Spg007380 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg007380
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty3-gypsy retrotransposon protein
Location	scaffold7: 19978031 .. 19984601 (-)
RNA-Seq Expression	Spg007380
Synteny	Spg007380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGATCCCGAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCTCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAATCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGCTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTATCACTTCCTCAGGAAGCTAAAAGCGTCCTTATTAATGCATTGATAGAGTCTGATGGTACAAACATCCCAACCTCCGAGGCACGCACATGTGCTTCGTGTTGCATGTCTATCGGATTTTCTGATGAAGATTTGTTGTTAGGGTCAAAGCCACACAATAGACCTCTATTCGTCTCAGGATACATTCGAGAACAAAGGGTTAGCCGGATCCTCATCGATGATGGATCAGCTGTCAATATAATGCCTAAGTCAACCATGAAGCAGTTAGGCATCTTGATGGAGGAACTATCAAACAGTAAGTTGGTGATCCAAGGCTTCAATCAGGGGGGACAACGGGCAATTGGCATGATACGCCTTGAACTCATCATTGGAGACTTAAAAGTTGATACTTTGTTCCATGTAATAGATTCTAAGACCACCTATAAGCTGTTGTTAGGTCGTCCTTGGATCCATGGTAATTGAGTCATAACCTCCACATTGCACCAGTGCTTCAAATTCTATCAAGATGGCATCAAGAAAGTTGAAGCTGCACCAACCCATTTTCAGAAGCTGAGTCTCATTTCGCTGATGCAAAGTTTTATCTGAAGAATGAAAACACAGGGGAAACCATACCTGCAGAAATCCCCTTGATAAAAAAGAATGATAAACTCGATTTGGAGCCCCATGCAGATGCAAGAAAAGAAGCTGTTGAAGATATGGATACTTCCGACCTGAAAAAGGGTGAAGCGTCTACAAGCCTTGCGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTAACCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGGTCGGTGATGTTGAAATTTTGAAGGAAAGTTTCACTACGCCTCTTACAAAGATCACAAGACAAGAGGTTAAGAAACCCGAGGATGATCAGATAAAAGCGATCTTGCCTGACAGACGAACTAAACACGGGTTCGACCCCAAGGCATACAAACTTCTAGCAAAAGCAGGTTATGACTTCACAACTCACACTGAGTTTAAAAGTCTAAGGGTTTTTGATGAAAGATCTGAGCTCTCTGCAACGCAGAAGAAACTTCTAAAGGAAGGTTATAGTCTGCCTACAACGAGAAAAGGATTGGGATATAAGTCGCCTGAGCCAGTTCGCATAATAAGAAGAGGGAAGGCGAAAGTGGCAGATACAAATCATATAACAGTAGAAGAGGTTGATGACTCAAAAGAAAAAGAAAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCCCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAGCGGAAGAAGAAAGCACACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTAGGGATGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGGGAAGAGGAGAGTAATTTTTCAACTTCGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAAAAGAACAGTCTGCTTCATCGATATCTCACCGACTTCAATATGAAGATGCGATAAAAAATGAAAAGATCACGAAGGCCGATGGAGAAATTCGTAGTGCTGTTCCTTCACGAATGAAAAGAAAAACCTTTGTTACTGTTGATACGGATGGTTCCTTGAAGGTAAAGCGACGTGATGTTGTCATCACCAATCCTTCGGAAGAAGATAGTGACCAGGAAGAAGAACAAACCTCTTGTCTTCATATCACTGTTGAAGAAGAAACAGAAGTCGAAACGTCTGAAGTAGATGAGGACGAAGCACCTTTATCACTTGAAGACGGCAGCGAATCCACAGTGGATGAGCTTAAAGAGGTAAACCTGGGTACACCAGAAGAACCGCGCCCAACTTTTATAAGCATGTCTCTTACTCCCGAAGAAGAGGGTGAATATATGAGTTTACTCGCTTCGTATAGAGACATCTTCGCCTGGTCATATAAAGAGATGCCTGGACTTGATCCAAAAGTAGTTGTCCATCATCTCGCAATTAAAGAGGGGTATCGACCAGTCAAGCAAGCTCAACGACGCTTTCGCCCTGAACTTATCCCTCAACTCGAAATAGAGGTCAATAAGTTGATAGAAGTAGGATTCATCCGGGAGGTAAAATACCCTACGTGGATAGCCAACATCGTTCCTGTTAGAAAGAAGAATGGACAGCTTCGCGTTTGCATTGACTTTCGCGATTTAAATAACGCATGTCCCAAAGACGATTTTCCACTGCCAATCACAGAAATCATGGTGGATGCTACCACAGGGCATGAAGCTTTGTCTTTTATGGATGGGTCATCGGGCTATAACCAGATTCGAATGGCTCTTGCAGATGAAGAAATGACAGCCTTTCGAACTCCAAAAGGGATATACTGTTACAAAGTGATGCCCTTTGGATTAAAGAATGCTGGAGCTACTTATTAACGTGCTATGCAAAAGGTTTTCGACGATATGCTGCATAAACATGTCGAGTGCTATGTCGATGATCTTGTTGTTAAGTCAAAGAAACGACAAGATCACTTGAAGGATCTAAAAGTGGTCTTTGATCGTTTGAGAAAGTATCAATTGAGGATGAACCCTCTCAAATGTGCATTCGGTGTTACTTCTGGGAAGTTCCTGGGGTTCGTCGTTAGACATCGAGGAATCGAAATAGATCAGTCAAAGATTGACGCCATTCAAAAGATGCCAAGGCCTAAAAACTTACATGAGTTGAGAAGCCTGCAAGGTCGTTTGGCCTACATTCGAAGATTCATCTCTAACTTAACCGGTCGATGCCAACCTTTTCAAAGGCTAATGAGGAAAGGAGAAAAATTCGAGTGGGATGAAGCATGTCAAAACGCCTTCGAAAGCATTAAGAAATATTTGCTTGACCCTCCTGTCTTAGGAGCCTCCATAGCTGGAAAGTCATTGATTCTGTACATCGCTGCTCAAGAAAGATCACTGGGAGCGTTATTGGCACAGGAAGGTGAGAAGGGAAAGGAACGAGCCCTTTATTACTTAAGAAGGACTCTAAATGGAGCTGAGATAAATTACTCACCCATTGAGAAAATGTGCCTTGCCCTTTTCTTCGCTATTGACAAGTTAAGACATTACATGCAAGCTTTCACAGTGCACTTGGTCGCGAAAGCTGATCCTATCAAATACGTTCTATCGAGGCCAGTTATTTCTGGACGCCTAGCTAAGTGGGCCATCTTACTTCAGCAATATGACATAGTGTATGTACCTCAAAAGGCGGTCAAGGGGCAGGCATTAGCCGACTTCTTGGCGAATCATCCAATCCCGTCAGATTGGAAGTTATGTGAAGATCTACCTGATGAAGAAGTCTTCTATGTTGAAATCACGGAACCCTGGACTATGTACTTTGATGGTGCAGCACGAAGAAGTGGGGCAGGGGCAGGAATCGTTTTTATTTCGCCTGAGAAACACATGCTCCCCTATAGTTTCATGCTTGGTGAATTGTGCTCAAACAATGTTGCTGAATATCAAGCGCTGATAATCGGCCTCCAAATGGCCTTGGAAATTGGCATAGCATATATAGAGGTCTATGGCGATTCAAAATTGGTCGTTAGCCAACTCTTACTCGAGTATGAAGTGAAGCATAAAGACTTGAAGCCTTATTTCATCTATGCAAGACAACTGCTAGAAAGGTTTGACAGTATAGTACTGGAGCATGTTCCGAGATCAGAAAATAAAAAGGCAGATGCTCTAGCAAATTTGGCGACTGCCCTAACAATCCCAGAGGATATGTCGATGAACATCTCACTTTGTCAGAAGTGGATTGTGCCACCAATAGAAGATGAAAGTCAAGAAGCAAATATGATCTCTGTTTTTGCAATTGAAGAGGAGGACTGGTGACAGCCCATTATAGATTATCTTCAACATGGAAGACTGCCCACAGATCCCAGACGTAGGGCTGATATACGAAGAAGAGGCGCCCGATTTATCTACTACAAGGAGATCCTTTATCGTCGTTCTTATGAGGGACTCTTCCTTCGATGCCTTGGAAAGGAAGAAGCAGCAAAGGCATTAAATGAGGCACATTCAGGTGTTTGTGGCGCCCATCAGTCGGGTCCAAAACTCCAGTTTCAATTAAAAAGGATGGGATATTATTGGCCTACAATGATTCGAGACTCAATGGAATATGCAAAGAAGTGTGAAGCTTGTCAATTTCATGCAAACTTCATACATCAGCCACCGGAGCCTCTTCATCCGACTGTAGCTTCATGGCCTTTTGAGGCTTGGGGACTTGACCTTGTTGGCCCTATAACACCTAAGTCTTCAGCAGGACATTCTTACATTCTTGCAGGGACGGATTACTTCTCAAGATGGGCTGAAGCTGTCGCGTTGAAAGAAGCCAAGAAGGAAAATGTTGTGGATTTTGTCCGAACTCATATAATCTATCGTTACGGTATCCCTCATCGTATTGTGACAGATAATGGAAGACAATTCTCCAACGGCCTAATGGACAAGTTGTGTGAGAAGTTTAACTTCAAGCAATACAAGTCTTCTATGTACAATGTTGCGGCAAATGGGTTGGCAGAAGCATTCAATAAGACATTGTGTAACTTATTGAAGAAAGTAGTTTCCAAGACAAAGAGAGATTGGCAAGAAAAGATCGGTGAAGTGTTGTGGGCTTACCGAACTACCCATCGCACTCCTACAGGGGTCACACCTTATTCCCTCGTCTATGGGGTAGAAGCTGTGCTCCCGTTAGAAAGAGAGATTCCCTCATTAAGGATGGTCGTCCAAGAAGGATTGACAACGGAAGATAATGCTAGGTTGCGCCTTCAAGAGTTAGAAGCACTTGATGAAGGAAGGTTAGAGACTCAGCAGGCCTTGGAATGCTACCAAGCACGGATGTCTAAAGCCTTTGATAAGAATGTGAAGCTTCGATCATTTCAAGTTGGTGATCTTGTACTCGCTGTTCGAAGACCCATCATCACGACACGACACACAGGGAACAAATTCACACCTAAATGGGATGGACCCTATGTCGTCAAAGAAGTCTACACAAACGGAGCGTACAAGATTGTGGACAAAGATGGATTAAGAATAGGCCCGATAAATGGCAAGTTTCTTAAAAAGTTTTATGCATGAAATGTAATACTCCTTATCGTAAGAGTATAAACTACATGATACTCCTGGCCCGCATGAGTTAAAAAGGTGAGCGGCCCAAAAAATTTGTATATTGAACTACGTTATGACTTGATCCCTTCCCAATTGAAGGGTACGTAGGCAGCTTAAGAAACAAACTTAAGTTCAGTCAAAGCAAAAAAATAAAGAATCCATGTTGTGAATAAAATTCTAAATTTTCTTTATTAAGGCATAAATAAAGTAGAAATTTCTTATACAATCAATTAAAAAATGTCTAATACAACGAACTGAAAGAATATCTAAAAAAAAAATGTTTGCACATGAGAAAAAGAGCTTAGGGTGAACTAAAGGGGTCATGGATTAAGGATTCCATTGAAGGGTTTTAAGCTCGTCACGAGTACTCTCCAAAAGTTCACGAATGATCGCTAGGGTTCGAACGTCTGAAGCGCTAACGGTGGGGGCACACTCGATGTCACTAATTTCCTCACGTATTCTTGAAACTGCAAGTTTTTCATGAGCTAAGTCCTTTTCCTTTTAAGAAACCGAATTGGAAAGGCTTTCTACCTTGGCCTCTGCAGCTGTTAGCTTGGCCTCTAGTTCTGCAACCTTGGTCTTTAGATCTGCAACCTCTGCGACAGAGCGAGTAAGTTGTTTCTGAAGTGCTTCTCCTCAACAACACGATCTTCGATAGACAAAGCCTTCTCTAAATGGAGTTTCTTCGCCTCCAACTGACTATCCCTACTCGAGGGGGTCAGATGAGTAGAGAGCGAAGATTGTAATCCATGGAATTCTCGCGCTTTCTTGAAGTAGTTGCCTACAAATTCTTGCAGAGGTTGCAAGTTGTTTGTAGTGGCCTCTGCCATTACATCAAAGACCTTGTGAGATTCTTGCTCAAGGTGCTCAAGGCTAGCAACATCTTCAAAAGAAGTGCGTACGATCTTCTGTTGTATGCTTGTCCATATGGATAA

mRNA sequence

ATGAAGGGATCCCGAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCTCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAATCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGCTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTATCACTTCCTCAGGAAGCTAAAAGCGGTGAAGCGTCTACAAGCCTTGCGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTAACCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGAAGAAACTTCTAAAGGAAGGTTATAGTCTGCCTACAACGAGAAAAGGATTGGGATATAAGTCGCCTGAGCCAGTTCGCATAATAAGAAGAGGGAAGGCGAAAGTGGCAGATACAAATCATATAACAGTAGAAGAGGTTGATGACTCAAAAGAAAAAGAAAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCCCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAGCGGAAGAAGAAAGCACACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTAGGGATGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGGGAAGAGGAGAGTAATTTTTCAACTTCGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAAAAGAACAGCTTTCTACCTTGGCCTCTGCAGCTGTTAGCTTGGCCTCTAGTTCTGCAACCTTGGTCTTTAGATCTGCAACCTCTGCGACAGAGCGAAGGTTGCAAGTTGTTTGTAGTGGCCTCTGCCATTACATCAAAGACCTTGTGAGATTCTTGCTCAAGGTGCTCAAGGCTAGCAACATCTTCAAAAGAAGTGCGTACGATCTTCTGTTGTATGCTTGTCCATATGGATAA

Coding sequence (CDS)

ATGAAGGGATCCCGAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCTCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAATCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGCTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTATCACTTCCTCAGGAAGCTAAAAGCGGTGAAGCGTCTACAAGCCTTGCGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTAACCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGAAGAAACTTCTAAAGGAAGGTTATAGTCTGCCTACAACGAGAAAAGGATTGGGATATAAGTCGCCTGAGCCAGTTCGCATAATAAGAAGAGGGAAGGCGAAAGTGGCAGATACAAATCATATAACAGTAGAAGAGGTTGATGACTCAAAAGAAAAAGAAAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCCCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAGCGGAAGAAGAAAGCACACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTAGGGATGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGGGAAGAGGAGAGTAATTTTTCAACTTCGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAAAAGAACAGCTTTCTACCTTGGCCTCTGCAGCTGTTAGCTTGGCCTCTAGTTCTGCAACCTTGGTCTTTAGATCTGCAACCTCTGCGACAGAGCGAAGGTTGCAAGTTGTTTGTAGTGGCCTCTGCCATTACATCAAAGACCTTGTGAGATTCTTGCTCAAGGTGCTCAAGGCTAGCAACATCTTCAAAAGAAGTGCGTACGATCTTCTGTTGTATGCTTGTCCATATGGATAA

Protein sequence

MKGSREKYVSIEDENEGWTLVVRRKKQKQSYARKESLLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDNQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKSGEASTSLAKPKVVKDEKCSNSPNLRYVPLSRRKKGESPFTECSESIKKKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPSVFRRLSMPIRDEESTFSTPNVTRPSAFQRLNMPIGEEESNFSTSDVTRPSVFQRLSVTTRRDKKEQLSTLASAAVSLASSSATLVFRSATSATERRLQVVCSGLCHYIKDLVRFLLKVLKASNIFKRSAYDLLLYACPYG

Homology

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BLAST of Spg007380 vs. NCBI nr
Match: KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 177.9 bits (450), Expect = 1.8e-40
Identity = 155/480 (32.29%), Postives = 208/480 (43.33%), Query Frame = 0


Query: 4   SREKYVSIEDENEGWTLVVRRKKQKQSYARKESLLFRDNKRKAKSQKKKGKKKSRRSKPV 63
           S+EK   IE+++EGWT+V RRKK+K +  +KES L+ + +R  K+QK K KKK+R+ K V
Sbjct: 467 SQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLV 526

Query: 64  MEESEDFFCPPQPITLAEYFPRRFLDDNQGEALETVT-----------------CHIVDV 123
            E+ +DF    + +TLA++FP RFL D+Q E    V                  C  +D 
Sbjct: 527 HEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDF 586

Query: 124 VEDD--------DVPTSSSG---------------------------------------- 183
            ++D        + P   SG                                        
Sbjct: 587 SDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSK 646

Query: 184 -----------------------------TVAVP--GDLSSFSIKDLLSLPQEAKSG--- 243
                                        +V VP      +  +K L S      +G   
Sbjct: 647 LVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFH 706

Query: 244 ----EASTSLAKPKVVKDEKCSNSPNLRYVPLSRRKKGESPFTECSESIK---------- 303
               EASTS AK  +V DEK SN P LRYVPLSRRKKGESPF E  + +K          
Sbjct: 707 SGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKES 766

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BLAST of Spg007380 vs. NCBI nr
Match: TYK05005.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 174.1 bits (440), Expect = 2.6e-39
Identity = 160/561 (28.52%), Postives = 210/561 (37.43%), Query Frame = 0


Query: 4   SREKYVSIEDENEGWTLVVRRKKQKQSYARKESLLFRDNKRKAKSQKKKGKKKSRRSKPV 63
           S+EK   IE+++E WT+V RRKK+K +  +KE   +R+ +R  K+QK K KKK+R+ K +
Sbjct: 363 SQEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKKKKTRKLKLM 422

Query: 64  MEESEDFFCPPQPITLAEYFPRRFLDDNQGEALETVTCHIVDVVEDDDVPTSSSGTVAVP 123
            +E +DF    + ITLA++FP RFL D+Q E    V CH ++  E++ +P  S     V 
Sbjct: 423 HKEDKDFPRTQRLITLADFFPTRFLGDHQDENPGVVACHAINATEEESIPLRSLEEEKVS 482

Query: 124 GDLSSFSIKDLLSLPQEAKS---------------------------------------- 183
            DLS F++ DLLSLPQE K+                                        
Sbjct: 483 KDLSRFNVDDLLSLPQEIKTILINALLNSAASSSSASTVTYESTPYCMSIDFSNDDLLLG 542

Query: 184 ------------------------------------------------------------ 243
                                                                       
Sbjct: 543 SKLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTIRQLGILMKELSNSKLVIQGFNQ 602

Query: 244 ------------------------------------------------------------ 303
                                                                       
Sbjct: 603 GSQRVIDGVKKVEADSNPFSEAESHFADAKFYLKNDSSPEVVSVEVPLVNREDNLQLKSL 662

Query: 304 ----------------GEASTSLAKPKVVKDEKCSNSPNLRYVPLSRRKKGESPFTECSE 312
                            EASTS AK  ++ DEK SN   LRYVPLSRRKKGESPF E  +
Sbjct: 663 ASKEPHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGESPFVESPQ 722

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BLAST of Spg007380 vs. NCBI nr
Match: KAA0055957.1 (uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 172.2 bits (435), Expect = 9.9e-39
Identity = 110/264 (41.67%), Postives = 146/264 (55.30%), Query Frame = 0


Query: 107 VEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKSG-------EASTSLAKPKVVKDE 166
           +++D  P   S  V +     +  +K L S       G       EAST+ AK  ++ DE
Sbjct: 160 LKNDSSPEVVSVEVPLVNREDNLQLKSLASKEPHKSIGTFHSGKSEASTNTAKSVILMDE 219

Query: 167 KCSNSPNLRYVPLSRRKKGESPFTECSESIK----------------------------- 226
           K SN P LRYVPLSRRKKGESPF E  + +K                             
Sbjct: 220 KTSNPPILRYVPLSRRKKGESPFVESPQGLKRRTKDGFDPKAYKLMAKAGYDFITHTEFK 279

Query: 227 --------------KKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEV 286
                         KKLL+EG+ +P +RKGLGYKSPEP+RI R+GK KV D NHITV+EV
Sbjct: 280 SLKIHEQPKLSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKKKVVDNNHITVKEV 339

Query: 287 DDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPSVFRRLSMP 321
           D  +EKE  +QRTS F RI P VARA VF+RLS+ EA+ +  Q T++  R S F+RL++ 
Sbjct: 340 DSMEEKEGDNQRTSTFDRISPHVARAPVFERLSMTEAKRKDHQSTSNLDRRSAFQRLTIT 399

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BLAST of Spg007380 vs. NCBI nr
Match: KAA0043405.1 (hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 169.9 bits (429), Expect = 4.9e-38
Identity = 96/193 (49.74%), Postives = 125/193 (64.77%), Query Frame = 0


Query: 141 AKSGEASTSLAKPKVVKDEKCSNSPNLRYVPLSRRKKGESPFTECSESIK---------- 200
           ++ GEASTS  K  ++ DEK SN   LRYVPLSRR+KGESPF +  + +K          
Sbjct: 69  SRKGEASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQGLKVGDMKQPKLS 128

Query: 201 ---KKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQ 260
              KKLL+EG+ +P +RKG GYKSPEP+ IIR+ K KV D+NHITV EVD  +EKE   Q
Sbjct: 129 LIQKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVGEVDSMEEKEGGSQ 188

Query: 261 RTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPSVFRRLSMPIRDEESTFSTP 320
           R S F +IRP V R  VF+RLSV + E +  Q T+S  + S  +RL+M  + E+ T    
Sbjct: 189 RISAFDQIRPHVVRTTVFERLSVTKTERKCHQSTSSLNKRSALQRLTMTFKKEKCTCQAL 248

[Close]

BLAST of Spg007380 vs. NCBI nr
Match: TYK28162.1 (uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 168.7 bits (426), Expect = 1.1e-37
Identity = 113/285 (39.65%), Postives = 150/285 (52.63%), Query Frame = 0


Query: 99  VTCHIVDV---VEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKSG-------EAST 158
           V  H  D    +++D  P   S  V +     +  +K L S       G       EAST
Sbjct: 113 VESHFADAKFYLKNDSSPEVVSLEVPLVNREDNLQLKSLASKEPHKSIGTFHSGKSEAST 172

Query: 159 SLAKPKVVKDEKCSNSPNLRYVPLSRRKKGESPFTECSESIK------------------ 218
           + AK  ++ DEK SN P LRYVPLSRRKKGESPF E  + +K                  
Sbjct: 173 NTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQGLKIDLTEASLPQRRTKDGFD 232

Query: 219 -----------------------------------KKLLKEGYSLPTTRKGLGYKSPEPV 278
                                              KKLL+EG+ +P +RKGLGYKSPEP+
Sbjct: 233 PKAYKLMAKAGYDFTTHTDFKSLKIHEQPKLSSTQKKLLREGHVIPMSRKGLGYKSPEPI 292

Query: 279 RIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEE 321
           RI R+GK KV D+NHITV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ EAE 
Sbjct: 293 RITRKGKEKVVDSNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPVFERLSMTEAER 352

[Close]

BLAST of Spg007380 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 8.7e-41
Identity = 155/480 (32.29%), Postives = 208/480 (43.33%), Query Frame = 0


Query: 4   SREKYVSIEDENEGWTLVVRRKKQKQSYARKESLLFRDNKRKAKSQKKKGKKKSRRSKPV 63
           S+EK   IE+++EGWT+V RRKK+K +  +KES L+ + +R  K+QK K KKK+R+ K V
Sbjct: 467 SQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLV 526

Query: 64  MEESEDFFCPPQPITLAEYFPRRFLDDNQGEALETVT-----------------CHIVDV 123
            E+ +DF    + +TLA++FP RFL D+Q E    V                  C  +D 
Sbjct: 527 HEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDF 586

Query: 124 VEDD--------DVPTSSSG---------------------------------------- 183
            ++D        + P   SG                                        
Sbjct: 587 SDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSK 646

Query: 184 -----------------------------TVAVP--GDLSSFSIKDLLSLPQEAKSG--- 243
                                        +V VP      +  +K L S      +G   
Sbjct: 647 LVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFH 706

Query: 244 ----EASTSLAKPKVVKDEKCSNSPNLRYVPLSRRKKGESPFTECSESIK---------- 303
               EASTS AK  +V DEK SN P LRYVPLSRRKKGESPF E  + +K          
Sbjct: 707 SGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKES 766

[Close]

BLAST of Spg007380 vs. ExPASy TrEMBL
Match: A0A5D3C0W6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002360 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-39
Identity = 160/561 (28.52%), Postives = 210/561 (37.43%), Query Frame = 0


Query: 4   SREKYVSIEDENEGWTLVVRRKKQKQSYARKESLLFRDNKRKAKSQKKKGKKKSRRSKPV 63
           S+EK   IE+++E WT+V RRKK+K +  +KE   +R+ +R  K+QK K KKK+R+ K +
Sbjct: 363 SQEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKKKKTRKLKLM 422

Query: 64  MEESEDFFCPPQPITLAEYFPRRFLDDNQGEALETVTCHIVDVVEDDDVPTSSSGTVAVP 123
            +E +DF    + ITLA++FP RFL D+Q E    V CH ++  E++ +P  S     V 
Sbjct: 423 HKEDKDFPRTQRLITLADFFPTRFLGDHQDENPGVVACHAINATEEESIPLRSLEEEKVS 482

Query: 124 GDLSSFSIKDLLSLPQEAKS---------------------------------------- 183
            DLS F++ DLLSLPQE K+                                        
Sbjct: 483 KDLSRFNVDDLLSLPQEIKTILINALLNSAASSSSASTVTYESTPYCMSIDFSNDDLLLG 542

Query: 184 ------------------------------------------------------------ 243
                                                                       
Sbjct: 543 SKLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTIRQLGILMKELSNSKLVIQGFNQ 602

Query: 244 ------------------------------------------------------------ 303
                                                                       
Sbjct: 603 GSQRVIDGVKKVEADSNPFSEAESHFADAKFYLKNDSSPEVVSVEVPLVNREDNLQLKSL 662

Query: 304 ----------------GEASTSLAKPKVVKDEKCSNSPNLRYVPLSRRKKGESPFTECSE 312
                            EASTS AK  ++ DEK SN   LRYVPLSRRKKGESPF E  +
Sbjct: 663 ASKEPHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGESPFVESPQ 722

[Close]

BLAST of Spg007380 vs. ExPASy TrEMBL
Match: A0A5A7UMY2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00830 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.8e-39
Identity = 110/264 (41.67%), Postives = 146/264 (55.30%), Query Frame = 0


Query: 107 VEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKSG-------EASTSLAKPKVVKDE 166
           +++D  P   S  V +     +  +K L S       G       EAST+ AK  ++ DE
Sbjct: 160 LKNDSSPEVVSVEVPLVNREDNLQLKSLASKEPHKSIGTFHSGKSEASTNTAKSVILMDE 219

Query: 167 KCSNSPNLRYVPLSRRKKGESPFTECSESIK----------------------------- 226
           K SN P LRYVPLSRRKKGESPF E  + +K                             
Sbjct: 220 KTSNPPILRYVPLSRRKKGESPFVESPQGLKRRTKDGFDPKAYKLMAKAGYDFITHTEFK 279

Query: 227 --------------KKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEV 286
                         KKLL+EG+ +P +RKGLGYKSPEP+RI R+GK KV D NHITV+EV
Sbjct: 280 SLKIHEQPKLSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKKKVVDNNHITVKEV 339

Query: 287 DDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPSVFRRLSMP 321
           D  +EKE  +QRTS F RI P VARA VF+RLS+ EA+ +  Q T++  R S F+RL++ 
Sbjct: 340 DSMEEKEGDNQRTSTFDRISPHVARAPVFERLSMTEAKRKDHQSTSNLDRRSAFQRLTIT 399

[Close]

BLAST of Spg007380 vs. ExPASy TrEMBL
Match: A0A5A7TPR5 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00040 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.4e-38
Identity = 96/193 (49.74%), Postives = 125/193 (64.77%), Query Frame = 0


Query: 141 AKSGEASTSLAKPKVVKDEKCSNSPNLRYVPLSRRKKGESPFTECSESIK---------- 200
           ++ GEASTS  K  ++ DEK SN   LRYVPLSRR+KGESPF +  + +K          
Sbjct: 69  SRKGEASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQGLKVGDMKQPKLS 128

Query: 201 ---KKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQ 260
              KKLL+EG+ +P +RKG GYKSPEP+ IIR+ K KV D+NHITV EVD  +EKE   Q
Sbjct: 129 LIQKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVGEVDSMEEKEGGSQ 188

Query: 261 RTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPSVFRRLSMPIRDEESTFSTP 320
           R S F +IRP V R  VF+RLSV + E +  Q T+S  + S  +RL+M  + E+ T    
Sbjct: 189 RISAFDQIRPHVVRTTVFERLSVTKTERKCHQSTSSLNKRSALQRLTMTFKKEKCTCQAL 248

[Close]

BLAST of Spg007380 vs. ExPASy TrEMBL
Match: A0A5D3DXC7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00760 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.3e-38
Identity = 113/285 (39.65%), Postives = 150/285 (52.63%), Query Frame = 0


Query: 99  VTCHIVDV---VEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKSG-------EAST 158
           V  H  D    +++D  P   S  V +     +  +K L S       G       EAST
Sbjct: 113 VESHFADAKFYLKNDSSPEVVSLEVPLVNREDNLQLKSLASKEPHKSIGTFHSGKSEAST 172

Query: 159 SLAKPKVVKDEKCSNSPNLRYVPLSRRKKGESPFTECSESIK------------------ 218
           + AK  ++ DEK SN P LRYVPLSRRKKGESPF E  + +K                  
Sbjct: 173 NTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQGLKIDLTEASLPQRRTKDGFD 232

Query: 219 -----------------------------------KKLLKEGYSLPTTRKGLGYKSPEPV 278
                                              KKLL+EG+ +P +RKGLGYKSPEP+
Sbjct: 233 PKAYKLMAKAGYDFTTHTDFKSLKIHEQPKLSSTQKKLLREGHVIPMSRKGLGYKSPEPI 292

Query: 279 RIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEE 321
           RI R+GK KV D+NHITV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ EAE 
Sbjct: 293 RITRKGKEKVVDSNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPVFERLSMTEAER 352

The following BLAST results are available for this feature:

BLAST of Spg007380 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061113.1	1.8e-40	32.29	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp...	[more]
TYK05005.1	2.6e-39	28.52	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0055957.1	9.9e-39	41.67	uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]	[more]
KAA0043405.1	4.9e-38	49.74	hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa]	[more]
TYK28162.1	1.1e-37	39.65	uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]	[more]

BLAST of Spg007380 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg007380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BY54	8.7e-41	32.29	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3C0W6	1.3e-39	28.52	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UMY2	4.8e-39	41.67	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7TPR5	2.4e-38	49.74	RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DXC7	5.3e-38	39.65	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Spg007380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg007380.1	Spg007380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process