-09
Identity = 37/95 (38.95%), Postives = 58/95 (61.05%), Query Frame = 0

Query: 36  WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALV 95
           W  P ++CWKLN+D +W      G IGWIL    G  V AG   I++   ++ LE + ++
Sbjct: 105 WSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTII 164

Query: 96  EGLKSIPLTS-PKLVIEIDSVQVVHLLEEKDVDLT 130
            GL+ I + S   + +E DSV+V+ L++++DVDLT
Sbjct: 165 RGLQFINMQSRSPIYLESDSVEVIRLMKKEDVDLT 199

BLAST of Spg007746 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 8.6e-09
Identity = 33/87 (37.93%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 36  WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALV 95
           W  P+S+ WKLN+D  W   T++  IGWILR + G  +  G R+I+    +++LE +A+ 
Sbjct: 255 WKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAIC 314

Query: 96  EGLKSIPLTSPKLV-IEIDSVQVVHLL 122
           EGL++I     + + +E DS++ +HLL
Sbjct: 315 EGLRAIRQEHCRPIHLESDSLEAIHLL 341

BLAST of Spg007746 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.3e-14
Identity = 57/175 (32.57%), Postives = 85/175 (48.57%), Query Frame = 0

Query: 14  SERRHTRRPMVEVLHDPSSPQI-WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIP 73
           +E  +     + +LH   + ++ W  P    W LN+D +W   T  G IGWI+R  DG  
Sbjct: 48  TESSYQSETSLSMLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDI 107

Query: 74  VTAGFRLIKKNWRVSWLEALALVEGLKSIPLTS--PKLVIEIDSVQVVHLLEEKDVDLTE 133
           V AG R ++    V  LEA A++EGL+++        L IE DS +V  LL  K  DLT+
Sbjct: 108 VLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLRPLHIETDSAEVESLLNRKREDLTK 167

Query: 134 LGLFINEVKFLLSNHQVHLISNISMRHNNMTHQLPRKACSLNSSNSCSDSFPWWL 186
            G  + E+  L  + ++   + +    N   H L ++A  L  S    D FP WL
Sbjct: 168 TGWVVEEILNLRDSCEILAFAKVGRETNGCAHSLAQRASVLRESMIWVDCFPNWL 222

BLAST of Spg007746 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.3e-14
Identity = 46/147 (31.29%), Postives = 86/147 (58.50%), Query Frame = 0

Query: 23  MVEVLHDPSSPQIWLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKK 82
           ++  + D +  Q W  P+S+ WKLN++  W   T++G IGWILR + G  + A  R+I+ 
Sbjct: 67  LIRRIEDNTGAQ-WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRA 126

Query: 83  NWRVSWLEALALVEGLKSIPLTSPKLV-IEIDSVQVVHLLEEKDVDLTELGLFINEVKFL 142
              +++LE +A+ EGL++I     + + +E DS++ +HLL  +  D TE+   + E+  +
Sbjct: 127 ERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQM 186

Query: 143 LSNHQVHLISNISMRHNNMTHQLPRKA 169
           + + ++  + +IS   N + H L R+A
Sbjct: 187 MKDMEIVSMRHISREANKVAHGLARRA 212

BLAST of Spg007746 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-13
Identity = 46/142 (32.39%), Postives = 81/142 (57.04%), Query Frame = 0

Query: 36  WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALV 95
           W  P+S+ WKLN+D  W   T++G IGWILR + G  + A  R+I+    +++LE +A+ 
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 96  EGLKSI------PLTSP---KLVIEIDSVQVVHLLEEKDVDLTELGLFINEVKFLLSNHQ 155
           EGL++I      P+       + +E DS++ +HLL  +  D TE+   + E+  ++ + +
Sbjct: 139 EGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMK 198

Query: 156 VHLISNISMRHNNMTHQLPRKA 169
           +  + +IS   N + H L R+A
Sbjct: 199 IVSMRHISREANKVAHDLARRA 220

BLAST of Spg007746 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-09
Identity = 37/95 (38.95%), Postives = 58/95 (61.05%), Query Frame = 0

Query: 36  WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALV 95
           W  P ++CWKLN+D +W      G IGWIL    G  V AG   I++   ++ LE + ++
Sbjct: 105 WSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTII 164

Query: 96  EGLKSIPLTS-PKLVIEIDSVQVVHLLEEKDVDLT 130
            GL+ I + S   + +E DSV+V+ L++++DVDLT
Sbjct: 165 RGLQFINMQSRSPIYLESDSVEVIRLMKKEDVDLT 199

BLAST of Spg007746 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.2e-09
Identity = 33/87 (37.93%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 36  WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALV 95
           W  P+S+ WKLN+D  W   T++  IGWILR + G  +  G R+I+    +++LE +A+ 
Sbjct: 255 WKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAIC 314

Query: 96  EGLKSIPLTSPKLV-IEIDSVQVVHLL 122
           EGL++I     + + +E DS++ +HLL
Sbjct: 315 EGLRAIRQEHCRPIHLESDSLEAIHLL 341

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155262.16.8e-1432.57uncharacterized protein LOC111022403 [Momordica charantia][more]
XP_022143535.11.5e-1331.29uncharacterized protein LOC111013412 [Momordica charantia][more]
XP_022156777.14.4e-1332.39uncharacterized protein LOC111023608 [Momordica charantia][more]
XP_022143317.13.0e-0938.95uncharacterized protein LOC111013216 [Momordica charantia][more]
XP_022154990.18.6e-0937.93uncharacterized protein LOC111022134 isoform X1 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DNV93.3e-1432.57uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1CP267.3e-1431.29uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DSV12.1e-1332.39uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1CQG01.4e-0938.95uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DL644.2e-0937.93uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 43..170
e-value: 3.6E-5
score: 25.8
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 47..166
e-value: 2.1E-13
score: 50.1
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 46..144
e-value: 2.50042E-9
score: 51.1608
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 43..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg007746.1Spg007746.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity