Spg006940 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006940
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	transcription factor BEE 3-like
Location	scaffold10: 39123539 .. 39125289 (+)
RNA-Seq Expression	Spg006940
Synteny	Spg006940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTTCCTTTCCATGAAACTTTCAGTTGCTAGTCGCTACTATGACTTCAACAACAGCTCCGAGACTGATGGCATTGAGATCATGCAGGTATGGACATTCTCAACATAAATTTTCGTGCTAGAAATTAATTAATCTCATCAATTTTCAATTTGCAAATATTACCATAAAGCTTGATATGGTATTCTGAAAAACAATATATATATATATATCGACGCCCAATGATAATCGTTCAATGCATATTAAAAAAAAAAACAAATTTAAATGTGTTGATGAATTTTAAGAAGAATTTTTTAAAGAAAATATAATTTATAGAAAGTTTAGTCCTATAACTTGTAAAGTTGTGTCAATTTGATCTCTGAGATTAAAAAGTATCTAATACGTAATATCTGAACTTTCAATTTTGTGTCTAATAAGTCTCTAGCATATTTGAGATTTGTAAAAATTAGAGAATTTGCAGTAACTGGCAAAATAAGAATTATATAATTGCAAATATAGCACAATGTAAAAAATATTGCAAATATACAAAATCCATCATAGTATATTACTGATAGACACTGATAGACTTTGGTTAATTAGAATATATCTGATAGACATCGATTATTAGAGTTTATCAGTGATAGACTCTAATTAATCAGAATCTATCAGTCTACTGATAGACTCCGATTATTCAGAATCTATCAGTATCTATCGCTGATAGACTCCAGTTAATTGAAATCTATCAGTGATAGTCATCAATAGATTTTGATTAATCGGGGTCTATCAACGATAGACACTGATAGACTTTGAATAATCAGAGTCTATCAGTGATGGACACGGATAGAATCTGACGATAGCTTTTTGGTCTTGTACAATTAATTTTGCTATATATGCAATTAGTTTGCAATTGTGCTATATTTGCTATTAATTTGGTCCAATTTGTCACCTATGCAACTGTCCCTAAAAATTAACTAATCTATTAAATATAAAATTGAACTTTATGTGCCTATTGGGACTCTAAACTTCCAATTTTGTATATAGTAGATTTGTAAATTTTAAAAAACGTCAAATAGGTTAAAGATTTATTAGACAAAAAATTGAAAGTTTAGAGACTTATTGGACACAAAAGTGAAAGTTCAAATTGACATAATCCTGAAAGTTCAGGAACTAAACTTGCAATTGCATCTAGTTGGTTAACATTAATGCAATCTTTTTTTTTTCTCAATTGATTAATGTAATTCTTATTTATTTATTATTTCTCCTTAATAACAACAAAGGTTGATATAGAATTTGTACTAGGAGTACAAGCCAATACTTTTAACATGTAATTATTTGTATATGCTATGATTTCAGCTATATGTATAATTATTTTTAAATACTATATCTATAGTATTTGATCTAAATTAAGTTAGATTTATTTCTACCCCTTTTTTGGAGGAGCATTGACAAGAAAGTTTTATGCTTCACACATTATTTCTTTCTTCTTATTCATCTCATCATCTTTTAGAAAATTTGTAAATTATTGAAATTCTGAGTTAGAAAAAGCTTATAGTTGATAAAATTTTGCAGGCAACAAATGAGTATAATGATATACAAGAAATGGAGAGGATTGTACTTGGAGAAGAAGGGTATGGAGGGCCCTGTTACCACCACTCTACTTTGCCACCTCTCTAACTTCAATACAATCTCCACTCTCCCTTTCTTCTTTCCAAACATAACTATTTATTGAACTTATAAATTATAATGCTTTAATTTCTTTCCATGCAAAGAATACT

mRNA sequence

AAGTTCCTTTCCATGAAACTTTCAGTTGCTAGTCGCTACTATGACTTCAACAACAGCTCCGAGACTGATGGCATTGAGATCATGCAGGCAACAAATGAGTATAATGATATACAAGAAATGGAGAGGATTGTACTTGGAGAAGAAGGGTATGGAGGGCCCTGTTACCACCACTCTACTTTGCCACCTCTCTAA

Coding sequence (CDS)

AAGTTCCTTTCCATGAAACTTTCAGTTGCTAGTCGCTACTATGACTTCAACAACAGCTCCGAGACTGATGGCATTGAGATCATGCAGGCAACAAATGAGTATAATGATATACAAGAAATGGAGAGGATTGTACTTGGAGAAGAAGGGTATGGAGGGCCCTGTTACCACCACTCTACTTTGCCACCTCTCTAA

Protein sequence

KFLSMKLSVASRYYDFNNSSETDGIEIMQATNEYNDIQEMERIVLGEEGYGGPCYHHSTLPPL

Homology

[Close]

BLAST of Spg006940 vs. NCBI nr
Match: XP_022139667.1 (transcription factor BEE 3-like [Momordica charantia])

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-19
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1   KFLSMKLSVASRYYDFNNSSETDGIEIMQATNEYNDIQEMERIVLGEEGYGGPCYHHSTL 60
           +FLSMKLS ASRYYDFNN++ETDGIEIMQATN Y+D+QEMERIVLGEEGYGG  Y H TL
Sbjct: 155 EFLSMKLSTASRYYDFNNTTETDGIEIMQATNGYDDMQEMERIVLGEEGYGGCSYLHPTL 214

Query: 61  PPL 64
            PL
Sbjct: 215 SPL 217

[Close]

BLAST of Spg006940 vs. NCBI nr
Match: XP_038886374.1 (transcription factor BEE 3-like isoform X1 [Benincasa hispida])

HSP 1 Score: 95.5 bits (236), Expect = 1.7e-16
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1   KFLSMKLSVASRYYDFNNSSETDGIEIMQATNEYNDIQEMERIVLGEEGYGGPCYHHSTL 60
           +FLSMKLSVASRYYDFNNS ETDGIEI+QAT   + +Q +ERIVL +EGYGGP  HHSTL
Sbjct: 152 EFLSMKLSVASRYYDFNNSPETDGIEILQATKGCDHMQHVERIVL-KEGYGGPFNHHSTL 211

Query: 61  PPL 64
           PPL
Sbjct: 212 PPL 213

[Close]

BLAST of Spg006940 vs. NCBI nr
Match: XP_022994041.1 (transcription factor BEE 3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 47/65 (72.31%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1   KFLSMKLSVASRYYDFNNSSETDGIEIMQATNEYNDIQEM--ERIVLGEEGYGGPCYHHS 60
           +FLSMKLSVASRYYDFNNSSETD IEIMQATN  + ++EM    +V  EEG GG  YHHS
Sbjct: 190 EFLSMKLSVASRYYDFNNSSETDEIEIMQATNGCDYMEEMGGRVVVREEEGNGGSFYHHS 249

Query: 61  TLPPL 64
           TLPPL
Sbjct: 250 TLPPL 254

[Close]

BLAST of Spg006940 vs. NCBI nr
Match: XP_023551454.1 (transcription factor BEE 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 88.6 bits (218), Expect = 2.1e-14
Identity = 47/65 (72.31%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 1   KFLSMKLSVASRYYDFNNSSETDGIEIMQATNEYNDIQEM--ERIVLGEEGYGGPCYHHS 60
           +FLSMKLSVASRYYDFNNSSETD IEIMQATN    ++EM    +V  EEG GG  YHHS
Sbjct: 190 EFLSMKLSVASRYYDFNNSSETDEIEIMQATNGCGYMEEMGGRVVVREEEGNGGSFYHHS 249

Query: 61  TLPPL 64
           TLPPL
Sbjct: 250 TLPPL 254

[Close]

BLAST of Spg006940 vs. NCBI nr
Match: XP_022939188.1 (transcription factor BEE 3-like [Cucurbita moschata])

HSP 1 Score: 88.6 bits (218), Expect = 2.1e-14
Identity = 47/65 (72.31%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 1   KFLSMKLSVASRYYDFNNSSETDGIEIMQATNEYNDIQEM--ERIVLGEEGYGGPCYHHS 60
           +FLSMKLSVASRYYDFNNSSETD IEIMQATN    ++EM    +V  EEG GG  YHHS
Sbjct: 190 EFLSMKLSVASRYYDFNNSSETDEIEIMQATNGCGYMEEMGGRVVVREEEGNGGSFYHHS 249

Query: 61  TLPPL 64
           TLPPL
Sbjct: 250 TLPPL 254

[Close]

BLAST of Spg006940 vs. ExPASy TrEMBL
Match: A0A6J1CEL5 (transcription factor BEE 3-like OS=Momordica charantia OX=3673 GN=LOC111010516 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.2e-20
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1   KFLSMKLSVASRYYDFNNSSETDGIEIMQATNEYNDIQEMERIVLGEEGYGGPCYHHSTL 60
           +FLSMKLS ASRYYDFNN++ETDGIEIMQATN Y+D+QEMERIVLGEEGYGG  Y H TL
Sbjct: 155 EFLSMKLSTASRYYDFNNTTETDGIEIMQATNGYDDMQEMERIVLGEEGYGGCSYLHPTL 214

Query: 61  PPL 64
            PL
Sbjct: 215 SPL 217

[Close]

BLAST of Spg006940 vs. ExPASy TrEMBL
Match: A0A6J1JY10 (transcription factor BEE 3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489851 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.8e-15
Identity = 47/65 (72.31%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1   KFLSMKLSVASRYYDFNNSSETDGIEIMQATNEYNDIQEM--ERIVLGEEGYGGPCYHHS 60
           +FLSMKLSVASRYYDFNNSSETD IEIMQATN  + ++EM    +V  EEG GG  YHHS
Sbjct: 190 EFLSMKLSVASRYYDFNNSSETDEIEIMQATNGCDYMEEMGGRVVVREEEGNGGSFYHHS 249

Query: 61  TLPPL 64
           TLPPL
Sbjct: 250 TLPPL 254

[Close]

BLAST of Spg006940 vs. ExPASy TrEMBL
Match: A0A6J1FKZ5 (transcription factor BEE 3-like OS=Cucurbita moschata OX=3662 GN=LOC111445183 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.0e-14
Identity = 47/65 (72.31%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 1   KFLSMKLSVASRYYDFNNSSETDGIEIMQATNEYNDIQEM--ERIVLGEEGYGGPCYHHS 60
           +FLSMKLSVASRYYDFNNSSETD IEIMQATN    ++EM    +V  EEG GG  YHHS
Sbjct: 190 EFLSMKLSVASRYYDFNNSSETDEIEIMQATNGCGYMEEMGGRVVVREEEGNGGSFYHHS 249

Query: 61  TLPPL 64
           TLPPL
Sbjct: 250 TLPPL 254

[Close]

BLAST of Spg006940 vs. ExPASy TrEMBL
Match: A0A438ELB2 (Transcription factor bHLH75 OS=Vitis vinifera OX=29760 GN=BHLH75_0 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.4e-08
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 1   KFLSMKLSVASRYYDFNNSSETDGIEIMQATNEYNDIQEMERIVLGEEGYGGPCYHHSTL 60
           +FLSMKLS AS +YDF NSSE + +E MQ TN Y ++ E+ER V  +EGYGGP + HST 
Sbjct: 201 EFLSMKLSAASTFYDF-NSSEAEALETMQGTNAY-EVHEVERSV--KEGYGGPSHLHSTW 257

Query: 61  P 62
           P
Sbjct: 261 P 257

[Close]

BLAST of Spg006940 vs. ExPASy TrEMBL
Match: A5B5L7 (BHLH domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_010828 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.4e-08
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 1   KFLSMKLSVASRYYDFNNSSETDGIEIMQATNEYNDIQEMERIVLGEEGYGGPCYHHSTL 60
           +FLSMKLS AS +YDF NSSE + +E MQ TN Y ++ E+ER V  +EGYGGP + HST 
Sbjct: 180 EFLSMKLSAASTFYDF-NSSEAEALETMQGTNAY-EVHEVERSV--KEGYGGPSHLHSTW 236

Query: 61  P 62
           P
Sbjct: 240 P 236

[Close]

BLAST of Spg006940 vs. TAIR 10
Match: AT1G73830.2 (BR enhanced expression 3 )

HSP 1 Score: 44.7 bits (104), Expect = 3.3e-05
Identity = 26/59 (44.07%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 1   KFLSMKLSVASRYYDFNNSSETDGIEIMQATNEYNDIQEMERIVLGEEGYGGPCYHHST 60
           +FLSMKL+ AS YYDFN  SETD +E MQA       +  E + +G+   G   +H S+
Sbjct: 208 EFLSMKLTAASSYYDFN--SETDAVESMQA-------KAREAVEMGQGRDGSSVFHSSS 257

[Close]

BLAST of Spg006940 vs. TAIR 10
Match: AT1G73830.1 (BR enhanced expression 3 )

HSP 1 Score: 43.1 bits (100), Expect = 9.5e-05
Identity = 25/59 (42.37%), Postives = 34/59 (57.63%), Query Frame = 0


Query: 1   KFLSMKLSVASRYYDFNNSSETDGIEIMQATNEYNDIQEMERIVLGEEGYGGPCYHHST 60
           +FLSMKL+ AS YYDFN  SETD +E MQ        +  E + +G+   G   +H S+
Sbjct: 208 EFLSMKLTAASSYYDFN--SETDAVESMQKA------KAREAVEMGQGRDGSSVFHSSS 258

[Close]

BLAST of Spg006940 vs. TAIR 10
Match: AT1G18400.1 (BR enhanced expression 1 )

HSP 1 Score: 40.4 bits (93), Expect = 6.2e-04
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 0


Query: 1   KFLSMKLSVASRYYDFNNSSETDGIEIMQATNEYNDIQEMERIVLGEEGYGGPCYHHST 60
           +FLSMKL+ AS +YDFN  SETD ++ MQ       + EM R    +   G P +H ST
Sbjct: 206 EFLSMKLTAASSFYDFN--SETDAVDSMQRAKARETV-EMGR----QTRDGSPVFHLST 257

The following BLAST results are available for this feature:

BLAST of Spg006940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139667.1	1.3e-19	80.95	transcription factor BEE 3-like [Momordica charantia]	[more]
XP_038886374.1	1.7e-16	76.19	transcription factor BEE 3-like isoform X1 [Benincasa hispida]	[more]
XP_022994041.1	1.6e-14	72.31	transcription factor BEE 3-like isoform X1 [Cucurbita maxima]	[more]
XP_023551454.1	2.1e-14	72.31	transcription factor BEE 1-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022939188.1	2.1e-14	72.31	transcription factor BEE 3-like [Cucurbita moschata]	[more]

BLAST of Spg006940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg006940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CEL5	6.2e-20	80.95	transcription factor BEE 3-like OS=Momordica charantia OX=3673 GN=LOC111010516 P...	[more]
A0A6J1JY10	7.8e-15	72.31	transcription factor BEE 3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1FKZ5	1.0e-14	72.31	transcription factor BEE 3-like OS=Cucurbita moschata OX=3662 GN=LOC111445183 PE...	[more]
A0A438ELB2	5.4e-08	59.02	Transcription factor bHLH75 OS=Vitis vinifera OX=29760 GN=BHLH75_0 PE=4 SV=1	[more]
A5B5L7	5.4e-08	59.02	BHLH domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_010828 PE=4 ...	[more]

BLAST of Spg006940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73830.2	3.3e-05	44.07	BR enhanced expression 3	[more]
AT1G73830.1	9.5e-05	42.37	BR enhanced expression 3	[more]
AT1G18400.1	6.2e-04	44.07	BR enhanced expression 1	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006940.1	Spg006940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity