Spg006730 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006730
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribosome assembly factor mrt4
Location	scaffold1: 54781406 .. 54783883 (+)
RNA-Seq Expression	Spg006730
Synteny	Spg006730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGATTGTTTTTTGGAGCAAACAAAGTCATGCAGGTTTCTCTTGGTCGAACTGCTTCTGATGAGATTCGACCAGGCCTTTACAAGGTTTCTAAGGTGAATCTCTTTTTCCACATTGCATATAGTTTGAGTGTTCCTTTTCTGTAGCCGTTGGGAAGTAACATCCACTCTTCAATTTTTCAGCTTCTGCAGGGAAATACTGGACTTTGTTTCACAAACTTACCAAAAGAAGAGGTTGAGAGGTAAACCAGACATAGTCTATTTTTAACATTGGCAAGCTCTGCCAAAAGTGATAAATTGTATAGTTGCTATTTCCTTTGTCAATTTAAATACCACAGTATTTAAATTTAATTCACTATGCATTCTGTTTTTAGTTTAGTAATTGAAGTATCCGATAAATTGTGCTCATAAATTTCCATATTTATGAATGCAAAATTCTGAAATTTTCATTTGGGAAAGACGTTAAAATGAAAAAAAAAATTTGTCTTTGGTGTTGAAAAGGAAGGAATAGAAAAGAAAAAGTTAATCTTTGAAGTCGAAGTTGAAAACAAAAATTGAAATTGGTATGTCTTCAAAGTCAAAACAACAATTTTCCAACTTCATAATATCGCATAGTTATGACTATTTTTCTGTGCCAAATTCAATAAAAATTTACAATCTGGATTATGATTACAGTTTTGCAACCCAACCCCCAACCCAAAACAGAAACAAAAGAAGATTGTTATTGTCGGTAGTAAGATTCTCTTAATGGGTTGTTGACATTTCAATTCTATAAGAAGGGACTTTCAGAATTCGTAAAATGCTTAAAAGGAAATGCTCGGGTATTTGCTGTTTTACAATAATGCTTGGTTTAATTTTTAATGTTTTGTTATACAGGTTATTTAATGAGTATGTGGATTATGATTATGCAAGGACTGGAAGTGCAGCCACAGAAAAGGTTTCTGCCCCTTCGAACACATGACATTTATTTAGTTTTCTTTTATAATAAACTGATTTTTATTTTTCATGGTTCTAAAACTGATTGCACTTTTTGAGTGTAATGAATAATGATTCAACAAAAAGGTCTAGTATCATCTTATATCATGTGTTATAATATGCATGAACTTGGTGGTTGGTTGCTTTATTGAAGTTTTAATGATATTAGGTTGAGCTTAAGGAAGGTCCTCTGGAGCAGTTTAGCCATGAGATGGAGCCTTCTCTACGGAAGTTGGGTTTGCCTGTTCGTTTGAATAAGGGTCAGTAAATACACACATTGTGCTTGCAAGCCCTACTTATTACTTATAGTAAATAAAATGTTGGTTATAAATCAGAATTGTTGAGGAATTGCAGGTGTGGTGGAACTTGTATCAGACTTCGTTGTATGTGAGGAGGGCAAGTCTCTATCACCGGAGTCAGCTGGCATACTGGTTTGTATCATGTCATGACTTTCTCTTTCCTCAAATATGTATTGAATTTGATTTGACTTGTAAACGAGGTTCGATAGGCTTGTTTCTTGGTTTGTTATTTTGAGAATAAGATGTGTTGGTGGAAGTAGCATTTTTTTGTTGCTTCCAATTCCCATCTCAAATTAAGAATTAAGGGTGTGTTTGGAGATGCTTTTAGAATAAGTACTTTTAGAAAAGCACTCTTGTTATAGGCACTTAAGTAATTATAGGCATTTTATATTTTGGGGGCTGACTGAGATGTTTGATTTGATATGGTTGCAGCGTGCATTGGGGATAAGGATGGCAACTTTTCGGCTGAATTTGGTGTGCAGATGGAGCCCTGGTGACTATGAACTTTATATTGATGGACCAGATAATTCTGACGTTGAATCCGCCTAAAATCTCCAACACAGGAAATCTCATTATTTACTACTTACCAATTAGGATAATATATATGAATGAATGCCCCTCCTCCGTAGGATTCAATGCCATAATATGAATGGCATTGGGACTTGTGGTTTTGTTTTTGTAGATTATTTTAGAAATTCTCAATTTTGTTGTGTTTAGTGTGGATAGACGAGTATTATTGTGAGTTGGTAGCTTTTCATTTGTATTATTATCTGATGCGTTTGGCTTTACATTCAAAGAAGATAGTACTTTATGAAATTCTAACAATTTTGGGTATGTTATAAAATGTTGGATACAAGAATTGTTGAATGTACAATATAATTAATATAGAATAATGGCAAAATTATTGAAGGCGGGTGCAAAGAAATCACTGGAGATGAGGGCTGTAGCACAAGGGTTGAAGGGTATAAGACCTTCGTGGAATCCCACATCGACCTCACAGAAGTGCAAGTGGGCTAGAATGGTTTGGTTATGGTTTGGCGAACAAGGCTACGGAATGCATCCTCCCAAGTAATAGAAGATATTGCTTGTTAGGATTACACTGTTTAGTTTTGCTTTGTGGTTCTGTTCTTTATAGTTTATACATTGAAAAGAAAAAGTATACTAGAAATATTCACTTGGTGAAAATGCATCTCTGTGTCTG

mRNA sequence

ATGGATAGATTGTTTTTTGGAGCAAACAAAGTCATGCAGGTTTCTCTTGGTCGAACTGCTTCTGATGAGATTCGACCAGGCCTTTACAAGGTTTCTAAGCTTCTGCAGGGAAATACTGGACTTTGTTTCACAAACTTACCAAAAGAAGAGGTTGAGAGGTTATTTAATGAGTATGTGGATTATGATTATGCAAGGACTGGAAGTGCAGCCACAGAAAAGGTTGAGCTTAAGGAAGGTCCTCTGGAGCAGTTTAGCCATGAGATGGAGCCTTCTCTACGGAAGTTGGGTTTGCCTGTTCGTTTGAATAAGGGTGTGGTGGAACTTGTATCAGACTTCGTTGTATGTGAGGAGGGCAAGTCTCTATCACCGGAGTCAGCTGGCATACTGCGTGCATTGGGGATAAGGATGGCAACTTTTCGGCTGAATTTGGTGTGCAGATGGAGCCCTGGTGACTATGAACTTTATATTGATGGACCAGATAATTCTGACGTTGAATCCGCCTAA

Coding sequence (CDS)

ATGGATAGATTGTTTTTTGGAGCAAACAAAGTCATGCAGGTTTCTCTTGGTCGAACTGCTTCTGATGAGATTCGACCAGGCCTTTACAAGGTTTCTAAGCTTCTGCAGGGAAATACTGGACTTTGTTTCACAAACTTACCAAAAGAAGAGGTTGAGAGGTTATTTAATGAGTATGTGGATTATGATTATGCAAGGACTGGAAGTGCAGCCACAGAAAAGGTTGAGCTTAAGGAAGGTCCTCTGGAGCAGTTTAGCCATGAGATGGAGCCTTCTCTACGGAAGTTGGGTTTGCCTGTTCGTTTGAATAAGGGTGTGGTGGAACTTGTATCAGACTTCGTTGTATGTGAGGAGGGCAAGTCTCTATCACCGGAGTCAGCTGGCATACTGCGTGCATTGGGGATAAGGATGGCAACTTTTCGGCTGAATTTGGTGTGCAGATGGAGCCCTGGTGACTATGAACTTTATATTGATGGACCAGATAATTCTGACGTTGAATCCGCCTAA

Protein sequence

MDRLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA

Homology

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BLAST of Spg006730 vs. NCBI nr
Match: XP_038902849.1 (mRNA turnover protein 4 homolog [Benincasa hispida])

HSP 1 Score: 326.2 bits (835), Expect = 1.6e-85
Identity = 159/165 (96.36%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYD 62
           RLFFGANKVMQVSLGR+AS+EIRPGL+KVSKLL GNTGLCFTNLPKEEVERLFNEYVDYD
Sbjct: 65  RLFFGANKVMQVSLGRSASNEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 124

Query: 63  YARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLS 122
           YARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLS
Sbjct: 125 YARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLS 184

Query: 123 PESAGILRALGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA 168
           PESAGILRALGIRMATFRL+LVCRWSPGD+ELYIDGPDNSDVESA
Sbjct: 185 PESAGILRALGIRMATFRLHLVCRWSPGDFELYIDGPDNSDVESA 229

[Close]

BLAST of Spg006730 vs. NCBI nr
Match: XP_022933518.1 (mRNA turnover protein 4 homolog [Cucurbita moschata] >KAG6588508.1 mRNA turnover protein 4-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 325.5 bits (833), Expect = 2.7e-85
Identity = 157/165 (95.15%), Postives = 162/165 (98.18%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYD 62
           RLFFGANKVMQVSLGRTASDEI+PGLYKVSKLL GNTGLCFTNLPKEEVERLFNEYVDYD
Sbjct: 65  RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 124

Query: 63  YARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLS 122
           YARTGS ATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDF VCEEGKSLS
Sbjct: 125 YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGKSLS 184

Query: 123 PESAGILRALGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA 168
           PESAGILRALGIRMATFRLNLVCRWSPG++ELYIDGPDNSD+E+A
Sbjct: 185 PESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 229

[Close]

BLAST of Spg006730 vs. NCBI nr
Match: XP_023529350.1 (mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.9 bits (829), Expect = 7.9e-85
Identity = 156/165 (94.55%), Postives = 162/165 (98.18%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYD 62
           RLFFGANKVMQVSLGRTAS+EI+PGLYKVSKLL GNTGLCFTNLPKEEVERLFNEYVDYD
Sbjct: 65  RLFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 124

Query: 63  YARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLS 122
           YARTGS ATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDF VCEEGKSLS
Sbjct: 125 YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGKSLS 184

Query: 123 PESAGILRALGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA 168
           PESAGILRALGIRMATFRLNLVCRWSPG++ELYIDGPDNSD+E+A
Sbjct: 185 PESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 229

[Close]

BLAST of Spg006730 vs. NCBI nr
Match: XP_022969955.1 (mRNA turnover protein 4 homolog [Cucurbita maxima])

HSP 1 Score: 322.4 bits (825), Expect = 2.3e-84
Identity = 156/165 (94.55%), Postives = 161/165 (97.58%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYD 62
           RLFFGANKVMQVSLGRTASDEI+PGLYKVSKLL GNTGLCFTNLPKEEVERLFNEYVDYD
Sbjct: 65  RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 124

Query: 63  YARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLS 122
           YARTGS ATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDF VCEEGKSLS
Sbjct: 125 YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGKSLS 184

Query: 123 PESAGILRALGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA 168
           PESAGILRALGIRMATFRLNLVCRWSPG++ELYIDGPD SD+E+A
Sbjct: 185 PESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIETA 229

[Close]

BLAST of Spg006730 vs. NCBI nr
Match: XP_022157470.1 (mRNA turnover protein 4 homolog [Momordica charantia])

HSP 1 Score: 315.8 bits (808), Expect = 2.2e-82
Identity = 152/165 (92.12%), Postives = 160/165 (96.97%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYD 62
           RLFFGANKVMQVSLGRT SDEIRPGL+K+SKLL GNTGLCFTNLPKEEVERLFNEY DYD
Sbjct: 65  RLFFGANKVMQVSLGRTVSDEIRPGLHKISKLLHGNTGLCFTNLPKEEVERLFNEYEDYD 124

Query: 63  YARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLS 122
           YARTGS ATEKVELKEGPLEQFSHEMEPSLRKLG+PVRLNKGVVELVSDFVVCEEGK+LS
Sbjct: 125 YARTGSTATEKVELKEGPLEQFSHEMEPSLRKLGMPVRLNKGVVELVSDFVVCEEGKALS 184

Query: 123 PESAGILRALGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA 168
           PESAGILRALGIRMA+FRLNLVCRWSPGD++LYI+G DNSDVESA
Sbjct: 185 PESAGILRALGIRMASFRLNLVCRWSPGDFQLYIEGLDNSDVESA 229

[Close]

BLAST of Spg006730 vs. ExPASy Swiss-Prot
Match: A4FV84 (mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.8e-40
Identity = 79/145 (54.48%), Postives = 101/145 (69.66%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYD 62
           R+FFG NKVM V+LGR+ SDE +  L++VSK L+G  GL FTN  KEEV+  F +Y + D
Sbjct: 64  RMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVDEWFTKYTEMD 123

Query: 63  YARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLS 122
           YAR G+ AT  V L  GPLEQF H MEP LR+LGLP  L KGVV L+SD+ VC+EG  L+
Sbjct: 124 YARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGDVLT 183

Query: 123 PESAGILRALGIRMATFRLNLVCRW 148
           PE A +L+  G  MA F++++   W
Sbjct: 184 PEQARVLKLFGYEMAEFKVSIKYMW 208

[Close]

BLAST of Spg006730 vs. ExPASy Swiss-Prot
Match: Q9UKD2 (mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2)

HSP 1 Score: 162.2 bits (409), Expect = 5.2e-39
Identity = 77/145 (53.10%), Postives = 98/145 (67.59%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYD 62
           R+FFG NKVM V+LGR+ SDE +  L++VSK L+G  GL FTN  KEEV   F +Y + D
Sbjct: 64  RMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYTEMD 123

Query: 63  YARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLS 122
           YAR G+ A   V L  GPLEQF H MEP LR+LGLP  L +GVV L+SD+ VC+EG  L+
Sbjct: 124 YARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGDVLT 183

Query: 123 PESAGILRALGIRMATFRLNLVCRW 148
           PE A +L+  G  MA F++ +   W
Sbjct: 184 PEQARVLKLFGYEMAEFKVTIKYMW 208

[Close]

BLAST of Spg006730 vs. ExPASy Swiss-Prot
Match: Q9D0I8 (mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.9e-39
Identity = 78/145 (53.79%), Postives = 99/145 (68.28%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYD 62
           R+FFG NKVM V+LGR+ SDE +  L++VSK L+G  GL FTN  KEEV   F +Y + D
Sbjct: 64  RMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYTEMD 123

Query: 63  YARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLS 122
           +AR G+ AT  V L  GPL+QF H MEP LR+LGLP  L KGVV L+SD+ VC+EG  L+
Sbjct: 124 FARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGDVLT 183

Query: 123 PESAGILRALGIRMATFRLNLVCRW 148
           PE A IL+  G  MA F++ +   W
Sbjct: 184 PEQARILKLFGYEMAEFKVIIKYMW 208

[Close]

BLAST of Spg006730 vs. ExPASy Swiss-Prot
Match: Q86HD3 (Ribosome assembly factor mrt4 OS=Dictyostelium discoideum OX=44689 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.2e-28
Identity = 54/152 (35.53%), Postives = 94/152 (61.84%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYD 62
           +  FG NKV+ V LG++  DE++P L+K+++ L+G  GL FTN PK++V   F  Y + D
Sbjct: 64  KFLFGKNKVLSVGLGKSEEDELKPNLHKLTEHLEGECGLFFTNEPKDKVFEYFTNYSEKD 123

Query: 63  YARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLS 122
           + R+G  + E + +KEGP+   +H ME  LR LGLP  L  GV+ +  ++ +CE G +++
Sbjct: 124 FPRSGFVSEETITIKEGPIVGMTHSMETYLRGLGLPTTLKNGVIFVDREYTLCEAGVAVT 183

Query: 123 PESAGILRALGIRMATFRLNLVCRWSPGDYEL 155
           PE + +L+     ++ F+ ++   W+  ++ L
Sbjct: 184 PEQSQLLKLFNHEISEFKFHIKGFWNEDEFTL 215

[Close]

BLAST of Spg006730 vs. ExPASy Swiss-Prot
Match: Q7S302 (Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-23
Identity = 61/170 (35.88%), Postives = 87/170 (51.18%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYD 62
           R+FFG  K+   +LG T  D    GL K+SK L G+ GL FTN    E++  F      D
Sbjct: 64  RIFFGKTKLTARALGTTPEDAQADGLDKLSKYLSGSVGLIFTNRDPSEIKDYFVNLTQVD 123

Query: 63  YARTGSAATEKVELKEGPLEQ------------FSHEMEPSLRKLGLPVRLNKGVVEL-- 122
           +AR GS AT  + +  GPL               SH +EP LR+LG+P R+ KG V L  
Sbjct: 124 FARAGSVATRTITIPSGPLYSTGGEVPAEHDVPVSHTLEPELRRLGMPTRMVKGKVCLGD 183

Query: 123 ----VSDFVVCEEGKSLSPESAGILRALGIRMATFRLNLVCRWSPGDYEL 155
                 D+V+C+EG++L      +L+   I ++ FR+ L+  WS    E+
Sbjct: 184 EAGEGDDYVICKEGETLDSRQTRLLKLFSICLSEFRVKLLAYWSAASGEV 233

[Close]

BLAST of Spg006730 vs. ExPASy TrEMBL
Match: A0A6J1F4Z2 (Ribosome assembly factor mrt4 OS=Cucurbita moschata OX=3662 GN=LOC111440919 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.3e-85
Identity = 157/165 (95.15%), Postives = 162/165 (98.18%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYD 62
           RLFFGANKVMQVSLGRTASDEI+PGLYKVSKLL GNTGLCFTNLPKEEVERLFNEYVDYD
Sbjct: 65  RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 124

Query: 63  YARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLS 122
           YARTGS ATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDF VCEEGKSLS
Sbjct: 125 YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGKSLS 184

Query: 123 PESAGILRALGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA 168
           PESAGILRALGIRMATFRLNLVCRWSPG++ELYIDGPDNSD+E+A
Sbjct: 185 PESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 229

[Close]

BLAST of Spg006730 vs. ExPASy TrEMBL
Match: A0A6J1I1E2 (Ribosome assembly factor mrt4 OS=Cucurbita maxima OX=3661 GN=LOC111468997 PE=3 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.1e-84
Identity = 156/165 (94.55%), Postives = 161/165 (97.58%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYD 62
           RLFFGANKVMQVSLGRTASDEI+PGLYKVSKLL GNTGLCFTNLPKEEVERLFNEYVDYD
Sbjct: 65  RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 124

Query: 63  YARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLS 122
           YARTGS ATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDF VCEEGKSLS
Sbjct: 125 YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGKSLS 184

Query: 123 PESAGILRALGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA 168
           PESAGILRALGIRMATFRLNLVCRWSPG++ELYIDGPD SD+E+A
Sbjct: 185 PESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIETA 229

[Close]

BLAST of Spg006730 vs. ExPASy TrEMBL
Match: A0A6J1DT71 (Ribosome assembly factor mrt4 OS=Momordica charantia OX=3673 GN=LOC111024162 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.0e-82
Identity = 152/165 (92.12%), Postives = 160/165 (96.97%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYD 62
           RLFFGANKVMQVSLGRT SDEIRPGL+K+SKLL GNTGLCFTNLPKEEVERLFNEY DYD
Sbjct: 65  RLFFGANKVMQVSLGRTVSDEIRPGLHKISKLLHGNTGLCFTNLPKEEVERLFNEYEDYD 124

Query: 63  YARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLS 122
           YARTGS ATEKVELKEGPLEQFSHEMEPSLRKLG+PVRLNKGVVELVSDFVVCEEGK+LS
Sbjct: 125 YARTGSTATEKVELKEGPLEQFSHEMEPSLRKLGMPVRLNKGVVELVSDFVVCEEGKALS 184

Query: 123 PESAGILRALGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA 168
           PESAGILRALGIRMA+FRLNLVCRWSPGD++LYI+G DNSDVESA
Sbjct: 185 PESAGILRALGIRMASFRLNLVCRWSPGDFQLYIEGLDNSDVESA 229

[Close]

BLAST of Spg006730 vs. ExPASy TrEMBL
Match: A0A5A7TFH5 (Ribosome assembly factor mrt4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00790 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.4e-79
Identity = 147/156 (94.23%), Postives = 153/156 (98.08%), Query Frame = 0


Query: 12  MQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSAAT 71
           MQVSLGR+ASDEIRPGL+KVSKLL GNTGLCFTNLPKEEVERLFNEY DYDYARTGSAA+
Sbjct: 1   MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS 60

Query: 72  EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 131
           EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA
Sbjct: 61  EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 120

Query: 132 LGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA 168
           LG+RMA FRLNLVCRWSPGD+ELYIDGP+NSDVESA
Sbjct: 121 LGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 156

[Close]

BLAST of Spg006730 vs. ExPASy TrEMBL
Match: A0A0A0LM77 (Ribosome assembly factor mrt4 OS=Cucumis sativus OX=3659 GN=Csa_2G302060 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.2e-78
Identity = 146/160 (91.25%), Postives = 154/160 (96.25%), Query Frame = 0


Query: 8   ANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYDYARTG 67
           +NKVMQ+SLGR+ SDEIRPGL+KVSKLL GNTGLCFTNLPKEEVERLFNEY DYDYARTG
Sbjct: 48  SNKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTG 107

Query: 68  SAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAG 127
           SAA+EKVELKEGPL QFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAG
Sbjct: 108 SAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAG 167

Query: 128 ILRALGIRMATFRLNLVCRWSPGDYELYIDGPDNSDVESA 168
           ILRALG+R A FRLNLVCRWSPGD+ELYIDGP+NSDVESA
Sbjct: 168 ILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 207

[Close]

BLAST of Spg006730 vs. TAIR 10
Match: AT1G25260.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 238.0 bits (606), Expect = 5.3e-63
Identity = 116/171 (67.84%), Postives = 140/171 (81.87%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYD 62
           + F G+NKVMQV+LGR+A DE+R G+YKVSKLL+G+TGL  T++PKEEVE LFN Y D D
Sbjct: 65  KFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAYEDSD 124

Query: 63  YARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLS 122
           ++RTGS A E VELKEGPLEQF+HEMEP LRKL +PVRLNKG VELV+DFVVCEEGK LS
Sbjct: 125 FSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLS 184

Query: 123 PESAGILRALGIRMATFRLNLVCRWSPGDYELYIDG------PDNSDVESA 168
           P+SA ILR L ++MATF+LNL+CRWSP D+ELY +        D SDVE++
Sbjct: 185 PKSAHILRLLRMKMATFKLNLLCRWSPSDFELYREDLSELYREDLSDVETS 235

[Close]

BLAST of Spg006730 vs. TAIR 10
Match: AT3G11250.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 58.2 bits (139), Expect = 7.6e-09
Identity = 39/142 (27.46%), Postives = 68/142 (47.89%), Query Frame = 0


Query: 4   LFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYDY 63
           +  G N +M+ S+   + +     +  +  LLQGN GL FT    +EV     +Y     
Sbjct: 53  VLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAP 112

Query: 64  ARTGSAATEKVELKEGPLEQFSHEMEPS----LRKLGLPVRLNKGVVELVSDFVVCEEGK 123
           AR G  A   V ++ G     +  ++PS     + L +P ++NKG VE+++   + ++G 
Sbjct: 113 ARVGLVAPIDVVVQPG-----NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGD 172

Query: 124 SLSPESAGILRALGIRMATFRL 142
            +    A +L  LGIR  ++ L
Sbjct: 173 KVGSSEAALLAKLGIRPFSYGL 189

[Close]

BLAST of Spg006730 vs. TAIR 10
Match: AT3G09200.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 57.8 bits (138), Expect = 9.9e-09
Identity = 39/142 (27.46%), Postives = 68/142 (47.89%), Query Frame = 0


Query: 4   LFFGANKVMQVSLGRTASDEIRPGLYKVSKLLQGNTGLCFTNLPKEEVERLFNEYVDYDY 63
           +  G N +M+ S+   + +     +  +  LLQGN GL FT    +EV     +Y     
Sbjct: 53  VLMGKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAP 112

Query: 64  ARTGSAATEKVELKEGPLEQFSHEMEPS----LRKLGLPVRLNKGVVELVSDFVVCEEGK 123
           AR G  A   V ++ G     +  ++PS     + L +P ++NKG VE+++   + ++G 
Sbjct: 113 ARVGLVAPIDVVVQPG-----NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGD 172

Query: 124 SLSPESAGILRALGIRMATFRL 142
            +    A +L  LGIR  ++ L
Sbjct: 173 KVGSSEAALLAKLGIRPFSYGL 189

[Close]

BLAST of Spg006730 vs. TAIR 10
Match: AT3G09200.2 (Ribosomal protein L10 family protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-07
Identity = 35/112 (31.25%), Postives = 56/112 (50.00%), Query Frame = 0


Query: 34  LLQGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSAATEKVELKEGPLEQFSHEMEPS-- 93
           LLQGN GL FT    +EV     +Y     AR G  A   V ++ G     +  ++PS  
Sbjct: 50  LLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPG-----NTGLDPSQT 109

Query: 94  --LRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGIRMATFRL 142
              + L +P ++NKG VE+++   + ++G  +    A +L  LGIR  ++ L
Sbjct: 110 SFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGL 156

The following BLAST results are available for this feature:

BLAST of Spg006730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902849.1	1.6e-85	96.36	mRNA turnover protein 4 homolog [Benincasa hispida]	[more]
XP_022933518.1	2.7e-85	95.15	mRNA turnover protein 4 homolog [Cucurbita moschata] >KAG6588508.1 mRNA turnover...	[more]
XP_023529350.1	7.9e-85	94.55	mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022969955.1	2.3e-84	94.55	mRNA turnover protein 4 homolog [Cucurbita maxima]	[more]
XP_022157470.1	2.2e-82	92.12	mRNA turnover protein 4 homolog [Momordica charantia]	[more]

BLAST of Spg006730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4FV84	2.8e-40	54.48	mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1	[more]
Q9UKD2	5.2e-39	53.10	mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2	[more]
Q9D0I8	8.9e-39	53.79	mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1	[more]
Q86HD3	4.2e-28	35.53	Ribosome assembly factor mrt4 OS=Dictyostelium discoideum OX=44689 GN=mrt4 PE=3 ...	[more]
Q7S302	1.1e-23	35.88	Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-...	[more]

BLAST of Spg006730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F4Z2	1.3e-85	95.15	Ribosome assembly factor mrt4 OS=Cucurbita moschata OX=3662 GN=LOC111440919 PE=3...	[more]
A0A6J1I1E2	1.1e-84	94.55	Ribosome assembly factor mrt4 OS=Cucurbita maxima OX=3661 GN=LOC111468997 PE=3 S...	[more]
A0A6J1DT71	1.0e-82	92.12	Ribosome assembly factor mrt4 OS=Momordica charantia OX=3673 GN=LOC111024162 PE=...	[more]
A0A5A7TFH5	5.4e-79	94.23	Ribosome assembly factor mrt4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A0A0LM77	1.2e-78	91.25	Ribosome assembly factor mrt4 OS=Cucumis sativus OX=3659 GN=Csa_2G302060 PE=3 SV...	[more]

BLAST of Spg006730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25260.1	5.3e-63	67.84	Ribosomal protein L10 family protein	[more]
AT3G11250.1	7.6e-09	27.46	Ribosomal protein L10 family protein	[more]
AT3G09200.1	9.9e-09	27.46	Ribosomal protein L10 family protein	[more]
AT3G09200.2	1.9e-07	31.25	Ribosomal protein L10 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040637	60S ribosomal protein L10P, insertion domain	PFAM	PF17777	RL10P_insert	coord: 64..134 e-value: 2.3E-23 score: 82.0
IPR043164	50S ribosomal protein L10, insertion domain superfamily	GENE3D	3.90.105.20		coord: 63..136 e-value: 7.2E-55 score: 187.4
IPR043141	Ribosomal protein L10-like domain superfamily	GENE3D	3.30.70.1730		coord: 3..148 e-value: 7.2E-55 score: 187.4
None	No IPR available	PANTHER	PTHR45841:SF4	RIBOSOME ASSEMBLY FACTOR MRT4	coord: 3..166
None	No IPR available	PANTHER	PTHR45841	MRNA TURNOVER PROTEIN 4 MRTO4	coord: 3..166
IPR033867	Ribosome assembly factor Mrt4	CDD	cd05796	Ribosomal_P0_like	coord: 2..122 e-value: 2.42359E-68 score: 202.808

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006730.1	Spg006730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor