Spg007509 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg007509
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	mediator of RNA polymerase II transcription subunit 30
Location	scaffold2: 374597 .. 379504 (-)
RNA-Seq Expression	Spg007509
Synteny	Spg007509

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTTCTCGATTACAAATGAGGGTTAGGGTTTCATGAACATCACAAGTGTGCTTGGAATTGGGATTTTAGGAGAGAAGTTTCTTGCCCTTGATTCAAGCGGATTTCGAAGCGTTTACGAATTCGGAGCATTCTCGATTACAGCAGCATCACAGAAGCTTCTGTTTTTCGTTTGGAAACATATGATGGAAGAGAAACCCGCTAATGTTTTGGCACTTCCCCAGACCACTCAAGAGCTTGCAGTGGAGGGCATCAAGCATCTAGAGGAAACGATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCATCAGCAGCAACGGCTACTTCTGCTTTAACAATTGGCAGTCCAAATGGTCCATCTTCGCATTCCGCGAATGGGGTTGTAAACGGCGATGCAAGCTCCGAAAGCACTAGCCATCACACCGATGGTAGCAGTGGCGGAGGCAGCGGCAGTGGGGGAGCCCTTGAAGAGGCTCGCGCTCGCTACAAGAATTCAGTCCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGTAAAATATCTGAGTGATCTTCCAATTCGCAGTCTTAAGTTCGTTAGCCAGTGTTTCTCATTTTTCATTTCGTTGTTATTTGGGAAAAAATCGAGATCGATACAGAATTATTGGGTTTCCCCATGGTACAAATGCTTTGGTGGACTTACTCCATTTACTATGCATTTGATAGATTGCTTGCATTGACTTGGTGTACACTTATGCCAATTAAGCGATTCTAAGCAGAGTTTCATGTTTATTGATAGGCAGAAGCATATGAACCGGGTACGAGTGGTCATGCATCGCCAGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAAAAAGGTATTTTCTTGTGGCTTGAGGTTGTAAACTCAAGTTAGTAATTTATTTTTCCTCAAAACTTTTAGGATGTACCTGAACACTTCCTTTCATGGAATTACAACCAGTTAAAAATTTCAGGCTAAGATTTCGTGAAGGAACCAAATATTTCTGGAAATAGTTTACTTATTAAGACTTTGGAGTCTACTTTTTAGCTTCAACAACGCATGATATATTGTTATTTTTAGATATATCTGTAGTAAGACTTACTAAAATATCTACAAATACTGATGAAACTGAGAAAGTCTTTAGAGATTTCAAGACAACAGTTCTATTTGTATTGTTGTATCACAGTATTAATCTAAGGAAAGATTTTGAAACTAAATAGGCAATGGAGAAAATCAAATGTTGAAATTAATAACATCTTGGTGGAGTTCAAGTCTCAAAGATTTTTGGTGTACTTACAACCTTGCTTGATTATTAGAAATTGGAAGGCGTTTTTGTGTTAGTTCTTTTGCTCGGGAAGGGGTTCTCTCTCTACCTCTGCCTTTAGGACGTTTTCCTTTTTGTCCAAATGAATATATTTGTCTCAGTTTCTTATAAAAATAAATAAATAACATTATGGAGGATATATCATTGACACTATAGATAATATACTTCTTCATCGTCTTATTTTTATCCTTTGTTTAGGTCCTAGATTGGCATTTTATTTTTCCTTCAACTACTATCTTACAGGGATCCTATACGTGGTGTCTTTGCAGGAACTTGTGGTTAAGAACTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCAGTATGATAAACGCGATTAGCCTTGAGTCTCCTCGATCGAGCTGTTGAATTTGAAATTGTAATGCTCTGTTCTTGAAAAGATGAGCTGTTATTAGATTACATGCCTTCAATGAAAATGGGGTTTATGCCTTTGCCACTTTCACTAAATTGTTAATATGGAGTAGGTCTCTGACAAGTCCAGGAATAAGAAGTTCGATATTTTCATTTAGGATCTACAATTTTGGAGTTGAGAACATACAATAGTAGAAATTCAACGCGATACCCCGAAGCACAAGAACCCATATATAAGAAAATCTGTTAGGTATTTCAGTGAACGTACTAGTGAGTAGTGATTACCTGAGGTTTTTTCAAGTCATCTACAAAAACTGTTTAGACACTTTAACACACACTTGGATACACACAAAAACAACCATATAGCTTCAGCGTATGAAACATAGTTACATTTGCTCCAAATTCTAAAATCTAGCTAGTAAGGAATAAGAATTTATGTGGCCGTGTGGGTTTAATACCCTCGAAGAATGCATTCAGTTGTGCATTGAGGATCTTGTAGTAAGGGAAGATCTCATATCCACAATGGCAGATTCATCTGCACCCAACTTGATGGCCTCTTTGCCTGCTCTGATGAACCTTGAAACAGCTCCTCTAGTGTAATCATGTGCTTCTTTAACTGTCATCTTCTCGGTCATTTCATTAGGGAATCTACTCAGGAAATGGTCACCATTCAGAACAGCAGCTAACTGAACTACCTCGCTCTGAAACTCGGATAGTCCACTGTTTTCGGTTGCTTCTGTTTTCCTCAAAGGTGTCACTTCAGGCAAGGTTACTGCAATAAATGGTTGGGAAATCAACAGAATATGATGTCAGGAAGCTTATAACTCAACTGAAGATTAAGTCTATTTAGATGAATGATCTGGGAAAATGTCGAGTGGTACAACCGGTACAGATAGATACCTGGGCAGTCGGTTCTTGGCGAGGTTAACTGCCCAACAACATGCTCAAATGTCCCAGCCCATGCATCTCTGTGAGTCAGGAAGTTAGAGGAGAGATTGAATATTTTCTTTATGGTAGCAGGGATTGAGGAATGCTCAAACTCAGAGTTTGGTGTAGGTCCGTTGGGACTGCTTATTACTGCAAAACAAACAGAGATTTAGAGCTATATAAACACACCCCATAAGAAGAAATAGCCAAACAAATCAACACATTAACTCTGGATGTGATTTAGAACAAATATCTCCATATTTTTATGTCTTAAAGTCGTTCTGAAGATGCAAACTCTAAATCAAGCAGCACTCTTCATTCCAATCACCAACTTCAGAGGGGAAAATTGAAAAGGACCCCACTGCTTTAAAACGCCGAGGGACATGTAAGTGAAGATGATATGCTAGTTTTGATGGAATGGCACTAAATCTAATCAAGCTCCTAAATCATCTTCATCCCCATAGCTCCAACTGGAGTGGATCCCAAATCCAACCAACTCTTTGACCAGAGGGAGCATGAGGATTCCCTCCTCCCCCTGGCACTTGCCTCCCAAGTAGCCAGCCTGGGATTACTGTAAACCACACAGAGTAAAAACACCGACCATATAGAATTTAGGCCATTATGTGAGAGTATGGGCAGTTTGGAATGACTTTTCAAGTGTTTAAAAACACTCTTTTTAACCATTTCTAAGTCCTTAGAAAGCGATTCTGTTGGTTATGTTAAGAGATGACTAGAAGCTCCCATTTCAAGTTCAAAGGGCTCTTGATTCAGGGGAGAAAAGTAAGTGGTGAGAAGAACTTGGCTTACCGGTCCCTTTCTTAATCCAAGGCGAGACCATAATTGTAGGCACACGAACTCCTAGCCGATCGAACTTGAAGAAATAAGGAGCAGGGCCTGTGTTTCCATCAGGATTAGGGACATTGACAAAAGGAGTCTTGACATGGTCGAAAAATCCACCGTGCTCATCGTAGGTGATTATCAAAAGGGTCTCGTTCCACTGTGGGCTAGCCCTCAGAGTCTCGTAAACCTCTTTCACCAGCTTTTGCCCATTTGCAACATCATGGGATGGATGATCATCATTTGCAGGCATTCCCACAAGATCAAAATACCGTGGCTCAATCACTGTTAAGCTGGGGAGCTTCCCATTTCTAGCATCCTTCTTGAACTTCAAATCGTACTGATGAAACTTGAAAATGTACTTCAATTTCCTCAAGTTTCTATAAAACAGAGTAGTGGGTATGTTCTGAAAGTAAATTCCAAAGTTTATACCATTCTCATGCAGTGAATCAAAAATGGTTTTCTGGGGATACCCCAGAGCCAATTGCTTCTTCACATGGCTTGTTGAACCATGAGAAGTTGCAGAATAAACAAACAGCCTATTGGGTTGAGTTGGGCCAGGAATTGAAGAGAACCATCTATCAAACACTGCAAATTCACGAACCAAAGCTCCATAAATGGGCACAGCTTCAGGTTTGAAGCCTTTCATAACAGTTTCAGAGAGGTTTGGTGACATTGACAGAGCCTGTTCCACAAAGCCAGACATGGAAGGAATGGAATTAGAGCCAAATACCTGCTGTAACACGTCTTCAAACGAATGGCCCGGATCCGGATCTACAAACTCGGCGTCATCAGAGAAGCAAATCGTTTCAGGGTTCGGATTCTTGGTTGAAACAGGGTTGCATTCATCTCCAGTGACGCCATTGATTTGTGGGTCGATGTATTTCTTCATCCATCCAATCATGTGATCGAACGAACGATTCTCCATCACCAAAACCACAACGGTTTTGATGGGTTGTTGCTGGAAACTGCGTTGAGGAAGCCATGAGAGAGCGAGAAAGAGCATGAAAATGAAGGGCAAATGCAATTGCCCTTTGCTTCGCCGCCCTCTCATTGTTATCACTGAGAGCAGAGGCAATGAAACTAGAAGATAACTCTGCAAAATTTACTCTGAGAATCTAAAGAAGACTTGAAAATGGAGAAATTGAGTTGTGGATGAGAATGTTACAGACAAATGCCACTGATCTCTCACGCGGACTTTAAAAAAGCAAAATCTCTGGTTATGACTATTAGAGAGAGAGAGAGAGAGAGAGAGAGTAGCTTAGAGTGGAGAGTGGATTTTGTTTTATACGCAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGAAGTTTCTGGTTG

mRNA sequence

ATGAACATCACAAGTGTGCTTGGAATTGGGATTTTAGGAGAGAAGTTTCTTGCCCTTGATTCAAGCGGATTTCGAAGCGTTTACGAATTCGGAGCATTCTCGATTACAGCAGCATCACAGAAGCTTCTGTTTTTCGTTTGGAAACATATGATGGAAGAGAAACCCGCTAATGTTTTGGCACTTCCCCAGACCACTCAAGAGCTTGCAGTGGAGGGCATCAAGCATCTAGAGGAAACGATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCATCAGCAGCAACGGCTACTTCTGCTTTAACAATTGGCAGTCCAAATGGTCCATCTTCGCATTCCGCGAATGGGGTTGTAAACGGCGATGCAAGCTCCGAAAGCACTAGCCATCACACCGATGGTAGCAGTGGCGGAGGCAGCGGCAGTGGGGGAGCCCTTGAAGAGGCTCGCGCTCGCTACAAGAATTCAGTCCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAGAAGCATATGAACCGGGTACGAGTGGTCATGCATCGCCAGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAAAAAGGAACTTGTGGTTAAGAACTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCAGTATGA

Coding sequence (CDS)

ATGAACATCACAAGTGTGCTTGGAATTGGGATTTTAGGAGAGAAGTTTCTTGCCCTTGATTCAAGCGGATTTCGAAGCGTTTACGAATTCGGAGCATTCTCGATTACAGCAGCATCACAGAAGCTTCTGTTTTTCGTTTGGAAACATATGATGGAAGAGAAACCCGCTAATGTTTTGGCACTTCCCCAGACCACTCAAGAGCTTGCAGTGGAGGGCATCAAGCATCTAGAGGAAACGATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCATCAGCAGCAACGGCTACTTCTGCTTTAACAATTGGCAGTCCAAATGGTCCATCTTCGCATTCCGCGAATGGGGTTGTAAACGGCGATGCAAGCTCCGAAAGCACTAGCCATCACACCGATGGTAGCAGTGGCGGAGGCAGCGGCAGTGGGGGAGCCCTTGAAGAGGCTCGCGCTCGCTACAAGAATTCAGTCCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAGAAGCATATGAACCGGGTACGAGTGGTCATGCATCGCCAGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAAAAAGGAACTTGTGGTTAAGAACTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCAGTATGA

Protein sequence

MNITSVLGIGILGEKFLALDSSGFRSVYEFGAFSITAASQKLLFFVWKHMMEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

Homology

[Close]

BLAST of Spg007509 vs. NCBI nr
Match: XP_004138044.1 (mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN63478.1 hypothetical protein Csa_013518 [Cucumis sativus])

HSP 1 Score: 342.8 bits (878), Expect = 2.4e-90
Identity = 184/198 (92.93%), Postives = 189/198 (95.45%), Query Frame = 0


Query: 51  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATA 110
           MEEK  NVLALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS+A TA
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 111 TSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSVL 170
           TS LTI SP+GPSSHSANGVVNGDASSESTSHHTD S GGGSGSGGALEEAR RYKNSVL
Sbjct: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120

Query: 171 ALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLID 230
           ALRAILAAIPNSQKA+AYE GTSGHASPADQSEIDKLEQHLSNL+KELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 231 QLRDLVADVSTWQSPCSV 249
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of Spg007509 vs. NCBI nr
Match: XP_008464424.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo] >KAA0057767.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis melo var. makuwa] >TYJ98448.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis melo var. makuwa])

HSP 1 Score: 341.7 bits (875), Expect = 5.5e-90
Identity = 184/198 (92.93%), Postives = 188/198 (94.95%), Query Frame = 0


Query: 51  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATA 110
           MEEK   VLALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS+A TA
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 111 TSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSVL 170
           TS LTI SPNGPSSHSANGVVNGDASSESTSHHTD SSGGGSGSGGALEEAR RYKNSVL
Sbjct: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120

Query: 171 ALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLID 230
           ALRAILAAIPNSQKA+AYE GTS HASPADQSEIDKLEQHLSNL+KELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 231 QLRDLVADVSTWQSPCSV 249
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of Spg007509 vs. NCBI nr
Match: XP_022921424.1 (mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_022987135.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita maxima] >XP_023515464.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita pepo subsp. pepo] >KAG6589379.1 Mediator of RNA polymerase II transcription subunit 30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023058.1 Mediator of RNA polymerase II transcription subunit 30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 336.3 bits (861), Expect = 2.3e-88
Identity = 179/198 (90.40%), Postives = 188/198 (94.95%), Query Frame = 0


Query: 51  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATA 110
           MEEKP NVL+LPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS+A T 
Sbjct: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60

Query: 111 TSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSVL 170
           TS LTI SPN PSSHS NGVVNGDASSEST+HHTD SSGGGSGSGGALEEAR RYKNSVL
Sbjct: 61  TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120

Query: 171 ALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLID 230
           ALRAILAAIPNSQKA+A+E GTSGHASPADQSEIDKLEQHLSNL+KEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180

Query: 231 QLRDLVADVSTWQSPCSV 249
           QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198

[Close]

BLAST of Spg007509 vs. NCBI nr
Match: XP_038879540.1 (mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida])

HSP 1 Score: 334.0 bits (855), Expect = 1.1e-87
Identity = 182/199 (91.46%), Postives = 186/199 (93.47%), Query Frame = 0


Query: 50  MMEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAAT 109
           MMEEKP NVLALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS+  T
Sbjct: 1   MMEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTVTT 60

Query: 110 ATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSV 169
           ATS L I SPNGPSSHS NGVVNGDASSESTSHHTD SSGGGSGSGGALEEAR RYKNSV
Sbjct: 61  ATSGLAIASPNGPSSHSVNGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSV 120

Query: 170 LALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLI 229
           LALRAILAAIPNSQKA AYE GTSG  SPADQSEIDKLEQHLS+L+KELVVKNLHIKLLI
Sbjct: 121 LALRAILAAIPNSQKATAYESGTSG--SPADQSEIDKLEQHLSSLRKELVVKNLHIKLLI 180

Query: 230 DQLRDLVADVSTWQSPCSV 249
           DQLRDLVADVSTWQSPCSV
Sbjct: 181 DQLRDLVADVSTWQSPCSV 197

[Close]

BLAST of Spg007509 vs. NCBI nr
Match: XP_022134927.1 (mediator of RNA polymerase II transcription subunit 30 [Momordica charantia])

HSP 1 Score: 320.1 bits (819), Expect = 1.7e-83
Identity = 171/198 (86.36%), Postives = 183/198 (92.42%), Query Frame = 0


Query: 51  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATA 110
           ME+KP ++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS   TA
Sbjct: 1   MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS---TA 60

Query: 111 TSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSVL 170
           TSAL+I SPNGPS HS NGVVNGDASSEST+HH D SSGGG+GSGGALEEAR RY NSVL
Sbjct: 61  TSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120

Query: 171 ALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLID 230
           ALRAILAAIP+SQ A+AYE GTSGHASPADQSEIDKLEQHL NL+KELV KNLH+KLLID
Sbjct: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180

Query: 231 QLRDLVADVSTWQSPCSV 249
           QLRDLVAD+STWQSPCSV
Sbjct: 181 QLRDLVADISTWQSPCSV 195

[Close]

BLAST of Spg007509 vs. ExPASy Swiss-Prot
Match: Q9FMV4 (Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana OX=3702 GN=MED30 PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.8e-43
Identity = 105/187 (56.15%), Postives = 136/187 (72.73%), Query Frame = 0


Query: 64  TTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPS 123
           TTQELA+EG K LEETIE+AFQI+ +MNDELCNP+LWST    +AT +SA T    NG +
Sbjct: 13  TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWST----SATPSSAATTTGSNGSA 72

Query: 124 SHSANGVVNGDASSESTSHHTDGSSGGGSGSGG--ALEEARARYKNSVLALRAILAAIPN 183
             SA+      A+ + TSHH++ + GGG G  G   L+EA  RYKNSV +LRA+LAAIPN
Sbjct: 73  LVSADA-----AAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAAIPN 132

Query: 184 SQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVST 243
           SQKA+A E   +G  SP  + EI+KLE+   +L+ E+  KN+H+K LID+LR+L+AD+ST
Sbjct: 133 SQKAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADIST 189

Query: 244 WQSPCSV 249
           WQSPCSV
Sbjct: 193 WQSPCSV 189

[Close]

BLAST of Spg007509 vs. ExPASy TrEMBL
Match: A0A0A0LNW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001500 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 1.2e-90
Identity = 184/198 (92.93%), Postives = 189/198 (95.45%), Query Frame = 0


Query: 51  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATA 110
           MEEK  NVLALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS+A TA
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 111 TSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSVL 170
           TS LTI SP+GPSSHSANGVVNGDASSESTSHHTD S GGGSGSGGALEEAR RYKNSVL
Sbjct: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120

Query: 171 ALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLID 230
           ALRAILAAIPNSQKA+AYE GTSGHASPADQSEIDKLEQHLSNL+KELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 231 QLRDLVADVSTWQSPCSV 249
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of Spg007509 vs. ExPASy TrEMBL
Match: A0A5A7USU3 (Mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00490 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.6e-90
Identity = 184/198 (92.93%), Postives = 188/198 (94.95%), Query Frame = 0


Query: 51  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATA 110
           MEEK   VLALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS+A TA
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 111 TSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSVL 170
           TS LTI SPNGPSSHSANGVVNGDASSESTSHHTD SSGGGSGSGGALEEAR RYKNSVL
Sbjct: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120

Query: 171 ALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLID 230
           ALRAILAAIPNSQKA+AYE GTS HASPADQSEIDKLEQHLSNL+KELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 231 QLRDLVADVSTWQSPCSV 249
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of Spg007509 vs. ExPASy TrEMBL
Match: A0A1S3CMZ7 (mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 GN=LOC103502315 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.6e-90
Identity = 184/198 (92.93%), Postives = 188/198 (94.95%), Query Frame = 0


Query: 51  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATA 110
           MEEK   VLALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS+A TA
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 111 TSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSVL 170
           TS LTI SPNGPSSHSANGVVNGDASSESTSHHTD SSGGGSGSGGALEEAR RYKNSVL
Sbjct: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120

Query: 171 ALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLID 230
           ALRAILAAIPNSQKA+AYE GTS HASPADQSEIDKLEQHLSNL+KELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 231 QLRDLVADVSTWQSPCSV 249
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of Spg007509 vs. ExPASy TrEMBL
Match: A0A6J1JFZ2 (mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita maxima OX=3661 GN=LOC111484777 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 1.1e-88
Identity = 179/198 (90.40%), Postives = 188/198 (94.95%), Query Frame = 0


Query: 51  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATA 110
           MEEKP NVL+LPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS+A T 
Sbjct: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60

Query: 111 TSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSVL 170
           TS LTI SPN PSSHS NGVVNGDASSEST+HHTD SSGGGSGSGGALEEAR RYKNSVL
Sbjct: 61  TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120

Query: 171 ALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLID 230
           ALRAILAAIPNSQKA+A+E GTSGHASPADQSEIDKLEQHLSNL+KEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180

Query: 231 QLRDLVADVSTWQSPCSV 249
           QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198

[Close]

BLAST of Spg007509 vs. ExPASy TrEMBL
Match: A0A6J1E0F5 (mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita moschata OX=3662 GN=LOC111429707 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 1.1e-88
Identity = 179/198 (90.40%), Postives = 188/198 (94.95%), Query Frame = 0


Query: 51  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATA 110
           MEEKP NVL+LPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS+A T 
Sbjct: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60

Query: 111 TSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSVL 170
           TS LTI SPN PSSHS NGVVNGDASSEST+HHTD SSGGGSGSGGALEEAR RYKNSVL
Sbjct: 61  TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120

Query: 171 ALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLID 230
           ALRAILAAIPNSQKA+A+E GTSGHASPADQSEIDKLEQHLSNL+KEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180

Query: 231 QLRDLVADVSTWQSPCSV 249
           QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198

[Close]

BLAST of Spg007509 vs. TAIR 10
Match: AT5G63480.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 175.6 bits (444), Expect = 4.8e-44
Identity = 105/187 (56.15%), Postives = 136/187 (72.73%), Query Frame = 0


Query: 64  TTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPS 123
           TTQELA+EG K LEETIE+AFQI+ +MNDELCNP+LWST    +AT +SA T    NG +
Sbjct: 13  TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWST----SATPSSAATTTGSNGSA 72

Query: 124 SHSANGVVNGDASSESTSHHTDGSSGGGSGSGG--ALEEARARYKNSVLALRAILAAIPN 183
             SA+      A+ + TSHH++ + GGG G  G   L+EA  RYKNSV +LRA+LAAIPN
Sbjct: 73  LVSADA-----AAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAAIPN 132

Query: 184 SQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVST 243
           SQKA+A E   +G  SP  + EI+KLE+   +L+ E+  KN+H+K LID+LR+L+AD+ST
Sbjct: 133 SQKAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADIST 189

Query: 244 WQSPCSV 249
           WQSPCSV
Sbjct: 193 WQSPCSV 189

The following BLAST results are available for this feature:

BLAST of Spg007509 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138044.1	2.4e-90	92.93	mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN634...	[more]
XP_008464424.1	5.5e-90	92.93	PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]...	[more]
XP_022921424.1	2.3e-88	90.40	mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_...	[more]
XP_038879540.1	1.1e-87	91.46	mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida]	[more]
XP_022134927.1	1.7e-83	86.36	mediator of RNA polymerase II transcription subunit 30 [Momordica charantia]	[more]

BLAST of Spg007509 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMV4	6.8e-43	56.15	Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana O...	[more]

BLAST of Spg007509 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNW4	1.2e-90	92.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001500 PE=4 SV=1	[more]
A0A5A7USU3	2.6e-90	92.93	Mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo var. maku...	[more]
A0A1S3CMZ7	2.6e-90	92.93	mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 G...	[more]
A0A6J1JFZ2	1.1e-88	90.40	mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita maxima OX=36...	[more]
A0A6J1E0F5	1.1e-88	90.40	mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita moschata OX=...	[more]

BLAST of Spg007509 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63480.1	4.8e-44	56.15	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 204..224
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..151
None	No IPR available	PANTHER	PTHR36406:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30	coord: 58..248
IPR034568	Mediator of RNA polymerase II transcription subunit 30	PANTHER	PTHR36406	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30	coord: 58..248

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg007509.1	Spg007509.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016592	mediator complex