Spg006844 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006844
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Glycosyltransferase
Location	scaffold10: 40039854 .. 40040963 (-)
RNA-Seq Expression	Spg006844
Synteny	Spg006844

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAATTAATTGATTTGAGATTGGGAGCTCAAATTTGGGCAAAGCATAGATTTGGTAAGTGGCAGACGATGTGCGTTACGAATTGGTAACAGTCGGTCGTCCCCCTTTTGATTCACTGAAAGAGAAGCAAATTGAGGAAGATAATTAAAGAGGTCGATTTGTTTATGGTAATGAATTTGCTAAAGTTTCAGTGCAGATTCTTCTTCCATTAATGGTGGTTGTTTCGGTGGCTCCCACACGCATCACAATTCTCTTCATTGCCAACTCTCTCTCACTCTTGCAGTCCACTCTCTCTCTCTCTCTCTCTCTAGAACGCGTATGAACTGTTGATGTTGATGCTGCTGTAGTAGCTCTCGTTCGAATATGGTGGGATCTTCAGCCCTAGACGCTGCTGTGTCGGTTCGTTTTCCGAAGGAGATGCGCTGTTGTATTGTCTATGATCGGCGCTTCTGATTCCTTACGTTTCCGCCATGTTTAGCTACTCCGCCCTCCCCTTCCGCCGTACCGTACAGATTCTTCTCCTCTTTACTGCCATTTCTCTCTCGTGCCTTGTTGTTTTAAGAGAAGTTGACTCCCTTCGCTACTTCCCTCTCTTCTCCTTCACTACTTTCTCTGGTTCTCATCCTGTTTCGCCTTTCTTCTCCTCCCTCGATGACGACGACGACCCTTTTGCGGTGAGTCAATTCGGTTTCCTTATCTACCTTTCGTTCTTGTTTTTCCATTTTGGTTGATTAATTGATTGGTCTTTGTGTGTTTCTGTTCTGTTGGGTTGTGTTGATTAATTTAGTTTCCTTATTCATGCTACTTGCTTCTCGTTCGTTTCGAATTGTGAGTTTGAATTTCATTGATGATGAAAGTGGACTTCAATGAATAGGGCCTTGATGATGAGAGGTGTAACAAACGCGAATAAGGAAATGATGATTCGTTATTGCTGATGTATTCTTCATGACGCCCAAAAATACAGAGCCATTATGACTTTCCTTTCTAGCTGAAACTTTGTGAACTTTTGACGTTTAAATAATCTTTTCTTTATTCTAGTTGCATGGCTGCCCTCAGTGTGCTCTTCTGTTCCGCATCTCTCTCTCTTTTTCAAACGTGTGTGCAGAGTAG

mRNA sequence

ATGTTTAGCTACTCCGCCCTCCCCTTCCGCCGTACCGTACAGATTCTTCTCCTCTTTACTGCCATTTCTCTCTCGTGCCTTGTTGTTTTAAGAGAAGTTGACTCCCTTCGCTACTTCCCTCTCTTCTCCTTCACTACTTTCTCTGGTTCTCATCCTGTTTCGCCTTTCTTCTCCTCCCTCGATGACGACGACGACCCTTTTGCGTTGCATGGCTGCCCTCAGTGTGCTCTTCTGTTCCGCATCTCTCTCTCTTTTTCAAACGTGTGTGCAGAGTAG

Coding sequence (CDS)

ATGTTTAGCTACTCCGCCCTCCCCTTCCGCCGTACCGTACAGATTCTTCTCCTCTTTACTGCCATTTCTCTCTCGTGCCTTGTTGTTTTAAGAGAAGTTGACTCCCTTCGCTACTTCCCTCTCTTCTCCTTCACTACTTTCTCTGGTTCTCATCCTGTTTCGCCTTTCTTCTCCTCCCTCGATGACGACGACGACCCTTTTGCGTTGCATGGCTGCCCTCAGTGTGCTCTTCTGTTCCGCATCTCTCTCTCTTTTTCAAACGTGTGTGCAGAGTAG

Protein sequence

MFSYSALPFRRTVQILLLFTAISLSCLVVLREVDSLRYFPLFSFTTFSGSHPVSPFFSSLDDDDDPFALHGCPQCALLFRISLSFSNVCAE

Homology

[Close]

BLAST of Spg006844 vs. NCBI nr
Match: XP_022939876.1 (uncharacterized protein At4g15970-like [Cucurbita moschata])

HSP 1 Score: 91.3 bits (225), Expect = 4.7e-15
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1  MFSY-SALPFRRTVQILLLFTAISLSCLVVLREVDSLRYFPLFSFTTFSGSHPVS-PFFS 60
          MFSY S++ FRRT+QILLLFTAISL+CLV+ RE+DS RYFPLFSF+TFS S P + PFF 
Sbjct: 14 MFSYHSSISFRRTLQILLLFTAISLACLVIFRELDSFRYFPLFSFSTFSASPPPAFPFFP 73

Query: 61 SLDDDDDPFA 69
          SL DDD+P A
Sbjct: 74 SLADDDEPSA 83

[Close]

BLAST of Spg006844 vs. NCBI nr
Match: XP_023551501.1 (uncharacterized protein At4g15970-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.0 bits (219), Expect = 2.3e-14
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 1  MFSY-SALPFRRTVQILLLFTAISLSCLVVLREVDSLRYFPLFSFTTFSGSHPVS-PFFS 60
          MFSY S++ FRRT+QILLLFTAISLSCLV+ RE+DS RYFPLFSF+TFS S P + PFF 
Sbjct: 14 MFSYHSSISFRRTLQILLLFTAISLSCLVIFRELDSFRYFPLFSFSTFSASPPPALPFFP 73

Query: 61 SLDDDDD 66
          SL DDD+
Sbjct: 74 SLADDDE 80

[Close]

BLAST of Spg006844 vs. NCBI nr
Match: KAG6579165.1 (hypothetical protein SDJN03_23613, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016681.1 hypothetical protein SDJN02_21791 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.0 bits (219), Expect = 2.3e-14
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 1  MFSY-SALPFRRTVQILLLFTAISLSCLVVLREVDSLRYFPLFSFTTFSGSHPVS-PFFS 60
          MFSY S++ FRRT+QILLLFTAISLSCLV+ RE+DS RYFPLFSF+TFS S P + PFF 
Sbjct: 14 MFSYHSSISFRRTLQILLLFTAISLSCLVIFRELDSFRYFPLFSFSTFSASPPPAFPFFP 73

Query: 61 SLDDDDD 66
          SL DDD+
Sbjct: 74 SLADDDE 80

[Close]

BLAST of Spg006844 vs. NCBI nr
Match: XP_022990900.1 (uncharacterized protein At4g15970-like [Cucurbita maxima])

HSP 1 Score: 88.2 bits (217), Expect = 4.0e-14
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 1  MFSY-SALPFRRTVQILLLFTAISLSCLVVLREVDSLRYFPLFSFTTFSGSHPVSPFFSS 60
          M SY S+ PFRRT+QI LLF AISLSC+VVLREVDSLR FPLFS TTFS S PVS F  S
Sbjct: 6  MLSYSSSFPFRRTLQIFLLFAAISLSCVVVLREVDSLRDFPLFSLTTFSDSSPVSLFLPS 65

Query: 61 LDDD-DDPFA 69
          LDDD ++PF+
Sbjct: 66 LDDDYNEPFS 75

[Close]

BLAST of Spg006844 vs. NCBI nr
Match: XP_022993496.1 (uncharacterized protein At4g15970-like [Cucurbita maxima])

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 48/67 (71.64%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 1  MFSY-SALPFRRTVQILLLFTAISLSCLVVLREVDSLRYFPLFSFTTFSGSHPVS-PFFS 60
          MFSY S++ FRRT+QILLLFTAISLSCLV+ RE+DS RYFPLFSF+TFS S P + P F 
Sbjct: 12 MFSYHSSISFRRTLQILLLFTAISLSCLVIFRELDSFRYFPLFSFSTFSASPPPAFPLFP 71

Query: 61 SLDDDDD 66
          SL DDD+
Sbjct: 72 SLADDDE 78

[Close]

BLAST of Spg006844 vs. ExPASy TrEMBL
Match: A0A6J1FH13 (Glycosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111445609 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.3e-15
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1  MFSY-SALPFRRTVQILLLFTAISLSCLVVLREVDSLRYFPLFSFTTFSGSHPVS-PFFS 60
          MFSY S++ FRRT+QILLLFTAISL+CLV+ RE+DS RYFPLFSF+TFS S P + PFF 
Sbjct: 14 MFSYHSSISFRRTLQILLLFTAISLACLVIFRELDSFRYFPLFSFSTFSASPPPAFPFFP 73

Query: 61 SLDDDDDPFA 69
          SL DDD+P A
Sbjct: 74 SLADDDEPSA 83

[Close]

BLAST of Spg006844 vs. ExPASy TrEMBL
Match: A0A6J1JRD3 (Glycosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111487650 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.9e-14
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 1  MFSY-SALPFRRTVQILLLFTAISLSCLVVLREVDSLRYFPLFSFTTFSGSHPVSPFFSS 60
          M SY S+ PFRRT+QI LLF AISLSC+VVLREVDSLR FPLFS TTFS S PVS F  S
Sbjct: 6  MLSYSSSFPFRRTLQIFLLFAAISLSCVVVLREVDSLRDFPLFSLTTFSDSSPVSLFLPS 65

Query: 61 LDDD-DDPFA 69
          LDDD ++PF+
Sbjct: 66 LDDDYNEPFS 75

[Close]

BLAST of Spg006844 vs. ExPASy TrEMBL
Match: A0A6J1JWH4 (Glycosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111489486 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.6e-14
Identity = 48/67 (71.64%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 1  MFSY-SALPFRRTVQILLLFTAISLSCLVVLREVDSLRYFPLFSFTTFSGSHPVS-PFFS 60
          MFSY S++ FRRT+QILLLFTAISLSCLV+ RE+DS RYFPLFSF+TFS S P + P F 
Sbjct: 12 MFSYHSSISFRRTLQILLLFTAISLSCLVIFRELDSFRYFPLFSFSTFSASPPPAFPLFP 71

Query: 61 SLDDDDD 66
          SL DDD+
Sbjct: 72 SLADDDE 78

[Close]

BLAST of Spg006844 vs. ExPASy TrEMBL
Match: A0A6J1ECI2 (Glycosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111431304 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.2e-13
Identity = 47/65 (72.31%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 5  SALPFRRTVQILLLFTAISLSCLVVLREVDSLRYFPLFSFTTFSGSHPVSPFFSSLDDD- 64
          S+  FRRT+QI LLF AISLSCLVVLRE+DSLR FPLFS TTFS S P S F  SLDDD 
Sbjct: 11 SSFSFRRTLQIFLLFAAISLSCLVVLRELDSLRDFPLFSLTTFSDSSPASLFLPSLDDDY 70

Query: 65 DDPFA 69
           +PFA
Sbjct: 71 SEPFA 75

[Close]

BLAST of Spg006844 vs. ExPASy TrEMBL
Match: A0A6J1EA97 (Glycosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111431304 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.2e-13
Identity = 47/65 (72.31%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 5  SALPFRRTVQILLLFTAISLSCLVVLREVDSLRYFPLFSFTTFSGSHPVSPFFSSLDDD- 64
          S+  FRRT+QI LLF AISLSCLVVLRE+DSLR FPLFS TTFS S P S F  SLDDD 
Sbjct: 11 SSFSFRRTLQIFLLFAAISLSCLVVLRELDSLRDFPLFSLTTFSDSSPASLFLPSLDDDY 70

Query: 65 DDPFA 69
           +PFA
Sbjct: 71 SEPFA 75

The following BLAST results are available for this feature:

BLAST of Spg006844 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939876.1	4.7e-15	71.43	uncharacterized protein At4g15970-like [Cucurbita moschata]	[more]
XP_023551501.1	2.3e-14	73.13	uncharacterized protein At4g15970-like [Cucurbita pepo subsp. pepo]	[more]
KAG6579165.1	2.3e-14	73.13	hypothetical protein SDJN03_23613, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022990900.1	4.0e-14	72.86	uncharacterized protein At4g15970-like [Cucurbita maxima]	[more]
XP_022993496.1	1.2e-13	71.64	uncharacterized protein At4g15970-like [Cucurbita maxima]	[more]

BLAST of Spg006844 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg006844 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FH13	2.3e-15	71.43	Glycosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111445609 PE=3 SV=1	[more]
A0A6J1JRD3	1.9e-14	72.86	Glycosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111487650 PE=3 SV=1	[more]
A0A6J1JWH4	5.6e-14	71.64	Glycosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111489486 PE=3 SV=1	[more]
A0A6J1ECI2	6.2e-13	72.31	Glycosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111431304 PE=3 SV=1	[more]
A0A6J1EA97	6.2e-13	72.31	Glycosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111431304 PE=3 SV=1	[more]

BLAST of Spg006844 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006844.1	Spg006844.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071555	cell wall organization
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016757	glycosyltransferase activity