Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCCATCAGATTCAGGGATATTGCTGTTCTTTGTTTGGTAGTGTGTATGTCTGCGATTGAATCACACGGCCGAATCATGAGGAAGGACTTGGGCCTTAATCTTGGAGGTATTGGAATTGGCCTTGGTATTGGCTTGGGCTTGGGCTTGGGCGGAGGAAGTGGCTCGGGTTCTGGGTCCGGCTCTGGATCCGGGTCCGGTTCCGGGTCGAGTTCATCTTCGTCATCATACTCGTCGAGCTCTAGCAATGGGGGCTCCGGAGCAGGCTCCGAAGTTGGTTCCTACGCTGGCTCTTACGCTGGGTCAGGTTCGGGAAGGAATGACAGGAATAACGGTGGTTCGGGGTCAGGCTCGGGATACGGCGAGGGTTCCGGCAGAGGAGGCGGCGGCGGTGGAGAAGGTTATGGTGAGGGTCGTGGCTACGGCGAGGGACGTTGTTACCGCGAAGGCGGTAACAATTGA
mRNA sequence
ATGGCGTCCATCAGATTCAGGGATATTGCTGTTCTTTGTTTGGTAGTGTGTATGTCTGCGATTGAATCACACGGCCGAATCATGAGGAAGGACTTGGGCCTTAATCTTGGAGGTATTGGAATTGGCCTTGGTATTGGCTTGGGCTTGGGCTTGGGCGGAGGAAGTGGCTCGGGTTCTGGGTCCGGCTCTGGATCCGGGTCCGGTTCCGGGTCGAGTTCATCTTCGTCATCATACTCGTCGAGCTCTAGCAATGGGGGCTCCGGAGCAGGCTCCGAAGTTGGTTCCTACGCTGGCTCTTACGCTGGGTCAGGTTCGGGAAGGAATGACAGGAATAACGGTGGTTCGGGGTCAGGCTCGGGATACGGCGAGGGTTCCGGCAGAGGAGGCGGCGGCGGTGGAGAAGGTTATGGTGAGGGTCGTGGCTACGGCGAGGGACGTTGTTACCGCGAAGGCGGTAACAATTGA
Coding sequence (CDS)
ATGGCGTCCATCAGATTCAGGGATATTGCTGTTCTTTGTTTGGTAGTGTGTATGTCTGCGATTGAATCACACGGCCGAATCATGAGGAAGGACTTGGGCCTTAATCTTGGAGGTATTGGAATTGGCCTTGGTATTGGCTTGGGCTTGGGCTTGGGCGGAGGAAGTGGCTCGGGTTCTGGGTCCGGCTCTGGATCCGGGTCCGGTTCCGGGTCGAGTTCATCTTCGTCATCATACTCGTCGAGCTCTAGCAATGGGGGCTCCGGAGCAGGCTCCGAAGTTGGTTCCTACGCTGGCTCTTACGCTGGGTCAGGTTCGGGAAGGAATGACAGGAATAACGGTGGTTCGGGGTCAGGCTCGGGATACGGCGAGGGTTCCGGCAGAGGAGGCGGCGGCGGTGGAGAAGGTTATGGTGAGGGTCGTGGCTACGGCGAGGGACGTTGTTACCGCGAAGGCGGTAACAATTGA
Protein sequence
MASIRFRDIAVLCLVVCMSAIESHGRIMRKDLGLNLGGIGIGLGIGLGLGLGGGSGSGSGSGSGSGSGSGSSSSSSSYSSSSSNGGSGAGSEVGSYAGSYAGSGSGRNDRNNGGSGSGSGYGEGSGRGGGGGGEGYGEGRGYGEGRCYREGGNN
Homology
BLAST of Spg007476 vs. NCBI nr
Match:
XP_023515820.1 (putative glycine-rich cell wall structural protein 1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 146.4 bits (368), Expect = 2.1e-31
Identity = 120/159 (75.47%), Postives = 125/159 (78.62%), Query Frame = 0
Query: 7 RDIAVLCLVVCMSAIESHGRIMRKDLGLNLGGIGIGLGIGLGLGLGGGSGSGSGSGSGSG 66
R IAVLC VVCMSAIES GR+ RKDLGL+LGG+G+GLG+GLGLGLGGGSGSGSGSGSGSG
Sbjct: 5 RSIAVLCFVVCMSAIESQGRVARKDLGLDLGGLGVGLGVGLGLGLGGGSGSGSGSGSGSG 64
Query: 67 SGSGSSSSSSSYSSSSSNGGSGAGSEVGSYAGSYA----GSGSGRNDRN-------NGGS 126
SGSGS SSS SSSSS GGSGAGSE GSYAGSYA GS SGRN RN GG
Sbjct: 65 SGSGSYSSSQ--SSSSSYGGSGAGSEAGSYAGSYAGSRGGSDSGRNYRNGGSGYGGGGGG 124
Query: 127 GSGSGYGEGSGRGGGGGGEGYGEGRGYGEGRCYREGGNN 155
G G GYGEG G G G G EGYGEGRGYGEGR Y EGGNN
Sbjct: 125 GRGEGYGEGRGYGEGSGREGYGEGRGYGEGRGYGEGGNN 161
BLAST of Spg007476 vs. NCBI nr
Match:
XP_022135257.1 (glycine-rich cell wall structural protein 2-like [Momordica charantia])
HSP 1 Score: 144.1 bits (362), Expect = 1.0e-30
Identity = 121/157 (77.07%), Postives = 130/157 (82.80%), Query Frame = 0
Query: 1 MASIRFRDIAVLCLVVCMSAIESHGRIMRKDLGLNLGGIGIGLGIGLGLGLGGGSGSGSG 60
MASI R IA +C VVC AIES R+ RKDLGL+LGG+GIGLG G+GLG+GGGSGSG+G
Sbjct: 1 MASI--RAIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAG 60
Query: 61 SGSGSGSGSGSSSSSSSYSSSSSNGGSGAGSEVGSYAGSYA--GSGSGRNDRNNGGSGSG 120
+GSGSGSGSGS SSSSS+SSSSS GGSGAGSE GSYAGS A GSGSGRN R NGGSGSG
Sbjct: 61 AGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRAGSGSGSGRNYR-NGGSGSG 120
Query: 121 SGYGEGSGRGGGGGGEGYGEGRGYGEGRCY-REGGNN 155
SGYGEGSGR G GEGYGEG GYGEGR Y EGGNN
Sbjct: 121 SGYGEGSGR---GNGEGYGEGHGYGEGRGYGGEGGNN 151
BLAST of Spg007476 vs. NCBI nr
Match:
KAG6589746.1 (hypothetical protein SDJN03_15169, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 142.5 bits (358), Expect = 3.0e-30
Identity = 120/167 (71.86%), Postives = 125/167 (74.85%), Query Frame = 0
Query: 7 RDIAVLCLVVCMSAIESHGRIMRKDLGLNLGGIGIGLGIGLGLGLGGGSGSGSGSGSGSG 66
R IAVLC VVCMSAIES GR+ RKDLGL+LGG+G+GLG+GLGLGLGGGSGSGSGSGSGSG
Sbjct: 5 RAIAVLCFVVCMSAIESQGRVARKDLGLDLGGLGVGLGVGLGLGLGGGSGSGSGSGSGSG 64
Query: 67 SGSGSSSSSSSYSSSSSNGGSGAGSEVGSYAGSYA----GSGSGRNDRN----------- 126
SGSGS SSS SSSSS GGSGAGSE GSYAGSYA GS SGRN RN
Sbjct: 65 SGSGSYSSSQ--SSSSSYGGSGAGSEAGSYAGSYAGSRGGSDSGRNYRNGGSGYGEGSGR 124
Query: 127 ----NGGSGSGSGYGEGSGRGGGGGGEGYGEGRGYGEGRCYREGGNN 155
GG G G GYGEG G G G G EGYGEGRGYGEGR Y EGGNN
Sbjct: 125 GYGGGGGGGRGEGYGEGRGYGEGSGREGYGEGRGYGEGRGYGEGGNN 169
BLAST of Spg007476 vs. NCBI nr
Match:
XP_022921885.1 (glycine-rich protein DOT1-like [Cucurbita moschata])
HSP 1 Score: 132.1 bits (331), Expect = 4.1e-27
Identity = 109/150 (72.67%), Postives = 114/150 (76.00%), Query Frame = 0
Query: 7 RDIAVLCLVVCMSAIESHGRIMRKDLGLNLGGIGIGLGIGLGLGLGGGSGSGSGSGSGSG 66
R IAVLC VVCMSAIES GR+ RKDLGL+LGG+G+GLG+GLGLGLGGGSGSGSGSGSGSG
Sbjct: 5 RAIAVLCFVVCMSAIESQGRVARKDLGLDLGGLGVGLGVGLGLGLGGGSGSGSGSGSGSG 64
Query: 67 SGSGSSSS--SSSYSSSSSNGGSGAGSEVGSYAGSYAGSGSGRNDRNNGGSGSGSGYGEG 126
SGSGS S SSS SSSSS GGSGAGSE GSYAGSYAGS GGS SG Y
Sbjct: 65 SGSGSGSGSYSSSQSSSSSYGGSGAGSEAGSYAGSYAGS--------RGGSDSGRNY--- 124
Query: 127 SGRGGGGGGEGYGEGRGYGEGRCYREGGNN 155
GG GYGEGRGYGEGR Y EGGNN
Sbjct: 125 -----RNGGSGYGEGRGYGEGRGYGEGGNN 138
BLAST of Spg007476 vs. NCBI nr
Match:
XP_004146660.2 (glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65265.1 hypothetical protein Csa_020101 [Cucumis sativus])
HSP 1 Score: 128.3 bits (321), Expect = 5.9e-26
Identity = 115/158 (72.78%), Postives = 127/158 (80.38%), Query Frame = 0
Query: 1 MASIRFRDIAVLCLVVCMSAIESHGRIMRKDLGLNLGGIGIGLGIGLGLGLGGGSGSGSG 60
MASI+ I V+CL++ SAI S GR+ RKDLG++LGG+G+GLG G+GLG+ GGSGSGSG
Sbjct: 1 MASIKSLAI-VVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGI-GGSGSGSG 60
Query: 61 SGSGSGSGSGSSSSSSSYSSSSSNGGSGAGSEVGSYAGSYAGS--GSGRNDRNNGGSGSG 120
SGSGSGSGSGSSSSSSSYSSSSS+ GSGAGSE GSYAGSYAGS GSG NGGSG G
Sbjct: 61 SGSGSGSGSGSSSSSSSYSSSSSS-GSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYG 120
Query: 121 SGYGEGSGRGGGG--GGEGYGEGRGYGEGRCYREGGNN 155
SGYG GSGRGGG GEGYGEG GYGEGR Y GG N
Sbjct: 121 SGYGGGSGRGGGSNDNGEGYGEGHGYGEGRGY--GGGN 153
BLAST of Spg007476 vs. ExPASy TrEMBL
Match:
A0A6J1C269 (glycine-rich cell wall structural protein 2-like OS=Momordica charantia OX=3673 GN=LOC111007265 PE=4 SV=1)
HSP 1 Score: 144.1 bits (362), Expect = 5.0e-31
Identity = 121/157 (77.07%), Postives = 130/157 (82.80%), Query Frame = 0
Query: 1 MASIRFRDIAVLCLVVCMSAIESHGRIMRKDLGLNLGGIGIGLGIGLGLGLGGGSGSGSG 60
MASI R IA +C VVC AIES R+ RKDLGL+LGG+GIGLG G+GLG+GGGSGSG+G
Sbjct: 1 MASI--RAIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAG 60
Query: 61 SGSGSGSGSGSSSSSSSYSSSSSNGGSGAGSEVGSYAGSYA--GSGSGRNDRNNGGSGSG 120
+GSGSGSGSGS SSSSS+SSSSS GGSGAGSE GSYAGS A GSGSGRN R NGGSGSG
Sbjct: 61 AGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRAGSGSGSGRNYR-NGGSGSG 120
Query: 121 SGYGEGSGRGGGGGGEGYGEGRGYGEGRCY-REGGNN 155
SGYGEGSGR G GEGYGEG GYGEGR Y EGGNN
Sbjct: 121 SGYGEGSGR---GNGEGYGEGHGYGEGRGYGGEGGNN 151
BLAST of Spg007476 vs. ExPASy TrEMBL
Match:
A0A6J1E720 (glycine-rich protein DOT1-like OS=Cucurbita moschata OX=3662 GN=LOC111430016 PE=4 SV=1)
HSP 1 Score: 132.1 bits (331), Expect = 2.0e-27
Identity = 109/150 (72.67%), Postives = 114/150 (76.00%), Query Frame = 0
Query: 7 RDIAVLCLVVCMSAIESHGRIMRKDLGLNLGGIGIGLGIGLGLGLGGGSGSGSGSGSGSG 66
R IAVLC VVCMSAIES GR+ RKDLGL+LGG+G+GLG+GLGLGLGGGSGSGSGSGSGSG
Sbjct: 5 RAIAVLCFVVCMSAIESQGRVARKDLGLDLGGLGVGLGVGLGLGLGGGSGSGSGSGSGSG 64
Query: 67 SGSGSSSS--SSSYSSSSSNGGSGAGSEVGSYAGSYAGSGSGRNDRNNGGSGSGSGYGEG 126
SGSGS S SSS SSSSS GGSGAGSE GSYAGSYAGS GGS SG Y
Sbjct: 65 SGSGSGSGSYSSSQSSSSSYGGSGAGSEAGSYAGSYAGS--------RGGSDSGRNY--- 124
Query: 127 SGRGGGGGGEGYGEGRGYGEGRCYREGGNN 155
GG GYGEGRGYGEGR Y EGGNN
Sbjct: 125 -----RNGGSGYGEGRGYGEGRGYGEGGNN 138
BLAST of Spg007476 vs. ExPASy TrEMBL
Match:
A0A0A0LTK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1)
HSP 1 Score: 128.3 bits (321), Expect = 2.9e-26
Identity = 115/158 (72.78%), Postives = 127/158 (80.38%), Query Frame = 0
Query: 1 MASIRFRDIAVLCLVVCMSAIESHGRIMRKDLGLNLGGIGIGLGIGLGLGLGGGSGSGSG 60
MASI+ I V+CL++ SAI S GR+ RKDLG++LGG+G+GLG G+GLG+ GGSGSGSG
Sbjct: 1 MASIKSLAI-VVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGI-GGSGSGSG 60
Query: 61 SGSGSGSGSGSSSSSSSYSSSSSNGGSGAGSEVGSYAGSYAGS--GSGRNDRNNGGSGSG 120
SGSGSGSGSGSSSSSSSYSSSSS+ GSGAGSE GSYAGSYAGS GSG NGGSG G
Sbjct: 61 SGSGSGSGSGSSSSSSSYSSSSSS-GSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYG 120
Query: 121 SGYGEGSGRGGGG--GGEGYGEGRGYGEGRCYREGGNN 155
SGYG GSGRGGG GEGYGEG GYGEGR Y GG N
Sbjct: 121 SGYGGGSGRGGGSNDNGEGYGEGHGYGEGRGY--GGGN 153
BLAST of Spg007476 vs. ExPASy TrEMBL
Match:
A0A6J1E521 (putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111430014 PE=4 SV=1)
HSP 1 Score: 124.0 bits (310), Expect = 5.4e-25
Identity = 113/156 (72.44%), Postives = 124/156 (79.49%), Query Frame = 0
Query: 1 MASIRFRDIAVLCLVVCMSAIESHGRIMRKDLGLNLGGIGIGLGIGLGLGLGG-GSGSGS 60
MASI + V+C ++ S I S R+ RKDLGL+LGG+G+G+G G+GLGLGG GSGSGS
Sbjct: 1 MASI--NSLIVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGS 60
Query: 61 GSGSGSGSGSGSSSSSSSYSSSSSNGGSGAGSEVGSYAGSYAGSGSGRNDRNNGGSGSGS 120
GSGSGSGSGS SSSSSSSYSSSS + GSGAGSE GSYAGS AGSGSG N NGGSGSGS
Sbjct: 61 GSGSGSGSGSSSSSSSSSYSSSSGS-GSGAGSEAGSYAGSRAGSGSGPN--RNGGSGSGS 120
Query: 121 GYGEGSGRG-GGGGGEGYGEGRGYGEGRCYREGGNN 155
GYG GSGRG G GGGEGYGEG GYGEGR Y GG N
Sbjct: 121 GYGGGSGRGSGNGGGEGYGEGHGYGEGRGY--GGGN 149
BLAST of Spg007476 vs. ExPASy TrEMBL
Match:
A0A1S3B9N0 (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC103487316 PE=4 SV=1)
HSP 1 Score: 122.5 bits (306), Expect = 1.6e-24
Identity = 111/157 (70.70%), Postives = 124/157 (78.98%), Query Frame = 0
Query: 1 MASIRFRDIAVLCLVVCMSAIESHGRIMRKDLGLNLGGIGIGLGIGLGLGLGGGSGSGSG 60
MASI+ + V+CL++ S S GR+ RKDLG++LGG+G+GLG G+GLG+ GGSGSGSG
Sbjct: 1 MASIKSLAL-VVCLLLSFSVFLSEGRVARKDLGIDLGGLGVGLGAGIGLGI-GGSGSGSG 60
Query: 61 SGSGSGSGSGSSSSSSSYSSSSSNGGSGAGSEVGSYAGSYAGS--GSGRNDRNNGGSGSG 120
SGSGSGSGSGSSSSSSSYSSSSS+ GSGAGSE GSYAGSYAGS GSG NGGSG G
Sbjct: 61 SGSGSGSGSGSSSSSSSYSSSSSS-GSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYG 120
Query: 121 SGYGEGSGRGG-GGGGEGYGEGRGYGEGRCYREGGNN 155
SGYG GSGRGG G GEGYGEG GYGEG Y GG N
Sbjct: 121 SGYGGGSGRGGSNGNGEGYGEGHGYGEGHGY--GGGN 152
BLAST of Spg007476 vs. TAIR 10
Match:
AT4G30460.1 (glycine-rich protein )
HSP 1 Score: 91.7 bits (226), Expect = 5.7e-19
Identity = 92/148 (62.16%), Postives = 108/148 (72.97%), Query Frame = 0
Query: 9 IAVLCLVVCMSAIESHGRIMRKDLGLNLGGIGIGLGIGLGLGLGGGSGSGSGSGSGSGSG 68
+ ++ L++ S + S R+ RKDLGL+LGGIG G+GIG+G+G GGGSGSG+G+GSGSG G
Sbjct: 10 LILITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIG-GGGSGSGAGAGSGSGGG 69
Query: 69 SGSSSSSSSYSSSSSNGGSG--AGSEVGSYAGSYAG------SGSGRNDRNNGGSGSGSG 128
SSSSSSS SSSSS+GG G AGSE GSYAGS+AG SGSGR + GG G G G
Sbjct: 70 GSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGG 129
Query: 129 YGEGSGRGGGGG---GEGYGEGRGYGEG 146
G G GRGGGGG GEGYGEG GYG G
Sbjct: 130 GGGGGGRGGGGGSGNGEGYGEGGGYGGG 156
BLAST of Spg007476 vs. TAIR 10
Match:
AT4G30450.1 (glycine-rich protein )
HSP 1 Score: 77.4 bits (189), Expect = 1.1e-14
Identity = 69/98 (70.41%), Postives = 81/98 (82.65%), Query Frame = 0
Query: 11 VLCLVVCMSAIE-SHGRIMRKDLGLNLGGIGIGLGIGLGLGLGGGSGSGSGSGSGSGSGS 70
+L LVV S + + R+ RKDLG++LGGIGIGLG+GLG+GLGGGSGSG+G+GSGSGSGS
Sbjct: 9 LLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGAGSGSGSGS 68
Query: 71 GSSSSSSSYSSSSSNG-GSGAGSEVGSYAGSYAGSGSG 107
SSSSSSS SSSSS+G G AGS GS+AGS AGSGSG
Sbjct: 69 RSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSG 106
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_023515820.1 | 2.1e-31 | 75.47 | putative glycine-rich cell wall structural protein 1 [Cucurbita pepo subsp. pepo... | [more] |
| XP_022135257.1 | 1.0e-30 | 77.07 | glycine-rich cell wall structural protein 2-like [Momordica charantia] | [more] |
| KAG6589746.1 | 3.0e-30 | 71.86 | hypothetical protein SDJN03_15169, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_022921885.1 | 4.1e-27 | 72.67 | glycine-rich protein DOT1-like [Cucurbita moschata] | [more] |
| XP_004146660.2 | 5.9e-26 | 72.78 | glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65265.1 hypoth... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1C269 | 5.0e-31 | 77.07 | glycine-rich cell wall structural protein 2-like OS=Momordica charantia OX=3673 ... | [more] |
| A0A6J1E720 | 2.0e-27 | 72.67 | glycine-rich protein DOT1-like OS=Cucurbita moschata OX=3662 GN=LOC111430016 PE=... | [more] |
| A0A0A0LTK9 | 2.9e-26 | 72.78 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1 | [more] |
| A0A6J1E521 | 5.4e-25 | 72.44 | putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita mos... | [more] |
| A0A1S3B9N0 | 1.6e-24 | 70.70 | glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1... | [more] |
