Spg006745 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006745
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein starmaker-like isoform X1
Location	scaffold1: 54370112 .. 54371376 (+)
RNA-Seq Expression	Spg006745
Synteny	Spg006745

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAGTGTGCTCACTCCATCTTTGAAAGCACTGGTTTCTGATCAGCTTCATAGGCATTTGGACATCGATGTCAAAGTTGCAGTTGCATGCATTGGTGAAATAACTAGGATCACACTGCACCTGAAGCCCCTTACAGTGATGAGCAAATGAAGGTAATTAGAAATTTGGTCTTTGAGTGGATACAATGTCAATTTCCCACTTATCAGATTTCTTTCTAAAGAGTTATATATTTGCTTCTGTTCAGGAGGTATTTCATCTTATAGTATCATCCTTTGAAAATCTCTCTGACAAGTCAAGTCGATCATATGCAAATAGGGCATCCATTCTTATGAATAATTGAAGATGTTACTGAAGTAAGCCACTGACGTTCCTTTCCCCGTTCTTTCTTGATTTAGCTTATTACCAAGAACATCAACTCATTACATACATTTAGTCTTTACTTTGTTTTCTTTTGTGTTGTTGTGTGGAAAAAAGGCTAGCTAAGACTCTGTTATCTTACATTTAATCTTATTATCTTCAAATCCATGGTGCAGGTTGTTTAAGGGTGTTTCTGAAGATTCCTTTCAATGTTAGTATTTGAACATTGTGTTTAGTTTTGTGTTTACTTTTCAAAAATCTTTTCAGTTTGCTTTTTTCTCCCTTGTTCTTTTTTATGTTTAATTAGGTTTAAAATATGATTGGTTTTTGTTTTTGCTTTCTGACTCCTGACCTTAAGTGAGATCCCCTCACATCGGACAATATTGATGTGCTTTAGCCAAGAGCAACGTTTAAGTTTCCCATGGGTGAAGTTTCATTGGGAGAAAGTGAATAGGAGGAAGTGAACCAGATAATGAAATTTTAATTAGGGCAAAGTGAAAATTCGTAAATCTTTGTAAATCAATCTCTGTGGTATTGGCATTGGATGGTTCTTTTAAGTTATCATAGCTGGACTTTATCAACATTTATGGAAAATTACACTAGCATTGTCGTCATAAACAAGTCATGTGATATAATTATGTCCACAGTAAGCATTTTAAATTTTCAGGAGTTACATGTTGTAATGATTTCTAGGACAATGTGTACTTGTTGGAGTTTGGTTAGAAATGATTACAAGACTTGCCTTCAGGGGGGTGCTCCATTTGTTATATGCATATTGTATACTTATTGGAGTTTGGTTGACTTGAAGCTTCTCTAGGCTCAGTTTACAGCCATGATAGAAGCACTACGAAGACACGTGGATAAGTTTGCTTATCATAGTGGGTAGCAACAACTAGCAATTCCAC

mRNA sequence

ATGCAAAGTGTGCTCACTCCATCTTTGAAAGCACTGGTTTCTGATCAGCTTCATAGGCATTTGGACATCGATGTCAAAGTTGCAGTTGCATGCATTGGTGAAATAACTAGGATCACACTGCACCTGAAGCCCCTTACAGAGGTATTTCATCTTATAGTATCATCCTTTGAAAATCTCTCTGACAAGTCAAGTCGATCATATGCAAATAGGGCATCCATTCTTATGAATAATTGA

Coding sequence (CDS)

ATGCAAAGTGTGCTCACTCCATCTTTGAAAGCACTGGTTTCTGATCAGCTTCATAGGCATTTGGACATCGATGTCAAAGTTGCAGTTGCATGCATTGGTGAAATAACTAGGATCACACTGCACCTGAAGCCCCTTACAGAGGTATTTCATCTTATAGTATCATCCTTTGAAAATCTCTCTGACAAGTCAAGTCGATCATATGCAAATAGGGCATCCATTCTTATGAATAATTGA

Protein sequence

MQSVLTPSLKALVSDQLHRHLDIDVKVAVACIGEITRITLHLKPLTEVFHLIVSSFENLSDKSSRSYANRASILMNN

Homology

[Close]

BLAST of Spg006745 vs. NCBI nr
Match: XP_023545878.1 (E3 ubiquitin-protein ligase RBBP6-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.4 bits (259), Expect = 4.6e-19
Identity = 62/80 (77.50%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 1   MQSVLTPSLKALVSDQLHRHLDIDVKVAV-ACIGEITRITLHLKP-----LTEVFHLIVS 60
           MQS LTPSLKAL+SDQL RH DIDVKVAV ACI EITRIT    P     + EVFHLIVS
Sbjct: 51  MQSALTPSLKALISDQLLRHSDIDVKVAVAACISEITRITAPDAPYNDEQMKEVFHLIVS 110

Query: 61  SFENLSDKSSRSYANRASIL 75
           SFENLSDKSSRSYA RASIL
Sbjct: 111 SFENLSDKSSRSYAKRASIL 130

[Close]

BLAST of Spg006745 vs. NCBI nr
Match: XP_022961960.1 (protein starmaker-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 104.4 bits (259), Expect = 4.6e-19
Identity = 62/80 (77.50%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 1   MQSVLTPSLKALVSDQLHRHLDIDVKVAV-ACIGEITRITLHLKP-----LTEVFHLIVS 60
           MQS LTPSLKAL+SDQL RH DIDVKVAV ACI EITRIT    P     + EVFHLIVS
Sbjct: 51  MQSALTPSLKALISDQLLRHSDIDVKVAVAACISEITRITAPDAPYNDEQMKEVFHLIVS 110

Query: 61  SFENLSDKSSRSYANRASIL 75
           SFENLSDKSSRSYA RASIL
Sbjct: 111 SFENLSDKSSRSYAKRASIL 130

[Close]

BLAST of Spg006745 vs. NCBI nr
Match: XP_022996453.1 (protein starmaker-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 104.4 bits (259), Expect = 4.6e-19
Identity = 62/80 (77.50%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 1   MQSVLTPSLKALVSDQLHRHLDIDVKVAVA-CIGEITRITLHLKP-----LTEVFHLIVS 60
           MQS LTPSLKAL+SDQL RH DIDVKVAVA CI EITRIT    P     + EVFHLIVS
Sbjct: 51  MQSALTPSLKALISDQLLRHSDIDVKVAVATCISEITRITAPDAPYNDEQMKEVFHLIVS 110

Query: 61  SFENLSDKSSRSYANRASIL 75
           SFENLSDKSSRSYA RASIL
Sbjct: 111 SFENLSDKSSRSYAKRASIL 130

[Close]

BLAST of Spg006745 vs. NCBI nr
Match: KAG7029481.1 (Sister chromatid cohesion protein PDS5-like B-B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.4 bits (259), Expect = 4.6e-19
Identity = 62/80 (77.50%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 1   MQSVLTPSLKALVSDQLHRHLDIDVKVAV-ACIGEITRITLHLKP-----LTEVFHLIVS 60
           MQS LTPSLKAL+SDQL RH DIDVKVAV ACI EITRIT    P     + EVFHLIVS
Sbjct: 51  MQSALTPSLKALISDQLLRHSDIDVKVAVAACISEITRITAPDAPYNDEQMKEVFHLIVS 110

Query: 61  SFENLSDKSSRSYANRASIL 75
           SFENLSDKSSRSYA RASIL
Sbjct: 111 SFENLSDKSSRSYAKRASIL 130

[Close]

BLAST of Spg006745 vs. NCBI nr
Match: XP_022996452.1 (protein starmaker-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 104.4 bits (259), Expect = 4.6e-19
Identity = 62/80 (77.50%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 1   MQSVLTPSLKALVSDQLHRHLDIDVKVAVA-CIGEITRITLHLKP-----LTEVFHLIVS 60
           MQS LTPSLKAL+SDQL RH DIDVKVAVA CI EITRIT    P     + EVFHLIVS
Sbjct: 51  MQSALTPSLKALISDQLLRHSDIDVKVAVATCISEITRITAPDAPYNDEQMKEVFHLIVS 110

Query: 61  SFENLSDKSSRSYANRASIL 75
           SFENLSDKSSRSYA RASIL
Sbjct: 111 SFENLSDKSSRSYAKRASIL 130

[Close]

BLAST of Spg006745 vs. ExPASy TrEMBL
Match: A0A6J1KAT2 (protein starmaker-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491697 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.2e-19
Identity = 62/80 (77.50%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 1   MQSVLTPSLKALVSDQLHRHLDIDVKVAVA-CIGEITRITLHLKP-----LTEVFHLIVS 60
           MQS LTPSLKAL+SDQL RH DIDVKVAVA CI EITRIT    P     + EVFHLIVS
Sbjct: 51  MQSALTPSLKALISDQLLRHSDIDVKVAVATCISEITRITAPDAPYNDEQMKEVFHLIVS 110

Query: 61  SFENLSDKSSRSYANRASIL 75
           SFENLSDKSSRSYA RASIL
Sbjct: 111 SFENLSDKSSRSYAKRASIL 130

[Close]

BLAST of Spg006745 vs. ExPASy TrEMBL
Match: A0A6J1K1Y9 (protein starmaker-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491697 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.2e-19
Identity = 62/80 (77.50%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 1   MQSVLTPSLKALVSDQLHRHLDIDVKVAVA-CIGEITRITLHLKP-----LTEVFHLIVS 60
           MQS LTPSLKAL+SDQL RH DIDVKVAVA CI EITRIT    P     + EVFHLIVS
Sbjct: 51  MQSALTPSLKALISDQLLRHSDIDVKVAVATCISEITRITAPDAPYNDEQMKEVFHLIVS 110

Query: 61  SFENLSDKSSRSYANRASIL 75
           SFENLSDKSSRSYA RASIL
Sbjct: 111 SFENLSDKSSRSYAKRASIL 130

[Close]

BLAST of Spg006745 vs. ExPASy TrEMBL
Match: A0A6J1HDP8 (protein starmaker-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462578 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.2e-19
Identity = 62/80 (77.50%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 1   MQSVLTPSLKALVSDQLHRHLDIDVKVAV-ACIGEITRITLHLKP-----LTEVFHLIVS 60
           MQS LTPSLKAL+SDQL RH DIDVKVAV ACI EITRIT    P     + EVFHLIVS
Sbjct: 51  MQSALTPSLKALISDQLLRHSDIDVKVAVAACISEITRITAPDAPYNDEQMKEVFHLIVS 110

Query: 61  SFENLSDKSSRSYANRASIL 75
           SFENLSDKSSRSYA RASIL
Sbjct: 111 SFENLSDKSSRSYAKRASIL 130

[Close]

BLAST of Spg006745 vs. ExPASy TrEMBL
Match: A0A6J1HBT1 (protein starmaker-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462578 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.2e-19
Identity = 62/80 (77.50%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 1   MQSVLTPSLKALVSDQLHRHLDIDVKVAV-ACIGEITRITLHLKP-----LTEVFHLIVS 60
           MQS LTPSLKAL+SDQL RH DIDVKVAV ACI EITRIT    P     + EVFHLIVS
Sbjct: 51  MQSALTPSLKALISDQLLRHSDIDVKVAVAACISEITRITAPDAPYNDEQMKEVFHLIVS 110

Query: 61  SFENLSDKSSRSYANRASIL 75
           SFENLSDKSSRSYA RASIL
Sbjct: 111 SFENLSDKSSRSYAKRASIL 130

[Close]

BLAST of Spg006745 vs. ExPASy TrEMBL
Match: A0A6J1KIV6 (protein starmaker-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496136 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.4e-19
Identity = 62/80 (77.50%), Postives = 63/80 (78.75%), Query Frame = 0


Query: 1   MQSVLTPSLKALVSDQLHRHLDIDVKVAV-ACIGEITRITLHLKP-----LTEVFHLIVS 60
           MQS L PSLKALVSDQL RH DIDVKVAV ACI EITRIT    P     + EVFHLIVS
Sbjct: 51  MQSALAPSLKALVSDQLLRHSDIDVKVAVAACISEITRITAPDAPYNDEQMKEVFHLIVS 110

Query: 61  SFENLSDKSSRSYANRASIL 75
           SFENLSDKSSRSYA RASIL
Sbjct: 111 SFENLSDKSSRSYAKRASIL 130

[Close]

BLAST of Spg006745 vs. TAIR 10
Match: AT4G31880.1 (LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast hits to 70781 proteins in 2973 species: Archae - 289; Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants - 6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI BLink). )

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-16
Identity = 50/80 (62.50%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 1   MQSVLTPSLKALVSDQLHRHLDIDVKVAV-ACIGEITRITLHLKP-----LTEVFHLIVS 60
           MQ+ LTP +K LV  +L +H D+DVKVAV ACI EITRIT    P     + EVF LIVS
Sbjct: 51  MQNALTPLMKGLVGGKLFKHSDVDVKVAVAACISEITRITAPDAPYDDDQMKEVFKLIVS 110

Query: 61  SFENLSDKSSRSYANRASIL 75
           SFE+L DKSSRSYA R SIL
Sbjct: 111 SFEDLVDKSSRSYAKRISIL 130

[Close]

BLAST of Spg006745 vs. TAIR 10
Match: AT4G31880.2 (LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1). )

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-16
Identity = 50/80 (62.50%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 1   MQSVLTPSLKALVSDQLHRHLDIDVKVAV-ACIGEITRITLHLKP-----LTEVFHLIVS 60
           MQ+ LTP +K LV  +L +H D+DVKVAV ACI EITRIT    P     + EVF LIVS
Sbjct: 51  MQNALTPLMKGLVGGKLFKHSDVDVKVAVAACISEITRITAPDAPYDDDQMKEVFKLIVS 110

Query: 61  SFENLSDKSSRSYANRASIL 75
           SFE+L DKSSRSYA R SIL
Sbjct: 111 SFEDLVDKSSRSYAKRISIL 130

[Close]

BLAST of Spg006745 vs. TAIR 10
Match: AT1G80810.1 (Tudor/PWWP/MBT superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-09
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 1  MQSVLTPSLKALVSDQLHRHLDIDVKVA-VACIGEITRITLHLKP-----LTEVFHLIVS 60
          MQS L PS  ALVS  L  H D DV+V+ V+C+ EI RIT    P     + E+F L + 
Sbjct: 1  MQSALIPSRNALVSVDLLSHPDSDVRVSVVSCLTEIVRITAPETPYSDDLMKEIFRLTIE 60

Query: 61 SFENLSDKSSRSYANRASILMN 77
          +FE L+D SSRSY     +L N
Sbjct: 61 AFEKLADASSRSYKKAEFVLDN 82

[Close]

BLAST of Spg006745 vs. TAIR 10
Match: AT1G80810.2 (Tudor/PWWP/MBT superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-09
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 1  MQSVLTPSLKALVSDQLHRHLDIDVKVA-VACIGEITRITLHLKP-----LTEVFHLIVS 60
          MQS L PS  ALVS  L  H D DV+V+ V+C+ EI RIT    P     + E+F L + 
Sbjct: 1  MQSALIPSRNALVSVDLLSHPDSDVRVSVVSCLTEIVRITAPETPYSDDLMKEIFRLTIE 60

Query: 61 SFENLSDKSSRSYANRASILMN 77
          +FE L+D SSRSY     +L N
Sbjct: 61 AFEKLADASSRSYKKAEFVLDN 82

[Close]

BLAST of Spg006745 vs. TAIR 10
Match: AT1G15940.1 (Tudor/PWWP/MBT superfamily protein )

HSP 1 Score: 52.8 bits (125), Expect = 1.5e-07
Identity = 33/80 (41.25%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 1   MQSVLTPSLKALVSDQLHRHLDIDVKVA-VACIGEITRITLHLKP-----LTEVFHLIVS 60
           +Q  L P ++ALVS  L R+ D DV+V+ V+C+ EI RIT    P     + ++F + + 
Sbjct: 55  VQKALHPPMRALVSADLLRNPDSDVRVSVVSCLTEIMRITAPEAPYNDEQMKDIFQVTIE 114

Query: 61  SFENLSDKSSRSYANRASIL 75
           +FE L+D SSRSY     IL
Sbjct: 115 AFEKLADASSRSYRKAEVIL 134

The following BLAST results are available for this feature:

BLAST of Spg006745 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545878.1	4.6e-19	77.50	E3 ubiquitin-protein ligase RBBP6-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022961960.1	4.6e-19	77.50	protein starmaker-like isoform X1 [Cucurbita moschata]	[more]
XP_022996453.1	4.6e-19	77.50	protein starmaker-like isoform X2 [Cucurbita maxima]	[more]
KAG7029481.1	4.6e-19	77.50	Sister chromatid cohesion protein PDS5-like B-B [Cucurbita argyrosperma subsp. a...	[more]
XP_022996452.1	4.6e-19	77.50	protein starmaker-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Spg006745 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg006745 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KAT2	2.2e-19	77.50	protein starmaker-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491697 PE...	[more]
A0A6J1K1Y9	2.2e-19	77.50	protein starmaker-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491697 PE...	[more]
A0A6J1HDP8	2.2e-19	77.50	protein starmaker-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462578 ...	[more]
A0A6J1HBT1	2.2e-19	77.50	protein starmaker-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462578 ...	[more]
A0A6J1KIV6	6.4e-19	77.50	protein starmaker-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496136 PE...	[more]

BLAST of Spg006745 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31880.1	1.3e-16	62.50	LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED D...	[more]
AT4G31880.2	1.3e-16	62.50	LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 gro...	[more]
AT1G80810.1	2.0e-09	46.34	Tudor/PWWP/MBT superfamily protein	[more]
AT1G80810.2	2.0e-09	46.34	Tudor/PWWP/MBT superfamily protein	[more]
AT1G15940.1	1.5e-07	41.25	Tudor/PWWP/MBT superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039776	Sister chromatid cohesion protein Pds5	PANTHER	PTHR12663	ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED	coord: 1..74
None	No IPR available	PANTHER	PTHR12663:SF3	TRANSCRIPTIONAL REGULATOR	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006745.1	Spg006745.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0035825	homologous recombination
biological_process	GO:0009556	microsporogenesis
biological_process	GO:0007064	mitotic sister chromatid cohesion
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus