Spg007603 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg007603
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRING-type domain-containing protein
Locationscaffold2: 1139360 .. 1140815 (-)
RNA-Seq ExpressionSpg007603
SyntenySpg007603
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGTTAGGTGTTTGTTTGTGAATGGAGAGTTCGTTTCTTCATTCCGGTGGGGCAGACCAACTGGACTCTGTAAATTTCATGGAAGCTTCTCACCTTCTTCCTCACACTTTCTTCCTTCTCTTTCCAATTACCGAACCACCAAATTCAAGACGAAGCAATGATTATTTTATAGAAGACCGATGGAATCAACGCAATCAAACGACATTTGATCACTTCTCTCCGCCTTCTCAGACAAGAAAGCCCTAAATCCGTGCAGAAATTTCAACTCTCGAGGTTTCGCAAGTTTCTCCAATGGCCGGAATGCTTCCAGGTGTAGAGTGTGCTCGAAGAAGACGGTGTCATCAAAACAAAGTATGGTCAGATTCACCGCCCGTCGCCGCTCAGACCTTAACCAGGAGATCCATTCTCTGCTTGTACACAAGCAACCACGAAACGCTCCTCGCTTCAAATCCCTCTCTGGTTCGTAAATCGCGTCTCGCTCTGTCAATAATGATTTCAAAATTTACTCGTTCAATTGAGGATGAAGAACAGAATTGATTCGATTCTATTTGAAAATTTTGCAGCAAAGAAGCCTGTTAGTTGAGGCACAACTACAAGAAGACGATAAACTGGACGGAATTGCGAAAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGATCGCAAAGGAAATCAGAGGATGGAAGGTACTGAAACGACGGCGTTTTCAACACCACCGATGAATTTACATTTCATTAATTAAATCATCGTAAAAATCATCCAAAATTCCTTGTTTCTCATGGTTCAAAAGAATTAAATGTTTGCGATTCGATGTAGAGGGATGATGACGAGAAAATTCAGTTGGACCAAGTTGAATTGGATCGCCGTAGAGCAACAAGATTGTGGTCCGTGCTGGTGATGAAGACGACTTGATTTCAGTTGGTCTGTACTTCTTCTTCTTCTTCTTTTCTTCCAAGGTGCTTGTTTCCATTAGAACTGCCCGTAATTTCCTCCATCGTTAACTTGCGAGGAAAACATTTGTCGTAATATCTGTGCTGATGTATGAGATGTCGTGATACAATCATTCTGGCATGTAAAGACTTTGAATACAGACACCCTTTTGGTTTATTTGAATGATTCTGATCATACTTGTTGTCAGTTCTTTATAAATTTTTGTGCGAAAAGTTGAAGTAGCTGAAACAAAAACCAAACCATTAGAATCGGTTTTTGCAGACGGATTGAAGAACAGTGAGAGGAAATTTGAGAATTTGAATCGAAGGGATGGAATTAAAGTGAATGCATGTAAGAGAGAGTTGTCTTCTAAACTTCTTCATTAGCTTCCTTGATCGTCAAAGGTTTTCGTTTGCGAAAGTTGGGGGAAATTACAAATAACTGAGAAAAATGGAGTAAATATTTGAGAACAAATACATAAACAATTAAATTGAGGCGCGAGTATCTCGCTCTAAGGAGATTCAAG

mRNA sequence

ATGGCCGGAATGCTTCCAGGTGTAGAGTGTGCTCGAAGAAGACGGTGTCATCAAAACAAAGTATGGTCAGATTCACCGCCCGTCGCCGCTCAGACCTTAACCAGGAGATCCATTCTCTGCTTGTACACAAGCAACCACGAAACGCTCCTCGCTTCAAATCCCTCTCTGCAAAGAAGCCTGTTAGTTGAGGCACAACTACAAGAAGACGATAAACTGGACGGAATTGCGAAAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGATCGCAAAGGAAATCAGAGGATGGAAGGTACTGA

Coding sequence (CDS)

ATGGCCGGAATGCTTCCAGGTGTAGAGTGTGCTCGAAGAAGACGGTGTCATCAAAACAAAGTATGGTCAGATTCACCGCCCGTCGCCGCTCAGACCTTAACCAGGAGATCCATTCTCTGCTTGTACACAAGCAACCACGAAACGCTCCTCGCTTCAAATCCCTCTCTGCAAAGAAGCCTGTTAGTTGAGGCACAACTACAAGAAGACGATAAACTGGACGGAATTGCGAAAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGATCGCAAAGGAAATCAGAGGATGGAAGGTACTGA

Protein sequence

MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKSEDGRY
Homology
BLAST of Spg007603 vs. NCBI nr
Match: XP_038876903.1 (uncharacterized protein LOC120069257 [Benincasa hispida])

HSP 1 Score: 166.8 bits (421), Expect = 9.5e-38
Identity = 83/97 (85.57%), Postives = 92/97 (94.85%), Query Frame = 0

Query: 1  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSL 60
          MAGMLPGVECARRRRCHQNKVWSDSPP+AAQ LTRRS+LCLYTSNHE+LLASNPSLQRSL
Sbjct: 1  MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSVLCLYTSNHESLLASNPSLQRSL 60

Query: 61 LVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKSEDGR 98
          L+EA   ED++LDG A+EAKRRLD+RLR+QRKSEDGR
Sbjct: 61 LIEA--GEDEELDGTAREAKRRLDKRLRTQRKSEDGR 95

BLAST of Spg007603 vs. NCBI nr
Match: XP_023515554.1 (uncharacterized protein LOC111779678 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.2 bits (409), Expect = 2.3e-36
Identity = 83/93 (89.25%), Postives = 87/93 (93.55%), Query Frame = 0

Query: 1  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSL 60
          MAGMLPGVECARRRRCHQNKVWSDSP VAAQ LTRRS+LCLYTSNHETLLASNPSL+RSL
Sbjct: 1  MAGMLPGVECARRRRCHQNKVWSDSPHVAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61 LVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS 94
          LVEA   EDDKLDG A+EAKRRLDERLR+QRKS
Sbjct: 61 LVEA--DEDDKLDGSAREAKRRLDERLRTQRKS 91

BLAST of Spg007603 vs. NCBI nr
Match: XP_022921935.1 (uncharacterized protein LOC111430042 isoform X2 [Cucurbita moschata])

HSP 1 Score: 161.4 bits (407), Expect = 4.0e-36
Identity = 81/93 (87.10%), Postives = 87/93 (93.55%), Query Frame = 0

Query: 1  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSL 60
          MAGMLPGVECARRRRCHQNKVWSDSP +AAQ LTRRS+LCLYTSNHETLLASNPSL+RSL
Sbjct: 1  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61 LVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS 94
          L+EA   EDDKLDG A+EAKRRLDERLR+QRKS
Sbjct: 61 LIEA--DEDDKLDGSAREAKRRLDERLRTQRKS 91

BLAST of Spg007603 vs. NCBI nr
Match: XP_022921934.1 (uncharacterized protein LOC111430042 isoform X1 [Cucurbita moschata])

HSP 1 Score: 161.4 bits (407), Expect = 4.0e-36
Identity = 81/93 (87.10%), Postives = 87/93 (93.55%), Query Frame = 0

Query: 1  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSL 60
          MAGMLPGVECARRRRCHQNKVWSDSP +AAQ LTRRS+LCLYTSNHETLLASNPSL+RSL
Sbjct: 1  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61 LVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS 94
          L+EA   EDDKLDG A+EAKRRLDERLR+QRKS
Sbjct: 61 LIEA--DEDDKLDGSAREAKRRLDERLRTQRKS 91

BLAST of Spg007603 vs. NCBI nr
Match: KAG6589799.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158.7 bits (400), Expect = 2.6e-35
Identity = 80/93 (86.02%), Postives = 86/93 (92.47%), Query Frame = 0

Query: 1  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSL 60
          MAGMLPGVECARRRRCHQNKVWSDSP +AAQ LTRRS+LCLYTSNHET LASNPSL+RSL
Sbjct: 1  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSL 60

Query: 61 LVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS 94
          L+EA   EDDKLDG A+EAKRRLDERLR+QRKS
Sbjct: 61 LIEA--DEDDKLDGSAREAKRRLDERLRTQRKS 91

BLAST of Spg007603 vs. ExPASy TrEMBL
Match: A0A6J1E765 (uncharacterized protein LOC111430042 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430042 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.9e-36
Identity = 81/93 (87.10%), Postives = 87/93 (93.55%), Query Frame = 0

Query: 1  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSL 60
          MAGMLPGVECARRRRCHQNKVWSDSP +AAQ LTRRS+LCLYTSNHETLLASNPSL+RSL
Sbjct: 1  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61 LVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS 94
          L+EA   EDDKLDG A+EAKRRLDERLR+QRKS
Sbjct: 61 LIEA--DEDDKLDGSAREAKRRLDERLRTQRKS 91

BLAST of Spg007603 vs. ExPASy TrEMBL
Match: A0A6J1E1Y4 (uncharacterized protein LOC111430042 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430042 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.9e-36
Identity = 81/93 (87.10%), Postives = 87/93 (93.55%), Query Frame = 0

Query: 1  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSL 60
          MAGMLPGVECARRRRCHQNKVWSDSP +AAQ LTRRS+LCLYTSNHETLLASNPSL+RSL
Sbjct: 1  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61 LVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS 94
          L+EA   EDDKLDG A+EAKRRLDERLR+QRKS
Sbjct: 61 LIEA--DEDDKLDGSAREAKRRLDERLRTQRKS 91

BLAST of Spg007603 vs. ExPASy TrEMBL
Match: A0A6J1C2J4 (uncharacterized protein LOC111006855 OS=Momordica charantia OX=3673 GN=LOC111006855 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 81/94 (86.17%), Postives = 87/94 (92.55%), Query Frame = 0

Query: 1  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSL 60
          MAGMLPGVECARRRRCHQNKVWSDSP +AAQ LTRRS+LCLYTSNHETLLASNPSL+RSL
Sbjct: 1  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSL 60

Query: 61 LVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKSE 95
          L  A + EDDKLD IA+EAKRRLDERLR+QRKSE
Sbjct: 61 L--AAVDEDDKLDEIAREAKRRLDERLRTQRKSE 92

BLAST of Spg007603 vs. ExPASy TrEMBL
Match: A0A6J1JLN2 (uncharacterized protein LOC111485711 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485711 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 79/93 (84.95%), Postives = 85/93 (91.40%), Query Frame = 0

Query: 1  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSL 60
          MAGMLPGVECARRRRCHQNKVWSDSP +AAQ LTRRS+LCLYTSNHETLLASNPSL+RSL
Sbjct: 1  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61 LVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS 94
          L+EA   EDDKL G A+EAKRRLDERLR+Q KS
Sbjct: 61 LIEA--DEDDKLVGSAREAKRRLDERLRTQMKS 91

BLAST of Spg007603 vs. ExPASy TrEMBL
Match: A0A6J1JME7 (uncharacterized protein LOC111485711 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485711 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 79/93 (84.95%), Postives = 85/93 (91.40%), Query Frame = 0

Query: 1  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSL 60
          MAGMLPGVECARRRRCHQNKVWSDSP +AAQ LTRRS+LCLYTSNHETLLASNPSL+RSL
Sbjct: 1  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61 LVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS 94
          L+EA   EDDKL G A+EAKRRLDERLR+Q KS
Sbjct: 61 LIEA--DEDDKLVGSAREAKRRLDERLRTQMKS 91

BLAST of Spg007603 vs. TAIR 10
Match: AT2G15580.2 (RING/U-box superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 8.6e-13
Identity = 47/109 (43.12%), Postives = 64/109 (58.72%), Query Frame = 0

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPPV-----------AAQTLTRRSILCLYTSNHETL 60
           MAGMLPGVECARRRR H       +PP+           A    TRR    LYT+NHE+ 
Sbjct: 1   MAGMLPGVECARRRRFH-----GGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESH 60

Query: 61  LASNPSLQRSLLVEAQLQE-DDKLDGIAKEAKRRLDERLRSQRKSEDGR 98
            A     +RS+  ++  ++ D+KLDG AKEAK+RL++RLR   ++  G+
Sbjct: 61  QAHVSFSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLRIPPRTSSGK 104

BLAST of Spg007603 vs. TAIR 10
Match: AT2G15580.1 (RING/U-box superfamily protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-12
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 0

Query: 1  MAGMLPGVECARRRRCHQNKVWSDSPPV-----------AAQTLTRRSILCLYTSNHETL 60
          MAGMLPGVECARRRR H       +PP+           A    TRR    LYT+NHE+ 
Sbjct: 1  MAGMLPGVECARRRRFH-----GGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESH 60

Query: 61 LASNPSLQRSLLVEAQLQE-DDKLDGIAKEAKRRLDERLR 89
           A     +RS+  ++  ++ D+KLDG AKEAK+RL++RLR
Sbjct: 61 QAHVSFSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLR 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038876903.19.5e-3885.57uncharacterized protein LOC120069257 [Benincasa hispida][more]
XP_023515554.12.3e-3689.25uncharacterized protein LOC111779678 [Cucurbita pepo subsp. pepo][more]
XP_022921935.14.0e-3687.10uncharacterized protein LOC111430042 isoform X2 [Cucurbita moschata][more]
XP_022921934.14.0e-3687.10uncharacterized protein LOC111430042 isoform X1 [Cucurbita moschata][more]
KAG6589799.12.6e-3586.02Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1E7651.9e-3687.10uncharacterized protein LOC111430042 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1E1Y41.9e-3687.10uncharacterized protein LOC111430042 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1C2J41.3e-3586.17uncharacterized protein LOC111006855 OS=Momordica charantia OX=3673 GN=LOC111006... [more]
A0A6J1JLN21.1e-3484.95uncharacterized protein LOC111485711 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1JME71.1e-3484.95uncharacterized protein LOC111485711 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
AT2G15580.28.6e-1343.12RING/U-box superfamily protein [more]
AT2G15580.11.1e-1246.00RING/U-box superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg007603.1Spg007603.1mRNA