Spg006723 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg006723
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA polymerase epsilon subunit C
Locationscaffold1: 55749666 .. 55751661 (-)
RNA-Seq ExpressionSpg006723
SyntenySpg006723
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCATCAACCATCATAGCGGAGGTTTAACTTTCTATGAGCTGCAATGTTTTCAATTCATGATACAAGGGACCCAATTTCATAATGACTGTTTTCTTTCTGTATTCATGCTGCAAAATGAATATGAGCATGATGGTCATTTATTGAGTAGTGACAAGGAAGATGTCATGATCGAGGTCATAGTTTAATATGGGCTGTGATCTTAGATTTAGTTTACTCCAATTACTTATAGGGACTTGAATTATCAGCCTCTATCTATCGTGTTATTGTGATGGAGAATTACTCAATTGAATTATCAGTGCATTGCTTTGTGCTTTTAAAGAGTGAATTTATTTGGTGGCATGGAAATTTTAGATAAATCATTTAACAAAGCCCACATCATTTCTGGCTGGATGATTTACTAACCCAAATTATGTTTAGAGATAGACCCCCATAAGTTTTCATATATGAGGAAGAAGAAATGGCCAGTGGAAGTAAATTAGTTCAGTCTGAATCTGATTCTTGGGAAGGGAATAAGTTAGATGGGGATGGGGGCTGAAACTGTTATCAGCTTTCCTTCTCTTGGGTAACTGTAAGTTAGGTGATCGAGGATACAGGAAAGGAGAGAATTGGAGAATAATATATTTGGGAATTTAAAATGGGAAGGCCATCATGAGTCTAGTATGAAATTTAGGAAAGAATAGTAAGGGTCCGTTTGGAATACATTTTAATTTAAATGTTTTTCAAGAATGCATTTTTTTAAAAACATTTTGTATACAAATTGTTTAAAATATAAACACTCATATGTTTGGTTACATTTCCTCACAAGTGTTTTTATACTCAAGTTATTGTATATTTAAAAACTCTTTCTAGAAAAGTTGGTTTCAAGTGTTTCTCTCAAAATGATTTATTTCTCAATCTCATTTTCTAATAAGTCATTTTTAGTAGTTGCCAAACACTAGAAATTTTTTCAAAATGACTTTTTTTTTTTTTTTTTTTTCAAAATTAAACACTTGAAAAGTTAAACTAAACATAGCCTAAGACTCCTGCATCTCTTCCCTCGGTAGAAAGTGAATTCAAATCTCTATCATCTGGCTAGGTGATTTTATGAAACGATGCTGAAATTCTGACAAGCCTTTCACTTCACATACTGCTTCATTTTATCTGCCATTGCTTCAACTTTCACTTGAAGGACTTGAAACATGTATGTGTTGAATTGCTCATTAAACGGAAGAACATGCATTTGTTGTATTTCTTGTTTGCACATCATTGAATATCTATGCATATACTACCAACTTGAGCATAACTCAACTGGCTGAAGCATATCCTTGACCAAACGGTCAAAGGTTCAAATCTTCACTCTCTCCCACATGTTGTTGAATAATAATAACAATTATAATAAAAGAATATCTATGCATGTTCTGTACTGTACCTTCAGGTATCAAAGAAGCATTGTTTTAGATGTAAGATTTTCACTGCAGCAGTAGTAAGTGTAAGACCCTTCTTTGTTGTTGCAGCATCAACAGTTTCCAAAAGGAAGAGATATGACTTTCTTTCAGGTACTTCTACATGCCTCTTTCTACTCTTATTTCAAATGATGAGAAAGATGCCAGTCTCTAACTCGATAGACGCCTTATAGAATATCACTATTCTTTTTGCTCTCACCAGATTTTGTCCCAGAGAAATTAAAATTTGAAGATGCATTAAAGGAGAGAAGCACGGCAGAGTCTGGGAAAGACTAGGCTTCTTGATATTTTAATCTGACACTTCATCTTGTTTGTTCTTTGGATGTGTTATATTCAGGCATCTCTTTTTTATCGTGTCAATGTAATACATGGAAGTTAGAAGTTAGAACATACATTTTTCCTCCGTACAGTCATGTAGTTTATTAACGACATCTCAGATTTAACAGGAATTCTAACAAAAGTTACATAAAAAAGGGAGGTTTTATTATTATTATTATTATTATTATATTTTTAGTTTAAAGAAAAAAGAAGGGTCATTGAGATTCATGCC

mRNA sequence

ATGCCCATCAACCATCATAGCGGAGGTTTAACTTTCTATGAGCTGCAATGTTTTCAATTCATGATACAAGGGACCCAATTTCATAATGACTGTTTTCTTTCTGTATTCATGCTGCAAAATGAATATGAGCATGATGGTCATTTATTGAGTAGTGACAAGGAAGATGTCATGATCGAGGTATCAAAGAAGCATTGTTTTAGATGTAAGATTTTCACTGCAGCAGTAGTAAGTGTAAGACCCTTCTTTGTTGTTGCAGCATCAACAGTTTCCAAAAGGAAGAGATATGACTTTCTTTCAGATTTTGTCCCAGAGAAATTAAAATTTGAAGATGCATTAAAGGAGAGAAGCACGGCAGAGTCTGGGAAAGACTAG

Coding sequence (CDS)

ATGCCCATCAACCATCATAGCGGAGGTTTAACTTTCTATGAGCTGCAATGTTTTCAATTCATGATACAAGGGACCCAATTTCATAATGACTGTTTTCTTTCTGTATTCATGCTGCAAAATGAATATGAGCATGATGGTCATTTATTGAGTAGTGACAAGGAAGATGTCATGATCGAGGTATCAAAGAAGCATTGTTTTAGATGTAAGATTTTCACTGCAGCAGTAGTAAGTGTAAGACCCTTCTTTGTTGTTGCAGCATCAACAGTTTCCAAAAGGAAGAGATATGACTTTCTTTCAGATTTTGTCCCAGAGAAATTAAAATTTGAAGATGCATTAAAGGAGAGAAGCACGGCAGAGTCTGGGAAAGACTAG

Protein sequence

MPINHHSGGLTFYELQCFQFMIQGTQFHNDCFLSVFMLQNEYEHDGHLLSSDKEDVMIEVSKKHCFRCKIFTAAVVSVRPFFVVAASTVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD
Homology
[Close]
BLAST of Spg006723 vs. NCBI nr
Match: XP_008463933.1 (PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 8.9e-09
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 86  ASTVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD 124
           +S VSKRKRYDFLSDFVPEKLKFEDALKERS AESGKD
Sbjct: 185 SSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

[Close]
BLAST of Spg006723 vs. NCBI nr
Match: XP_004149539.2 (chromatin accessibility complex protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 8.9e-09
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 86  ASTVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD 124
           +S VSKRKRYDFLSDFVPEKLKFEDALKERS AESGKD
Sbjct: 185 SSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

[Close]
BLAST of Spg006723 vs. NCBI nr
Match: XP_022986059.1 (DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-08
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 86  ASTVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD 124
           +S V KRKRYDFLSDFVPEKLKFEDALKERS AESGKD
Sbjct: 191 SSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 228

[Close]
BLAST of Spg006723 vs. NCBI nr
Match: KAG7010622.1 (Chromatin accessibility complex protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-08
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 86  ASTVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD 124
           +S V KRKRYDFLSDFVPEKLKFEDALKERS AESGKD
Sbjct: 187 SSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 224

[Close]
BLAST of Spg006723 vs. NCBI nr
Match: KAG6570775.1 (Chromatin accessibility complex 16kD protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-08
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 86  ASTVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD 124
           +S V KRKRYDFLSDFVPEKLKFEDALKERS AESGKD
Sbjct: 187 SSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 224

[Close]
BLAST of Spg006723 vs. ExPASy TrEMBL
Match: A0A0A0KCQ2 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G294440 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.3e-09
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 86  ASTVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD 124
           +S VSKRKRYDFLSDFVPEKLKFEDALKERS AESGKD
Sbjct: 185 SSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

[Close]
BLAST of Spg006723 vs. ExPASy TrEMBL
Match: A0A1S3CKU7 (DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.3e-09
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 86  ASTVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD 124
           +S VSKRKRYDFLSDFVPEKLKFEDALKERS AESGKD
Sbjct: 185 SSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

[Close]
BLAST of Spg006723 vs. ExPASy TrEMBL
Match: A0A6J1JF10 (DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483919 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-08
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 86  ASTVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD 124
           +S V KRKRYDFLSDFVPEKLKFEDALKERS AESGKD
Sbjct: 191 SSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 228

[Close]
BLAST of Spg006723 vs. ExPASy TrEMBL
Match: A0A6J1FVY8 (DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448974 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-08
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 86  ASTVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD 124
           +S V KRKRYDFLSDFVPEKLKFEDALKERS AESGKD
Sbjct: 180 SSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 217

[Close]
BLAST of Spg006723 vs. ExPASy TrEMBL
Match: A0A6J1CGZ0 (DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.1e-08
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 0 

Query: 86  ASTVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGK 123
           +S V KRKRYDFLSDFVPEKLKFEDALKERS AESGK
Sbjct: 193 SSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 229

The following BLAST results are available for this feature:
BLAST of Spg006723 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008463933.18.9e-0992.11PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo][more]
XP_004149539.28.9e-0992.11chromatin accessibility complex protein 1 isoform X1 [Cucumis sativus][more]
XP_022986059.13.4e-0889.47DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita maxima][more]
KAG7010622.13.4e-0889.47Chromatin accessibility complex protein 1, partial [Cucurbita argyrosperma subsp... [more]
KAG6570775.13.4e-0889.47Chromatin accessibility complex 16kD protein, partial [Cucurbita argyrosperma su... [more]
BLAST of Spg006723 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg006723 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCQ24.3e-0992.11CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G2944... [more]
A0A1S3CKU74.3e-0992.11DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV... [more]
A0A6J1JF101.6e-0889.47DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1FVY81.6e-0889.47DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1CGZ08.1e-0889.19DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 ... [more]
BLAST of Spg006723 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg006723.1Spg006723.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0046982 protein heterodimerization activity