Spg007612 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg007612
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA-directed RNA polymerase subunit beta
Location	scaffold2: 1583371 .. 1584002 (+)
RNA-Seq Expression	Spg007612
Synteny	Spg007612

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATCGCAGATTCGAGTCTTATCTTCATCGGTGTCTCCGCCGTACCTCGTCCCCTTTTCAACACCAACAATGGCGGAAAATTCAGAGCCACATCGGCTAAAAGAACAGACGATTACGATTCCACTTCATCGACTCAAGCAAATCGGCTCAAAATTCCATCGCTGAGACTGAGAGTTTCAAATCCACTTCTCGCCCGATCTGTCGTTTCGGTACTCGGATTAGGGTTCGTCGATGCAGGGTATGAAAATTAATTTCGATCTTCTTGTTTTCCTTGAGATTCGCTCTTGTTCTGTTTCCTCTGAAATTGAAGTCGAGTTAGGGATTCCATGGAATGATTAGGTACAGTGGAGATTGGTCTAGAATTGGTGCGATTACGAAGGAGAGTGAAGATTTGTTGAAGATTGGAGCTTTCTTGGTGGTTCCGTTTTGCTTATTTCTGATTTTTTCTTTCTCCAAAGGGACGGATTCTTCGTAAGTGTACGGATGATGCCCGAAATTGGCCACAACTAATTTTTATGGTAGTTCTGATTTTTTTTAAGTATATAACTCATGTGAATATTTGAATCTTCTACTTTTCTTAGTTGTATGGAATCCATTTTTGACCATATATAGCTCGTCTTAATCGATG

mRNA sequence

ATGGCGATCGCAGATTCGAGTCTTATCTTCATCGGTGTCTCCGCCGTACCTCGTCCCCTTTTCAACACCAACAATGGCGGAAAATTCAGAGCCACATCGGCTAAAAGAACAGACGATTACGATTCCACTTCATCGACTCAAGCAAATCGGCTCAAAATTCCATCGCTGAGACTGAGAGTTTCAAATCCACTTCTCGCCCGATCTGTCGTTTCGGGATTCCATGGAATGATTAGGTACAGTGGAGATTGGTCTAGAATTGGTGCGATTACGAAGGAGAGTGAAGATTTGTTGAAGATTGGAGCTTTCTTGGTGGTTCCGTTTTGCTTATTTCTGATTTTTTCTTTCTCCAAAGGGACGGATTCTTCGTAA

Coding sequence (CDS)

ATGGCGATCGCAGATTCGAGTCTTATCTTCATCGGTGTCTCCGCCGTACCTCGTCCCCTTTTCAACACCAACAATGGCGGAAAATTCAGAGCCACATCGGCTAAAAGAACAGACGATTACGATTCCACTTCATCGACTCAAGCAAATCGGCTCAAAATTCCATCGCTGAGACTGAGAGTTTCAAATCCACTTCTCGCCCGATCTGTCGTTTCGGGATTCCATGGAATGATTAGGTACAGTGGAGATTGGTCTAGAATTGGTGCGATTACGAAGGAGAGTGAAGATTTGTTGAAGATTGGAGCTTTCTTGGTGGTTCCGTTTTGCTTATTTCTGATTTTTTCTTTCTCCAAAGGGACGGATTCTTCGTAA

Protein sequence

MAIADSSLIFIGVSAVPRPLFNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVSGFHGMIRYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFSFSKGTDSS

Homology

[Close]

BLAST of Spg007612 vs. NCBI nr
Match: XP_008443827.1 (PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo])

HSP 1 Score: 157.1 bits (396), Expect = 9.4e-35
Identity = 93/130 (71.54%), Postives = 101/130 (77.69%), Query Frame = 0


Query: 1   MAIADSSLIFIGVSAVPRPLFN---TNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLR 60
           MA+ DSS IFIG+SAVP PL N    NNG KF  TSAKRT D DSTSSTQ N+ K PS  
Sbjct: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPS-- 60

Query: 61  LRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIF 120
           LRVSNPLLARSVVS    GF     YSGDWSRIGAITKE+E+LLKIGAFLVVPFC+FL+F
Sbjct: 61  LRVSNPLLARSVVSVLGLGFVD-AGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVF 120

Query: 121 SFSK-GTDSS 123
           SFSK  +DSS
Sbjct: 121 SFSKFDSDSS 127

[Close]

BLAST of Spg007612 vs. NCBI nr
Match: XP_004146667.1 (uncharacterized protein LOC101206545 [Cucumis sativus] >KGN65187.1 hypothetical protein Csa_020133 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 5.1e-33
Identity = 91/129 (70.54%), Postives = 97/129 (75.19%), Query Frame = 0


Query: 1   MAIADSSLIFIGVSAVPRPLFNTNNGGKFRATSAKRT--DDYDSTSSTQANRLKIPSLRL 60
           MA+ DSS IFIG S VP PL N NNG KF  TSAKRT   D DS SSTQ N+ K PS  L
Sbjct: 1   MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPS--L 60

Query: 61  RVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFS 120
           RVSNPLLARSVVS    GF     YSGDWSRIGAITKE+EDLLKIGA LVVPFC+FL+FS
Sbjct: 61  RVSNPLLARSVVSVLGLGFVD-AGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFS 120

Query: 121 FSK-GTDSS 123
           FSK  +DSS
Sbjct: 121 FSKYDSDSS 126

[Close]

BLAST of Spg007612 vs. NCBI nr
Match: XP_022933449.1 (uncharacterized protein LOC111440861 [Cucurbita moschata] >KAG6587801.1 hypothetical protein SDJN03_16366, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035696.1 hypothetical protein SDJN02_02494, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.4 bits (368), Expect = 1.7e-31
Identity = 89/127 (70.08%), Postives = 97/127 (76.38%), Query Frame = 0


Query: 1   MAIADSSLIFIGVSAVPRP-LFNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLR 60
           M IADSS IF G+SA+P P L + NN  KF  TSAKRT D DS SSTQ   LK PS  LR
Sbjct: 1   MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISSTQ---LKFPS--LR 60

Query: 61  VSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFSF 120
           V+NPLLARSVV+    GF     YSGDWSRIGAITKE+EDLLKIGAFLVVPFC+FLIFSF
Sbjct: 61  VANPLLARSVVAVLGLGFVD-AGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSF 120

Query: 121 SKGTDSS 123
           S+ TDSS
Sbjct: 121 SEQTDSS 121

[Close]

BLAST of Spg007612 vs. NCBI nr
Match: XP_023004836.1 (uncharacterized protein LOC111498016 [Cucurbita maxima])

HSP 1 Score: 146.0 bits (367), Expect = 2.2e-31
Identity = 89/127 (70.08%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 1   MAIADSSLIFIGVSAVPRPL-FNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLR 60
           M IADSS IF G+SA+P PL  + NN  KF  TSAKRT D DS SSTQ   LK PS  LR
Sbjct: 1   MPIADSSFIFTGLSALPHPLILSNNNARKFGTTSAKRTGDSDSISSTQ---LKFPS--LR 60

Query: 61  VSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFSF 120
           VSNPLLARSVV+    GF     YSGDWSRIGAITKE+ED LKIGAFLVVPFC+FLIFSF
Sbjct: 61  VSNPLLARSVVAVLGLGFVD-AGYSGDWSRIGAITKETEDFLKIGAFLVVPFCVFLIFSF 120

Query: 121 SKGTDSS 123
           S+ TDSS
Sbjct: 121 SEQTDSS 121

[Close]

BLAST of Spg007612 vs. NCBI nr
Match: XP_038879768.1 (uncharacterized protein LOC120071517 [Benincasa hispida])

HSP 1 Score: 141.4 bits (355), Expect = 5.3e-30
Identity = 85/127 (66.93%), Postives = 98/127 (77.17%), Query Frame = 0


Query: 1   MAIADSSLIFIGVSAVPRPLFNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRV 60
           MA+ +SS IFIGVS VP PL N N+  KFR TSAK T+D DS S  ++++LK PS  LRV
Sbjct: 27  MAMVNSSFIFIGVSTVPYPLSNNNHSRKFRITSAKLTEDSDSDS--KSSQLKFPS--LRV 86

Query: 61  SNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFSFS 120
           SNPLLARSVVS    GF     YSGDWSRIG ITKESE+LLKIGAFLVVPFC+FL+FSFS
Sbjct: 87  SNPLLARSVVSVLGLGFVD-AGYSGDWSRIGVITKESEELLKIGAFLVVPFCVFLVFSFS 146

Query: 121 K-GTDSS 123
           +  +DSS
Sbjct: 147 RLDSDSS 148

[Close]

BLAST of Spg007612 vs. ExPASy TrEMBL
Match: A0A1S3B903 (uncharacterized protein LOC103487329 OS=Cucumis melo OX=3656 GN=LOC103487329 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.5e-35
Identity = 93/130 (71.54%), Postives = 101/130 (77.69%), Query Frame = 0


Query: 1   MAIADSSLIFIGVSAVPRPLFN---TNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLR 60
           MA+ DSS IFIG+SAVP PL N    NNG KF  TSAKRT D DSTSSTQ N+ K PS  
Sbjct: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPS-- 60

Query: 61  LRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIF 120
           LRVSNPLLARSVVS    GF     YSGDWSRIGAITKE+E+LLKIGAFLVVPFC+FL+F
Sbjct: 61  LRVSNPLLARSVVSVLGLGFVD-AGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVF 120

Query: 121 SFSK-GTDSS 123
           SFSK  +DSS
Sbjct: 121 SFSKFDSDSS 127

[Close]

BLAST of Spg007612 vs. ExPASy TrEMBL
Match: A0A0A0LWH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257930 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.5e-33
Identity = 91/129 (70.54%), Postives = 97/129 (75.19%), Query Frame = 0


Query: 1   MAIADSSLIFIGVSAVPRPLFNTNNGGKFRATSAKRT--DDYDSTSSTQANRLKIPSLRL 60
           MA+ DSS IFIG S VP PL N NNG KF  TSAKRT   D DS SSTQ N+ K PS  L
Sbjct: 1   MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPS--L 60

Query: 61  RVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFS 120
           RVSNPLLARSVVS    GF     YSGDWSRIGAITKE+EDLLKIGA LVVPFC+FL+FS
Sbjct: 61  RVSNPLLARSVVSVLGLGFVD-AGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFS 120

Query: 121 FSK-GTDSS 123
           FSK  +DSS
Sbjct: 121 FSKYDSDSS 126

[Close]

BLAST of Spg007612 vs. ExPASy TrEMBL
Match: A0A6J1EZT4 (uncharacterized protein LOC111440861 OS=Cucurbita moschata OX=3662 GN=LOC111440861 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 8.0e-32
Identity = 89/127 (70.08%), Postives = 97/127 (76.38%), Query Frame = 0


Query: 1   MAIADSSLIFIGVSAVPRP-LFNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLR 60
           M IADSS IF G+SA+P P L + NN  KF  TSAKRT D DS SSTQ   LK PS  LR
Sbjct: 1   MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISSTQ---LKFPS--LR 60

Query: 61  VSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFSF 120
           V+NPLLARSVV+    GF     YSGDWSRIGAITKE+EDLLKIGAFLVVPFC+FLIFSF
Sbjct: 61  VANPLLARSVVAVLGLGFVD-AGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSF 120

Query: 121 SKGTDSS 123
           S+ TDSS
Sbjct: 121 SEQTDSS 121

[Close]

BLAST of Spg007612 vs. ExPASy TrEMBL
Match: A0A6J1KT82 (uncharacterized protein LOC111498016 OS=Cucurbita maxima OX=3661 GN=LOC111498016 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.0e-31
Identity = 89/127 (70.08%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 1   MAIADSSLIFIGVSAVPRPL-FNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLR 60
           M IADSS IF G+SA+P PL  + NN  KF  TSAKRT D DS SSTQ   LK PS  LR
Sbjct: 1   MPIADSSFIFTGLSALPHPLILSNNNARKFGTTSAKRTGDSDSISSTQ---LKFPS--LR 60

Query: 61  VSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFSF 120
           VSNPLLARSVV+    GF     YSGDWSRIGAITKE+ED LKIGAFLVVPFC+FLIFSF
Sbjct: 61  VSNPLLARSVVAVLGLGFVD-AGYSGDWSRIGAITKETEDFLKIGAFLVVPFCVFLIFSF 120

Query: 121 SKGTDSS 123
           S+ TDSS
Sbjct: 121 SEQTDSS 121

[Close]

BLAST of Spg007612 vs. ExPASy TrEMBL
Match: A0A6J1C0R6 (uncharacterized protein LOC111007301 OS=Momordica charantia OX=3673 GN=LOC111007301 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.7e-30
Identity = 82/124 (66.13%), Postives = 90/124 (72.58%), Query Frame = 0


Query: 3   IADSSLIFIGVSAVPRPLFNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRVSN 62
           +ADS+ IF G SAV R LFN NN   FR   AKRTDD  +T S Q N+ + PS  LRV N
Sbjct: 1   MADSTFIFSGPSAVSRSLFNVNNRRNFRTALAKRTDDSTATKSNQENQFEFPS--LRVPN 60

Query: 63  PLLARSVVS----GFHGMIRYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFSFSKG 122
           PL+AR VVS    GF     YSGDWSRIGAITKESEDLLKIGAFLVVPFC+FLI SF+K 
Sbjct: 61  PLVARFVVSVLGLGFVD-AGYSGDWSRIGAITKESEDLLKIGAFLVVPFCVFLISSFAKQ 120

[Close]

BLAST of Spg007612 vs. TAIR 10
Match: AT4G30845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 74.3 bits (181), Expect = 7.4e-14
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 54  PSLRLRVSNPLLARSVVSGFH-GMI--RYSGDWSRIGAITKESEDLLKIGAFLVVPFCLF 113
           P LR++V N ++ARS ++    G I   YSGDWSRIG I+KE+E+LLKI AFLVVP C+F
Sbjct: 44  PILRIKVPNTIVARSAIAVLSLGFIDAGYSGDWSRIGVISKETEELLKIAAFLVVPLCIF 103

Query: 114 LIFSFS 117
           L  SFS
Sbjct: 104 LALSFS 109

The following BLAST results are available for this feature:

BLAST of Spg007612 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443827.1	9.4e-35	71.54	PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo]	[more]
XP_004146667.1	5.1e-33	70.54	uncharacterized protein LOC101206545 [Cucumis sativus] >KGN65187.1 hypothetical ...	[more]
XP_022933449.1	1.7e-31	70.08	uncharacterized protein LOC111440861 [Cucurbita moschata] >KAG6587801.1 hypothet...	[more]
XP_023004836.1	2.2e-31	70.08	uncharacterized protein LOC111498016 [Cucurbita maxima]	[more]
XP_038879768.1	5.3e-30	66.93	uncharacterized protein LOC120071517 [Benincasa hispida]	[more]

BLAST of Spg007612 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg007612 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B903	4.5e-35	71.54	uncharacterized protein LOC103487329 OS=Cucumis melo OX=3656 GN=LOC103487329 PE=...	[more]
A0A0A0LWH4	2.5e-33	70.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257930 PE=4 SV=1	[more]
A0A6J1EZT4	8.0e-32	70.08	uncharacterized protein LOC111440861 OS=Cucurbita moschata OX=3662 GN=LOC1114408...	[more]
A0A6J1KT82	1.0e-31	70.08	uncharacterized protein LOC111498016 OS=Cucurbita maxima OX=3661 GN=LOC111498016...	[more]
A0A6J1C0R6	5.7e-30	66.13	uncharacterized protein LOC111007301 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of Spg007612 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30845.1	7.4e-14	59.09	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38389	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA	coord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg007612.1	Spg007612.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane