Spg007160 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg007160
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA repair RAD52-like protein 2, chloroplastic
Location	scaffold9: 47616546 .. 47617175 (+)
RNA-Seq Expression	Spg007160
Synteny	Spg007160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTCCAAACATATGCTCATTCTTGGCTCTTAGGCCCTCGCCTCCCTGCATTTTCCTCCCTTCCCTCTTCCTACTCAGTTAATGAGATCCAACTCCCCCAAATTTCCACCACTCCAAGACGCCATCTTCATCTTGTCTGCTCCAGTAGTGATGCTAGTGGTAGTAAGAAGGGCGTACCCAATTCTAACTATGTCGTTCCACTTAATAAATCTTTTTCCCCGGCTAACTCATCCTGCATCACTCGTCCCCTCGCTGAGATCCTCCGTGATCTAAACAAGAGGATCCCTGATAACATTGCTCAAAAAGTCCCTCATTCTGACACCGCCCTCGATCGTCCTCCCGCTACTTTCATCCCCTGGTTTCATGCAAATAGGATGCTGAGTTTCTATGCCCCTGGATGGTGTGGAGAAATACGAGATGTCATATTCTCTGATAATGGTAGTGTGACTGTTGTTTATCGTGTGACGGTAAGAGGATCTGATGGAGAGGCACACCGTGAATCGACTGGAACAGTATCAGCCACTGATAGCAACATTGAAGATCCTGTAGCTGCTGCGGAGGAAATAGCTTTTTGCAAGGCTTGTGCAAGATTTGGCCTCGGGTTGTATCTCTATCATGAAGAATGA

mRNA sequence

ATGGCTCTCCAAACATATGCTCATTCTTGGCTCTTAGGCCCTCGCCTCCCTGCATTTTCCTCCCTTCCCTCTTCCTACTCAGTTAATGAGATCCAACTCCCCCAAATTTCCACCACTCCAAGACGCCATCTTCATCTTGTCTGCTCCAGTAGTGATGCTAGTGGTAGTAAGAAGGGCGTACCCAATTCTAACTATGTCGTTCCACTTAATAAATCTTTTTCCCCGGCTAACTCATCCTGCATCACTCGTCCCCTCGCTGAGATCCTCCGTGATCTAAACAAGAGGATCCCTGATAACATTGCTCAAAAAGTCCCTCATTCTGACACCGCCCTCGATCGTCCTCCCGCTACTTTCATCCCCTGGTTTCATGCAAATAGGATGCTGAGTTTCTATGCCCCTGGATGGTGTGGAGAAATACGAGATGTCATATTCTCTGATAATGGTAGTGTGACTGTTGTTTATCGTGTGACGGTAAGAGGATCTGATGGAGAGGCACACCGTGAATCGACTGGAACAGTATCAGCCACTGATAGCAACATTGAAGATCCTGTAGCTGCTGCGGAGGAAATAGCTTTTTGCAAGGCTTGTGCAAGATTTGGCCTCGGGTTGTATCTCTATCATGAAGAATGA

Coding sequence (CDS)

ATGGCTCTCCAAACATATGCTCATTCTTGGCTCTTAGGCCCTCGCCTCCCTGCATTTTCCTCCCTTCCCTCTTCCTACTCAGTTAATGAGATCCAACTCCCCCAAATTTCCACCACTCCAAGACGCCATCTTCATCTTGTCTGCTCCAGTAGTGATGCTAGTGGTAGTAAGAAGGGCGTACCCAATTCTAACTATGTCGTTCCACTTAATAAATCTTTTTCCCCGGCTAACTCATCCTGCATCACTCGTCCCCTCGCTGAGATCCTCCGTGATCTAAACAAGAGGATCCCTGATAACATTGCTCAAAAAGTCCCTCATTCTGACACCGCCCTCGATCGTCCTCCCGCTACTTTCATCCCCTGGTTTCATGCAAATAGGATGCTGAGTTTCTATGCCCCTGGATGGTGTGGAGAAATACGAGATGTCATATTCTCTGATAATGGTAGTGTGACTGTTGTTTATCGTGTGACGGTAAGAGGATCTGATGGAGAGGCACACCGTGAATCGACTGGAACAGTATCAGCCACTGATAGCAACATTGAAGATCCTGTAGCTGCTGCGGAGGAAATAGCTTTTTGCAAGGCTTGTGCAAGATTTGGCCTCGGGTTGTATCTCTATCATGAAGAATGA

Protein sequence

MALQTYAHSWLLGPRLPAFSSLPSSYSVNEIQLPQISTTPRRHLHLVCSSSDASGSKKGVPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKVPHSDTALDRPPATFIPWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACARFGLGLYLYHEE

Homology

[Close]

BLAST of Spg007160 vs. NCBI nr
Match: XP_022940851.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >XP_022940852.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >XP_022940853.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >KAG6608636.1 DNA repair RAD52-like protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037953.1 DNA repair RAD52-like protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 391.3 bits (1004), Expect = 5.1e-105
Identity = 196/209 (93.78%), Postives = 200/209 (95.69%), Query Frame = 0


Query: 1   MALQTYAHSWLLGPRLPAFSSLPSSYSVNEIQLPQISTTPRRHLHLVCSSSDASGSKKGV 60
           MALQTYAHS LLGPRLPAFS LPSSYSV+EI+LPQIST  RRHLHLVCSSSDASG KKGV
Sbjct: 1   MALQTYAHSQLLGPRLPAFSFLPSSYSVSEIRLPQISTATRRHLHLVCSSSDASG-KKGV 60

Query: 61  PNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKVPHSDTALDRPPATFIP 120
           PN+NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA KVPHSD   +RPPATFIP
Sbjct: 61  PNTNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAPKVPHSDPQ-NRPPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 207

[Close]

BLAST of Spg007160 vs. NCBI nr
Match: XP_023522333.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023522340.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023522347.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 388.3 bits (996), Expect = 4.3e-104
Identity = 195/209 (93.30%), Postives = 199/209 (95.22%), Query Frame = 0


Query: 1   MALQTYAHSWLLGPRLPAFSSLPSSYSVNEIQLPQISTTPRRHLHLVCSSSDASGSKKGV 60
           MALQTYAHS LLGPRLPAFS LPSSYSV+EI+LPQIST  RRHLHLVCSSSDASG KKGV
Sbjct: 1   MALQTYAHSQLLGPRLPAFSFLPSSYSVSEIRLPQISTATRRHLHLVCSSSDASG-KKGV 60

Query: 61  PNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKVPHSDTALDRPPATFIP 120
           PN+NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA KVP SD   +RPPATFIP
Sbjct: 61  PNTNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAPKVPQSDPQ-NRPPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 207

[Close]

BLAST of Spg007160 vs. NCBI nr
Match: XP_022982164.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucurbita maxima] >XP_022982165.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita maxima] >XP_022982166.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 384.0 bits (985), Expect = 8.1e-103
Identity = 192/209 (91.87%), Postives = 198/209 (94.74%), Query Frame = 0


Query: 1   MALQTYAHSWLLGPRLPAFSSLPSSYSVNEIQLPQISTTPRRHLHLVCSSSDASGSKKGV 60
           MALQTYAH  LLGPRLPAFS LPSSYSV+EI+LPQIST  RRHLHLVCSSS+ASG KKGV
Sbjct: 1   MALQTYAHFQLLGPRLPAFSFLPSSYSVSEIRLPQISTATRRHLHLVCSSSEASG-KKGV 60

Query: 61  PNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKVPHSDTALDRPPATFIP 120
           PN+NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA KVP SD   +RPPATFIP
Sbjct: 61  PNTNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAPKVPQSDPQ-NRPPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSN+
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNV 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 207

[Close]

BLAST of Spg007160 vs. NCBI nr
Match: XP_004145544.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucumis sativus] >XP_031740574.1 DNA repair RAD52-like protein 2, chloroplastic [Cucumis sativus] >KGN55506.1 hypothetical protein Csa_011927 [Cucumis sativus])

HSP 1 Score: 371.7 bits (953), Expect = 4.1e-99
Identity = 188/210 (89.52%), Postives = 193/210 (91.90%), Query Frame = 0


Query: 1   MALQTYAHSWLLGPRLPAFSSLPSSYSVNEIQLPQISTTP-RRHLHLVCSSSDASGSKKG 60
           MALQTYAHS L GP L A SS+ SSYS +EI+LP  STT  RRHL LVCSSSDA+ +KKG
Sbjct: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKVPHSDTALDRPPATFI 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQK PHSDT  DR PATFI
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTN-DRSPATFI 120

Query: 121 PWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSN 180
           PWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSN
Sbjct: 121 PWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSN 180

Query: 181 IEDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           IEDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 IEDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of Spg007160 vs. NCBI nr
Match: XP_008452970.1 (PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo] >XP_016901316.1 PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo] >KAA0064645.1 uncharacterized protein E6C27_scaffold255G003690 [Cucumis melo var. makuwa] >TYK19947.1 uncharacterized protein E5676_scaffold134G00600 [Cucumis melo var. makuwa])

HSP 1 Score: 370.9 bits (951), Expect = 7.1e-99
Identity = 188/210 (89.52%), Postives = 192/210 (91.43%), Query Frame = 0


Query: 1   MALQTYAHSWLLGPRLPAFSSLPSSYSVNEIQLPQISTTPRR-HLHLVCSSSDASGSKKG 60
           MALQTYAHS LLGP   A SS+ SSYS +EI+LP  STT RR HL LVCSSSDA+ SKKG
Sbjct: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLSSTTSRRPHLRLVCSSSDANSSKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKVPHSDTALDRPPATFI 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQK PHSDT  DR P TFI
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTH-DRSPTTFI 120

Query: 121 PWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSN 180
           PWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSN
Sbjct: 121 PWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSN 180

Query: 181 IEDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           IEDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 IEDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of Spg007160 vs. ExPASy Swiss-Prot
Match: Q9FIJ4 (DNA repair RAD52-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RAD52-2 PE=1 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.6e-61
Identity = 113/155 (72.90%), Postives = 131/155 (84.52%), Query Frame = 0


Query: 54  SGSKKGVPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKVPHSDTALDR 113
           +G KK VPNSNYVVP++K    ++SS ITRPL EILRDLNK+IPDNI +   H   +   
Sbjct: 50  AGKKKAVPNSNYVVPIDKF---SSSSSITRPLIEILRDLNKKIPDNIVKS--HDPPSTSA 109

Query: 114 PPATFIPWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTV 173
             + FIPW+HANRMLSFYAPGWCGE+RDVIFS+NG+VTVVYR+T+RGSDGEAHRESTGTV
Sbjct: 110 ATSGFIPWYHANRMLSFYAPGWCGEVRDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTV 169

Query: 174 SATDSNIEDPVAAAEEIAFCKACARFGLGLYLYHE 209
           + TD +IEDPV AAEEIAFC+ACARFGLGLYLYHE
Sbjct: 170 TTTDDHIEDPVTAAEEIAFCRACARFGLGLYLYHE 199

[Close]

BLAST of Spg007160 vs. ExPASy Swiss-Prot
Match: Q9FVV7 (DNA repair RAD52-like protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RAD52-1 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-29
Identity = 65/133 (48.87%), Postives = 90/133 (67.67%), Query Frame = 0


Query: 78  SSCITRPLAEILRDLNKRIPDNIAQKVPHSDTALDRPPATFIPWFHANRMLSFYAPGWCG 137
           +S I+RPLAEIL++LNK++PD++ +       ++      +IPW   NR+++ +AP W G
Sbjct: 47  TSGISRPLAEILKELNKKVPDSVIRTRVEDGCSI-----KYIPWHIVNRIMNMHAPEWSG 106

Query: 138 EIRDVIFS-DNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKAC 197
           E+R V +S D  +VTV YRVT+ G+D E  RESTGT S  D    D V  AE +AF +AC
Sbjct: 107 EVRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAEAMAFRRAC 166

Query: 198 ARFGLGLYLYHEE 210
           ARFGLGL+LYHE+
Sbjct: 167 ARFGLGLHLYHED 174

[Close]

BLAST of Spg007160 vs. ExPASy TrEMBL
Match: A0A6J1FJJ9 (DNA repair RAD52-like protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111446320 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 2.4e-105
Identity = 196/209 (93.78%), Postives = 200/209 (95.69%), Query Frame = 0


Query: 1   MALQTYAHSWLLGPRLPAFSSLPSSYSVNEIQLPQISTTPRRHLHLVCSSSDASGSKKGV 60
           MALQTYAHS LLGPRLPAFS LPSSYSV+EI+LPQIST  RRHLHLVCSSSDASG KKGV
Sbjct: 1   MALQTYAHSQLLGPRLPAFSFLPSSYSVSEIRLPQISTATRRHLHLVCSSSDASG-KKGV 60

Query: 61  PNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKVPHSDTALDRPPATFIP 120
           PN+NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA KVPHSD   +RPPATFIP
Sbjct: 61  PNTNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAPKVPHSDPQ-NRPPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 207

[Close]

BLAST of Spg007160 vs. ExPASy TrEMBL
Match: A0A6J1J3T8 (DNA repair RAD52-like protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481079 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 3.9e-103
Identity = 192/209 (91.87%), Postives = 198/209 (94.74%), Query Frame = 0


Query: 1   MALQTYAHSWLLGPRLPAFSSLPSSYSVNEIQLPQISTTPRRHLHLVCSSSDASGSKKGV 60
           MALQTYAH  LLGPRLPAFS LPSSYSV+EI+LPQIST  RRHLHLVCSSS+ASG KKGV
Sbjct: 1   MALQTYAHFQLLGPRLPAFSFLPSSYSVSEIRLPQISTATRRHLHLVCSSSEASG-KKGV 60

Query: 61  PNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKVPHSDTALDRPPATFIP 120
           PN+NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA KVP SD   +RPPATFIP
Sbjct: 61  PNTNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAPKVPQSDPQ-NRPPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSN+
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNV 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 207

[Close]

BLAST of Spg007160 vs. ExPASy TrEMBL
Match: A0A0A0L5X0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G663650 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.0e-99
Identity = 188/210 (89.52%), Postives = 193/210 (91.90%), Query Frame = 0


Query: 1   MALQTYAHSWLLGPRLPAFSSLPSSYSVNEIQLPQISTTP-RRHLHLVCSSSDASGSKKG 60
           MALQTYAHS L GP L A SS+ SSYS +EI+LP  STT  RRHL LVCSSSDA+ +KKG
Sbjct: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKVPHSDTALDRPPATFI 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQK PHSDT  DR PATFI
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTN-DRSPATFI 120

Query: 121 PWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSN 180
           PWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSN
Sbjct: 121 PWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSN 180

Query: 181 IEDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           IEDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 IEDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of Spg007160 vs. ExPASy TrEMBL
Match: A0A1S4DZ99 (uncharacterized protein LOC103493818 OS=Cucumis melo OX=3656 GN=LOC103493818 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 3.4e-99
Identity = 188/210 (89.52%), Postives = 192/210 (91.43%), Query Frame = 0


Query: 1   MALQTYAHSWLLGPRLPAFSSLPSSYSVNEIQLPQISTTPRR-HLHLVCSSSDASGSKKG 60
           MALQTYAHS LLGP   A SS+ SSYS +EI+LP  STT RR HL LVCSSSDA+ SKKG
Sbjct: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLSSTTSRRPHLRLVCSSSDANSSKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKVPHSDTALDRPPATFI 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQK PHSDT  DR P TFI
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTH-DRSPTTFI 120

Query: 121 PWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSN 180
           PWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSN
Sbjct: 121 PWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSN 180

Query: 181 IEDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           IEDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 IEDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of Spg007160 vs. ExPASy TrEMBL
Match: A0A5A7VFI5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00600 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 3.4e-99
Identity = 188/210 (89.52%), Postives = 192/210 (91.43%), Query Frame = 0


Query: 1   MALQTYAHSWLLGPRLPAFSSLPSSYSVNEIQLPQISTTPRR-HLHLVCSSSDASGSKKG 60
           MALQTYAHS LLGP   A SS+ SSYS +EI+LP  STT RR HL LVCSSSDA+ SKKG
Sbjct: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLSSTTSRRPHLRLVCSSSDANSSKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKVPHSDTALDRPPATFI 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQK PHSDT  DR P TFI
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTH-DRSPTTFI 120

Query: 121 PWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSN 180
           PWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSN
Sbjct: 121 PWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSN 180

Query: 181 IEDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           IEDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 IEDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of Spg007160 vs. TAIR 10
Match: AT5G47870.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT1G71310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 236.1 bits (601), Expect = 2.5e-62
Identity = 113/155 (72.90%), Postives = 131/155 (84.52%), Query Frame = 0


Query: 54  SGSKKGVPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKVPHSDTALDR 113
           +G KK VPNSNYVVP++K    ++SS ITRPL EILRDLNK+IPDNI +   H   +   
Sbjct: 50  AGKKKAVPNSNYVVPIDKF---SSSSSITRPLIEILRDLNKKIPDNIVKS--HDPPSTSA 109

Query: 114 PPATFIPWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTV 173
             + FIPW+HANRMLSFYAPGWCGE+RDVIFS+NG+VTVVYR+T+RGSDGEAHRESTGTV
Sbjct: 110 ATSGFIPWYHANRMLSFYAPGWCGEVRDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTV 169

Query: 174 SATDSNIEDPVAAAEEIAFCKACARFGLGLYLYHE 209
           + TD +IEDPV AAEEIAFC+ACARFGLGLYLYHE
Sbjct: 170 TTTDDHIEDPVTAAEEIAFCRACARFGLGLYLYHE 199

[Close]

BLAST of Spg007160 vs. TAIR 10
Match: AT1G71310.2 (cobalt ion binding )

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-30
Identity = 65/133 (48.87%), Postives = 90/133 (67.67%), Query Frame = 0


Query: 78  SSCITRPLAEILRDLNKRIPDNIAQKVPHSDTALDRPPATFIPWFHANRMLSFYAPGWCG 137
           +S I+RPLAEIL++LNK++PD++ +       ++      +IPW   NR+++ +AP W G
Sbjct: 47  TSGISRPLAEILKELNKKVPDSVIRTRVEDGCSI-----KYIPWHIVNRIMNMHAPEWSG 106

Query: 138 EIRDVIFS-DNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKAC 197
           E+R V +S D  +VTV YRVT+ G+D E  RESTGT S  D    D V  AE +AF +AC
Sbjct: 107 EVRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAEAMAFRRAC 166

Query: 198 ARFGLGLYLYHEE 210
           ARFGLGL+LYHE+
Sbjct: 167 ARFGLGLHLYHED 174

[Close]

BLAST of Spg007160 vs. TAIR 10
Match: AT1G71310.1 (cobalt ion binding )

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-30
Identity = 65/133 (48.87%), Postives = 90/133 (67.67%), Query Frame = 0


Query: 78  SSCITRPLAEILRDLNKRIPDNIAQKVPHSDTALDRPPATFIPWFHANRMLSFYAPGWCG 137
           +S I+RPLAEIL++LNK++PD++ +       ++      +IPW   NR+++ +AP W G
Sbjct: 47  TSGISRPLAEILKELNKKVPDSVIRTRVEDGCSI-----KYIPWHIVNRIMNMHAPEWSG 106

Query: 138 EIRDVIFS-DNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKAC 197
           E+R V +S D  +VTV YRVT+ G+D E  RESTGT S  D    D V  AE +AF +AC
Sbjct: 107 EVRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAEAMAFRRAC 166

Query: 198 ARFGLGLYLYHEE 210
           ARFGLGL+LYHE+
Sbjct: 167 ARFGLGLHLYHED 174

[Close]

BLAST of Spg007160 vs. TAIR 10
Match: AT1G71310.3 (cobalt ion binding )

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-15
Identity = 38/88 (43.18%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 78  SSCITRPLAEILRDLNKRIPDNIAQKVPHSDTALDRPPATFIPWFHANRMLSFYAPGWCG 137
           +S I+RPLAEIL++LNK++PD++ +       ++      +IPW   NR+++ +AP W G
Sbjct: 47  TSGISRPLAEILKELNKKVPDSVIRTRVEDGCSI-----KYIPWHIVNRIMNMHAPEWSG 106

Query: 138 EIRDVIFS-DNGSVTVVYRVTVRGSDGE 165
           E+R V +S D  +VTV YRVT+ G+D E
Sbjct: 107 EVRSVTYSPDGNTVTVAYRVTLYGTDAE 129

The following BLAST results are available for this feature:

BLAST of Spg007160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940851.1	5.1e-105	93.78	DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >XP_02294085...	[more]
XP_023522333.1	4.3e-104	93.30	DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_...	[more]
XP_022982164.1	8.1e-103	91.87	DNA repair RAD52-like protein 2, chloroplastic [Cucurbita maxima] >XP_022982165....	[more]
XP_004145544.1	4.1e-99	89.52	DNA repair RAD52-like protein 2, chloroplastic [Cucumis sativus] >XP_031740574.1...	[more]
XP_008452970.1	7.1e-99	89.52	PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo] >XP_016901316.1 P...	[more]

BLAST of Spg007160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIJ4	3.6e-61	72.90	DNA repair RAD52-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9FVV7	1.6e-29	48.87	DNA repair RAD52-like protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Spg007160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJJ9	2.4e-105	93.78	DNA repair RAD52-like protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J3T8	3.9e-103	91.87	DNA repair RAD52-like protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0L5X0	2.0e-99	89.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G663650 PE=4 SV=1	[more]
A0A1S4DZ99	3.4e-99	89.52	uncharacterized protein LOC103493818 OS=Cucumis melo OX=3656 GN=LOC103493818 PE=...	[more]
A0A5A7VFI5	3.4e-99	89.52	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg007160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47870.1	2.5e-62	72.90	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G71310.2	1.1e-30	48.87	cobalt ion binding	[more]
AT1G71310.1	1.1e-30	48.87	cobalt ion binding	[more]
AT1G71310.3	1.8e-15	43.18	cobalt ion binding	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34050:SF3	DNA REPAIR RAD52-LIKE PROTEIN 2, CHLOROPLASTIC	coord: 50..209
IPR037489	DNA repair RAD52-like protein	PANTHER	PTHR34050	FAMILY NOT NAMED	coord: 50..209

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg007160.1	Spg007160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
molecular_function	GO:0003677	DNA binding