Spg006794 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006794
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA-directed DNA polymerase
Location	scaffold1: 55292892 .. 55295914 (-)
RNA-Seq Expression	Spg006794
Synteny	Spg006794

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAGGTAACCGATGGCAGCTCAACCGTGATGATTGACGGAGGTGGCGGCGCGGTGACGATTGGAAGGTAGGGTTATTTTTAGGGTTAAGATTGGGTATTTTTAGGGTTATACGGAAGTGTATGGGTCAAAGAAAAACACGAGACCACCGACGTCGGAAGTAGAATGCACCAATCAAGAATGGCGGCTAGTGTTTCGATGGCGGCGGTGGCTAGGGTTTCAAAAAAGTATGGTGGCTAGGGTTTTTTGGGGTTTTAGAGACGGCTATCTTGATTTTGAGAGTTTAAAATTATTCTCATTCATATAATATGTGCAATATAGGTCCTCTTTTATAGGAGAAAGACCTATTACAAATATGGAAAGGAATAAAAGCCATAAAGACCAAATATTTTACAATAAAGATTTACACACAAATATTATAAATTCCAACATATTTATTGAAAGTGTCCTTAGAGAGAGGGGTGTATGGTTATCAAGAGAGGGAGGAGGCTTAGAGAGGGAGGATGTTTGTTGATATAATACCAAATGAAACCTACTTGAACTGTAAAATTTTGGGTTTTTGTTTTTAATACTCTTTTTCTTATCTTCAGTGTAGCTTCAATTTTTGGATTCAATTTATGGTACCTTCTTTGGAACTTCAACATTTATTGAACTTCTCTGCCCATTTCTAGGATGGTGTCTTTTGGGTTGGAGGATTTTGCTGAAAAATATGGAGGTCTGGAACCTTCTCAGTTTGTTGATGTGATTTCTTTAGTCGGTGACAAATCTGATAATATTCCAGGTGATTCATGAGTCTCTTTCTAAAAACCTCCATAAATTTGTTTTGCACCAATCACAACGTAATTGAGGCTTTGATAAGCTGGAATTTTCTTCCCTTGGTATGCTTGGTGTTCATTTCGTTTGGACTTGACTTAGCACTGGAGTACTTTTCTATGCTTCAGGTCTAATCCACACGACAAAAGTTACGCTAGGGTCAAAAAATCATTGTCACTGACGTGTAATTTCAGTACTAACATAAACAAGCTGAACTTGAAAATTTCATGGCAAGAAACCAAGGCCTTGACTTATAAGAAATCGGAATGGGAATGTTATTCTTTTAATGTTGTCTACTGGGAGATTTTTGGAATCAAAATCGAAATCTATTGGTGTTGTTTCCTAGAAACGGTCGAGAATCGGAATAGGAACCAGACATACTATAATTACTAGAGTCAACTTTCATACTTTTAACTAATTAAAATGCATTACTAAATAATATGCTAATATAATTATTAATTAAAATAATAGTAATCTATAATAATTTTAATTTATTTTATTACTTTTTTATTTGATAACAATATTTTTTATTTTAACAATTTATTTAATACTAGCAAATAATAAGTAACTAAATTATATCAACTAACTATTAATGAATTCACAAGTGAGGAGTAGCAAGAATACAAATACAATATTAAGAATATGATTGACAATTAAATTTACTGTAATCCATCAATTTAGCTAAGCTTATGACCATGTGCTAGTTCAGATAAAGCAAAGTTTTTTTTTTTTTTGACAATATATGGGGGTGGGGGATTTGAACCACTGGCTTCTCGGTCATTCGTACAACTTTATGCTAGTTGAACTATGCTCTTGTTAGCTCAGATAAGGCAAAGTTGCCCAAGTGAGGACTAAAATATAACAGTAGACTGTTACTAGTTCGTAATATCTTTTATTGACTAGATGGTAATTGATGTGCCCATAATTCTAAATGTAGGAGTCGATGGAATTGGAAATGTCAATGCCGTGCAACTTATCACTAGATTTGGTAAGTTGGTTTAAGAGACTATACCTTCCTCGGGGAATTGTGGACTACAATTTATTCAATCATATGTATGCTTACCTTCTTATATTGTGTACTTACAAGATATTTTATCGTTATTGAGAATAATGGTAAAGGTAGATACCTGTCTTCTGCAGCTGCCTATTCAATTCAAGGAAATAATAAATCCTATAATTCAGGAGATATCTTTTAATTTTTTATTTTTTTTTTATTTTTGCAAAGTCAGGAGATAAATTTACCATCCAAATACAAGTCCTAAACTATTGAGGTCAGTATAAATATTCAACACTTGCATATTTCAAAAAAGCGTGAACATATAAGATGAACAATAAAATATTTCAATTAGATTTCTCCTAGTCCTGGGCATCTTTTCGAAACTCTTGTTTCAAGTTGTAATCTTATGTCCTAGATTTCTTTACTTACTTTCTTTTTTTATTGGATAAAATTAAAAATATTCATGCGAAGAACTTTTGAAAGAATGGAAATGGATGAGAAATCCTGACTAAAAAAAAATATATATTTAAAACACTTTCAGCAAAGGCTTTGAATGAATTTTGTATTTTATTTGTTTGGGGCTGTGTTCTTTTTTTTTGGGGGGGGGGGGGGGGGTTGGAGAGTAAAAGACCTATTGTATTTTTTCATTTTATCCATGATATGTTTTCCTTGTCCCAAAAAGAAAACACTTTCTGCAAACGTAATCAGAGTGCAATAGCTAAACGTAATCTTAAAATCTGAAGTATTTTCATTCTTTGACCGTAAAAGGTAAACATTTGAACTGTATAATGCAATATAAAATGAGAATGCCAAGGTACTATAGTTTCATTTTCCTTGTTTATATTTCTAATTCTTATCCTTTTTTCTGTAGTCTGTGTTGCCTAAAATGTAATAGTTTACGTATACTTATATACAAATTCTCTCATTGGTCAGGCACGTTAGAAAATTTGTTGCAACATGTTGATCAAGTGGAAGATGAACGTATTAGGAAGGTACTTCTATCATTGTGCAATAGCCGGCTTCTGAACTATAAAATTTATGAAAACACTTGTATTATTTTCGGTGTATTAGATGGGGTAAGCTTATACAAGTAATGAATTTTTCTTAATTTTGAGAGTTTAAAAATTATTCTCATATCTAATATCTAATATGTGCAATATAGGTCCTCTTATATAGGAGAAAGACCTATTACATATATAGAAAGGAATAA

mRNA sequence

ATGTCTGAGGTAACCGATGGCAGCTCAACCGTGATGATTGACGGAGGTGGCGGCGCGGTGACGATTGGAAGGATGGTGTCTTTTGGGTTGGAGGATTTTGCTGAAAAATATGGAGGTCTGGAACCTTCTCAGTTTGTTGATGTGATTTCTTTAGTCGGTGACAAATCTGATAATATTCCAGGAGTCGATGGAATTGGAAATGTCAATGCCGTGCAACTTATCACTAGATTTGGCACGTTAGAAAATTTGTTGCAACATGTTGATCAAGTGGAAGATGAACGTATTAGGAAGGTCCTCTTATATAGGAGAAAGACCTATTACATATATAGAAAGGAATAA

Coding sequence (CDS)

ATGTCTGAGGTAACCGATGGCAGCTCAACCGTGATGATTGACGGAGGTGGCGGCGCGGTGACGATTGGAAGGATGGTGTCTTTTGGGTTGGAGGATTTTGCTGAAAAATATGGAGGTCTGGAACCTTCTCAGTTTGTTGATGTGATTTCTTTAGTCGGTGACAAATCTGATAATATTCCAGGAGTCGATGGAATTGGAAATGTCAATGCCGTGCAACTTATCACTAGATTTGGCACGTTAGAAAATTTGTTGCAACATGTTGATCAAGTGGAAGATGAACGTATTAGGAAGGTCCTCTTATATAGGAGAAAGACCTATTACATATATAGAAAGGAATAA

Protein sequence

MSEVTDGSSTVMIDGGGGAVTIGRMVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLLYRRKTYYIYRKE

Homology

[Close]

BLAST of Spg006794 vs. NCBI nr
Match: XP_022149360.1 (uncharacterized protein LOC111017796 isoform X5 [Momordica charantia])

HSP 1 Score: 147.5 bits (371), Expect = 6.8e-32
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 25  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 84
           MVSFGLEDFAEKYG LEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL
Sbjct: 251 MVSFGLEDFAEKYGALEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 310

Query: 85  QHVDQVEDERIRKVLL 101
           QHVDQVEDERIRK+L+
Sbjct: 311 QHVDQVEDERIRKMLV 326

[Close]

BLAST of Spg006794 vs. NCBI nr
Match: XP_022149355.1 (uncharacterized protein LOC111017796 isoform X1 [Momordica charantia])

HSP 1 Score: 147.5 bits (371), Expect = 6.8e-32
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 25  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 84
           MVSFGLEDFAEKYG LEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL
Sbjct: 300 MVSFGLEDFAEKYGALEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 359

Query: 85  QHVDQVEDERIRKVLL 101
           QHVDQVEDERIRK+L+
Sbjct: 360 QHVDQVEDERIRKMLV 375

[Close]

BLAST of Spg006794 vs. NCBI nr
Match: XP_022149357.1 (uncharacterized protein LOC111017796 isoform X3 [Momordica charantia])

HSP 1 Score: 147.5 bits (371), Expect = 6.8e-32
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 25  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 84
           MVSFGLEDFAEKYG LEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL
Sbjct: 282 MVSFGLEDFAEKYGALEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 341

Query: 85  QHVDQVEDERIRKVLL 101
           QHVDQVEDERIRK+L+
Sbjct: 342 QHVDQVEDERIRKMLV 357

[Close]

BLAST of Spg006794 vs. NCBI nr
Match: XP_023543412.1 (uncharacterized protein LOC111803303 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.2 bits (365), Expect = 3.4e-31
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 25  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 84
           MVSFGLEDFAEKYG LEPSQFVDV+SLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL
Sbjct: 282 MVSFGLEDFAEKYGVLEPSQFVDVMSLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 341

Query: 85  QHVDQVEDERIRKVLL 101
           QHVDQVEDERIRK+L+
Sbjct: 342 QHVDQVEDERIRKMLV 357

[Close]

BLAST of Spg006794 vs. NCBI nr
Match: XP_022933106.1 (uncharacterized protein LOC111439872 isoform X1 [Cucurbita moschata])

HSP 1 Score: 145.2 bits (365), Expect = 3.4e-31
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 25  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 84
           MVSFGLEDFAEKYG LEPSQFVDV+SLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL
Sbjct: 299 MVSFGLEDFAEKYGVLEPSQFVDVMSLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 358

Query: 85  QHVDQVEDERIRKVLL 101
           QHVDQVEDERIRK+L+
Sbjct: 359 QHVDQVEDERIRKMLV 374

[Close]

BLAST of Spg006794 vs. ExPASy Swiss-Prot
Match: Q04957 (DNA polymerase I OS=Bacillus caldotenax OX=1395 GN=polA PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-13
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 31  EDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQV 90
           E   EKY GL P Q VD+  L+GDKSDNIPGV GIG   AV+L+ +FGT+EN+L  +D++
Sbjct: 163 EAVREKY-GLTPEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLRQFGTVENVLASIDEI 222

Query: 91  EDERIRKVLLYRRKTYYIYRK 112
           + E++++ L   R+   + +K
Sbjct: 223 KGEKLKETLRQHREMALLSKK 242

[Close]

BLAST of Spg006794 vs. ExPASy Swiss-Prot
Match: P52026 (DNA polymerase I OS=Geobacillus stearothermophilus OX=1422 GN=polA PE=1 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 2.5e-13
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 27  SFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQH 86
           S+  E   EKY GL P Q VD+  L+GDKSDNIPGV GIG   AV+L+ +FGT+EN+L  
Sbjct: 159 SYTPETVVEKY-GLTPEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLAS 218

Query: 87  VDQVEDERIRKVL 100
           +D+++ E++++ L
Sbjct: 219 IDEIKGEKLKENL 230

[Close]

BLAST of Spg006794 vs. ExPASy Swiss-Prot
Match: P52028 (DNA polymerase I, thermostable OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=polA PE=3 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 8.1e-12
Identity = 34/63 (53.97%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 35  EKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDER 94
           EKY GL P Q+VD  +LVGD SDN+PGV GIG   A++L+  +G+LENLL+++D+V+ E 
Sbjct: 171 EKY-GLRPEQWVDFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPEN 230

Query: 95  IRK 98
           +R+
Sbjct: 231 VRE 232

[Close]

BLAST of Spg006794 vs. ExPASy Swiss-Prot
Match: P80194 (DNA polymerase I, thermostable OS=Thermus caldophilus OX=272 GN=polA PE=1 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-11
Identity = 33/63 (52.38%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 35  EKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDER 94
           +KY GL+P Q+VD  +LVGD SDN+PGV GIG   A++L+  +G+LENLL+++D+V+ E 
Sbjct: 171 QKY-GLKPEQWVDFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPEN 230

Query: 95  IRK 98
           +R+
Sbjct: 231 VRE 232

[Close]

BLAST of Spg006794 vs. ExPASy Swiss-Prot
Match: P30313 (DNA polymerase I, thermostable OS=Thermus thermophilus OX=274 GN=polA PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-11
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 35  EKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVE 92
           EKY GL P Q+VD  +L GD SDNIPGV GIG   A +LI  +G+LENL QH+DQV+
Sbjct: 169 EKY-GLRPEQWVDYRALAGDPSDNIPGVKGIGEKTAQRLIREWGSLENLFQHLDQVK 224

[Close]

BLAST of Spg006794 vs. ExPASy TrEMBL
Match: A0A6J1D5H7 (DNA-directed DNA polymerase OS=Momordica charantia OX=3673 GN=LOC111017796 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.3e-32
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 25  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 84
           MVSFGLEDFAEKYG LEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL
Sbjct: 251 MVSFGLEDFAEKYGALEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 310

Query: 85  QHVDQVEDERIRKVLL 101
           QHVDQVEDERIRK+L+
Sbjct: 311 QHVDQVEDERIRKMLV 326

[Close]

BLAST of Spg006794 vs. ExPASy TrEMBL
Match: A0A6J1D7Q6 (DNA-directed DNA polymerase OS=Momordica charantia OX=3673 GN=LOC111017796 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.3e-32
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 25  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 84
           MVSFGLEDFAEKYG LEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL
Sbjct: 282 MVSFGLEDFAEKYGALEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 341

Query: 85  QHVDQVEDERIRKVLL 101
           QHVDQVEDERIRK+L+
Sbjct: 342 QHVDQVEDERIRKMLV 357

[Close]

BLAST of Spg006794 vs. ExPASy TrEMBL
Match: A0A6J1D5H5 (DNA-directed DNA polymerase OS=Momordica charantia OX=3673 GN=LOC111017796 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.3e-32
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 25  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 84
           MVSFGLEDFAEKYG LEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL
Sbjct: 300 MVSFGLEDFAEKYGALEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 359

Query: 85  QHVDQVEDERIRKVLL 101
           QHVDQVEDERIRK+L+
Sbjct: 360 QHVDQVEDERIRKMLV 375

[Close]

BLAST of Spg006794 vs. ExPASy TrEMBL
Match: A0A6J1HVF9 (DNA-directed DNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111467206 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.6e-31
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 25  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 84
           MVSFGLEDFAEKYG LEPSQFVDV+SLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL
Sbjct: 299 MVSFGLEDFAEKYGVLEPSQFVDVMSLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 358

Query: 85  QHVDQVEDERIRKVLL 101
           QHVDQVEDERIRK+L+
Sbjct: 359 QHVDQVEDERIRKMLV 374

[Close]

BLAST of Spg006794 vs. ExPASy TrEMBL
Match: A0A6J1F3S3 (DNA-directed DNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111439872 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.6e-31
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 25  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 84
           MVSFGLEDFAEKYG LEPSQFVDV+SLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL
Sbjct: 281 MVSFGLEDFAEKYGVLEPSQFVDVMSLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 340

Query: 85  QHVDQVEDERIRKVLL 101
           QHVDQVEDERIRK+L+
Sbjct: 341 QHVDQVEDERIRKMLV 356

[Close]

BLAST of Spg006794 vs. TAIR 10
Match: AT3G52050.5 (5'-3' exonuclease family protein )

HSP 1 Score: 118.2 bits (295), Expect = 4.1e-27
Identity = 53/74 (71.62%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 25  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 84
           M SFG+EDFA+K+G LEP+QFVD+I+L GDKSDNIPGVDGIGNV+AV+LI+RFGTLENLL
Sbjct: 278 MASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTLENLL 337

Query: 85  QHVDQVEDERIRKV 99
           Q VD++++ +I++V
Sbjct: 338 QSVDEIKEGKIKEV 351

[Close]

BLAST of Spg006794 vs. TAIR 10
Match: AT3G52050.2 (5'-3' exonuclease family protein )

HSP 1 Score: 117.9 bits (294), Expect = 5.4e-27
Identity = 53/76 (69.74%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 25  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 84
           M SFG+EDFA+K+G LEP+QFVD+I+L GDKSDNIPGVDGIGNV+AV+LI+RFGTLENLL
Sbjct: 273 MASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTLENLL 332

Query: 85  QHVDQVEDERIRKVLL 101
           Q VD++++ +I++ L+
Sbjct: 333 QSVDEIKEGKIKESLI 348

[Close]

BLAST of Spg006794 vs. TAIR 10
Match: AT3G52050.1 (5'-3' exonuclease family protein )

HSP 1 Score: 117.9 bits (294), Expect = 5.4e-27
Identity = 53/76 (69.74%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 25  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 84
           M SFG+EDFA+K+G LEP+QFVD+I+L GDKSDNIPGVDGIGNV+AV+LI+RFGTLENLL
Sbjct: 273 MASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTLENLL 332

Query: 85  QHVDQVEDERIRKVLL 101
           Q VD++++ +I++ L+
Sbjct: 333 QSVDEIKEGKIKESLI 348

[Close]

BLAST of Spg006794 vs. TAIR 10
Match: AT3G52050.3 (5'-3' exonuclease family protein )

HSP 1 Score: 117.9 bits (294), Expect = 5.4e-27
Identity = 53/76 (69.74%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 25  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 84
           M SFG+EDFA+K+G LEP+QFVD+I+L GDKSDNIPGVDGIGNV+AV+LI+RFGTLENLL
Sbjct: 296 MASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTLENLL 355

Query: 85  QHVDQVEDERIRKVLL 101
           Q VD++++ +I++ L+
Sbjct: 356 QSVDEIKEGKIKESLI 371

[Close]

BLAST of Spg006794 vs. TAIR 10
Match: AT3G52050.4 (5'-3' exonuclease family protein )

HSP 1 Score: 117.9 bits (294), Expect = 5.4e-27
Identity = 53/76 (69.74%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 25  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLL 84
           M SFG+EDFA+K+G LEP+QFVD+I+L GDKSDNIPGVDGIGNV+AV+LI+RFGTLENLL
Sbjct: 261 MASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTLENLL 320

Query: 85  QHVDQVEDERIRKVLL 101
           Q VD++++ +I++ L+
Sbjct: 321 QSVDEIKEGKIKESLI 336

The following BLAST results are available for this feature:

BLAST of Spg006794 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149360.1	6.8e-32	96.05	uncharacterized protein LOC111017796 isoform X5 [Momordica charantia]	[more]
XP_022149355.1	6.8e-32	96.05	uncharacterized protein LOC111017796 isoform X1 [Momordica charantia]	[more]
XP_022149357.1	6.8e-32	96.05	uncharacterized protein LOC111017796 isoform X3 [Momordica charantia]	[more]
XP_023543412.1	3.4e-31	94.74	uncharacterized protein LOC111803303 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022933106.1	3.4e-31	94.74	uncharacterized protein LOC111439872 isoform X1 [Cucurbita moschata]	[more]

BLAST of Spg006794 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q04957	1.9e-13	46.91	DNA polymerase I OS=Bacillus caldotenax OX=1395 GN=polA PE=1 SV=1	[more]
P52026	2.5e-13	50.68	DNA polymerase I OS=Geobacillus stearothermophilus OX=1422 GN=polA PE=1 SV=2	[more]
P52028	8.1e-12	53.97	DNA polymerase I, thermostable OS=Thermus thermophilus (strain ATCC 27634 / DSM ...	[more]
P80194	1.4e-11	52.38	DNA polymerase I, thermostable OS=Thermus caldophilus OX=272 GN=polA PE=1 SV=2	[more]
P30313	2.4e-11	61.40	DNA polymerase I, thermostable OS=Thermus thermophilus OX=274 GN=polA PE=1 SV=1	[more]

BLAST of Spg006794 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D5H7	3.3e-32	96.05	DNA-directed DNA polymerase OS=Momordica charantia OX=3673 GN=LOC111017796 PE=4 ...	[more]
A0A6J1D7Q6	3.3e-32	96.05	DNA-directed DNA polymerase OS=Momordica charantia OX=3673 GN=LOC111017796 PE=4 ...	[more]
A0A6J1D5H5	3.3e-32	96.05	DNA-directed DNA polymerase OS=Momordica charantia OX=3673 GN=LOC111017796 PE=4 ...	[more]
A0A6J1HVF9	1.6e-31	94.74	DNA-directed DNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111467206 PE=4 SV=...	[more]
A0A6J1F3S3	1.6e-31	94.74	DNA-directed DNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111439872 PE=4 S...	[more]

BLAST of Spg006794 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52050.5	4.1e-27	71.62	5'-3' exonuclease family protein	[more]
AT3G52050.2	5.4e-27	69.74	5'-3' exonuclease family protein	[more]
AT3G52050.1	5.4e-27	69.74	5'-3' exonuclease family protein	[more]
AT3G52050.3	5.4e-27	69.74	5'-3' exonuclease family protein	[more]
AT3G52050.4	5.4e-27	69.74	5'-3' exonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008918	Helix-hairpin-helix motif, class 2	SMART	SM00279	HhH_4	coord: 42..77 e-value: 5.0E-11 score: 52.6
None	No IPR available	GENE3D	1.10.150.20		coord: 34..110 e-value: 2.8E-21 score: 77.4
None	No IPR available	PANTHER	PTHR10133:SF54	5'-3' EXONUCLEASE FAMILY PROTEIN	coord: 24..104
IPR020045	DNA polymerase I-like, H3TH domain	PFAM	PF01367	5_3_exonuc	coord: 41..110 e-value: 1.7E-20 score: 73.4
IPR020045	DNA polymerase I-like, H3TH domain	CDD	cd09898	H3TH_53EXO	coord: 42..111 e-value: 3.09673E-24 score: 85.9137
IPR002298	DNA polymerase A	PANTHER	PTHR10133	DNA POLYMERASE I	coord: 24..104
IPR036279	5'-3' exonuclease, C-terminal domain superfamily	SUPERFAMILY	47807	5' to 3' exonuclease, C-terminal subdomain	coord: 39..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006794.1	Spg006794.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0006261	DNA-dependent DNA replication
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003824	catalytic activity