Spg006702 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006702
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Transaldolase
Location	scaffold1: 55169472 .. 55170266 (-)
RNA-Seq Expression	Spg006702
Synteny	Spg006702

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACAGCAGCAACCACCGTCGAAGCTCGACCTTCGACGATTCCAGCAGCACCAGTCGAGGTCCACGGCAGCGAAATTGCAGCGTCTCCTCGTCGGTAAGTGTCGACAGGTGGGTTAGATTTTCTTCCTTCGCTCTCACCGATCTCCCAGACAACAACCACATCAACAAATCAGACTTCAGATCCGCCAAACAGCCCAGACGACAGTGTGGGTTTGTCGTTGTGTGGCTGTCGCCGATCTCACGACTTGTAGGAATATGGTAGGAAGATGGCACACAACAGACTAGTCGTGAACAAACCCACGAACAGCCACAGATCTCGAGATCTGGAGACGGGGGAGATGTGGGTTTCGTCGTGGGTTACAGATTTGGAGATCTGGAGACGTGGGTTTTGCCAGAAACGTGGGTGTCGCGCTAGATGCTCGCCAGCGGCAGCTCGCTGGAAAACCGGACACTGTAAGTGCTCTAATATCACATATCTCTTCCCGACGACAAATACACTATCAAATTGTTTAAAAAGGTGTTCTACTTTCTTATCTGAATTGTAATGCTTTCTCGTCAGGTTTTGACCATGCCTGACTAAGCTCTTGAAGCATTTATTGACCATTGAGCTGTTTCGAGGACTATCGATTCAAACGTATCTGAGGTCGAAGGGATATACAGTGCACTTGAGAAGCTGGGAAATGACTGGACTGAAGTTGGGAATCAACTTGAAGTTGAGGGAGTGGATTCTTTCAAGAAGAGCTTTGACAGCCTGCTTAATACTCTCCAAGACAAGGCCATTAAACTCTCTTAA

mRNA sequence

ATGTACAGCAGCAACCACCGTCGAAGCTCGACCTTCGACGATTCCAGCAGCACCAGTCGAGGTCCACGGCAGCGAAATTGCAGCGTCTCCTCGTCGGAATATGGTAGGAAGATGGCACACAACAGACTAGTCGTGAACAAACCCACGAACAGCCACAGATCTCGAGATCTGGAGACGGGGGAGATGTGGGTTTCGTCGTGGGTTACAGATTTGGAGATCTGGAGACGTGGGTTTTGCCAGAAACGTGGGTGTCGCGCTAGATGCTCGCCAGCGGCAGCTCGCTGGAAAACCGGACACTCTGTTTCGAGGACTATCGATTCAAACGTATCTGAGGTCGAAGGGATATACAGTGCACTTGAGAAGCTGGGAAATGACTGGACTGAAGTTGGGAATCAACTTGAAGTTGAGGGAGTGGATTCTTTCAAGAAGAGCTTTGACAGCCTGCTTAATACTCTCCAAGACAAGGCCATTAAACTCTCTTAA

Coding sequence (CDS)

ATGTACAGCAGCAACCACCGTCGAAGCTCGACCTTCGACGATTCCAGCAGCACCAGTCGAGGTCCACGGCAGCGAAATTGCAGCGTCTCCTCGTCGGAATATGGTAGGAAGATGGCACACAACAGACTAGTCGTGAACAAACCCACGAACAGCCACAGATCTCGAGATCTGGAGACGGGGGAGATGTGGGTTTCGTCGTGGGTTACAGATTTGGAGATCTGGAGACGTGGGTTTTGCCAGAAACGTGGGTGTCGCGCTAGATGCTCGCCAGCGGCAGCTCGCTGGAAAACCGGACACTCTGTTTCGAGGACTATCGATTCAAACGTATCTGAGGTCGAAGGGATATACAGTGCACTTGAGAAGCTGGGAAATGACTGGACTGAAGTTGGGAATCAACTTGAAGTTGAGGGAGTGGATTCTTTCAAGAAGAGCTTTGACAGCCTGCTTAATACTCTCCAAGACAAGGCCATTAAACTCTCTTAA

Protein sequence

MYSSNHRRSSTFDDSSSTSRGPRQRNCSVSSSEYGRKMAHNRLVVNKPTNSHRSRDLETGEMWVSSWVTDLEIWRRGFCQKRGCRARCSPAAARWKTGHSVSRTIDSNVSEVEGIYSALEKLGNDWTEVGNQLEVEGVDSFKKSFDSLLNTLQDKAIKLS

Homology

[Close]

BLAST of Spg006702 vs. NCBI nr
Match: XP_008454148.1 (PREDICTED: transaldolase [Cucumis melo] >TYK29628.1 transaldolase [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-19
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 100 SVSRTIDSNVSEVEGIYSALEKLGNDWTEVGNQLEVEGVDSFKKSFDSLLNTLQDKAIKL 159
           +VSRTIDSNVSE EGIYSALEKLG DW EVGNQLEVEGVDSFKKSFDSLLNTLQDKA  L
Sbjct: 377 TVSRTIDSNVSEAEGIYSALEKLGIDWNEVGNQLEVEGVDSFKKSFDSLLNTLQDKANSL 436

[Close]

BLAST of Spg006702 vs. NCBI nr
Match: XP_022158675.1 (uncharacterized protein LOC111025138 [Momordica charantia])

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-19
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 100 SVSRTIDSNVSEVEGIYSALEKLGNDWTEVGNQLEVEGVDSFKKSFDSLLNTLQDKAIKL 159
           +VSRTIDSNVSE EGIYSALEKLG DW EVGNQLEVEGVDSFKKSFDSLLNTLQDKA  L
Sbjct: 376 AVSRTIDSNVSEAEGIYSALEKLGIDWNEVGNQLEVEGVDSFKKSFDSLLNTLQDKANSL 435

[Close]

BLAST of Spg006702 vs. NCBI nr
Match: XP_022980880.1 (uncharacterized protein LOC111480133 [Cucurbita maxima])

HSP 1 Score: 104.8 bits (260), Expect = 7.2e-19
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 100 SVSRTIDSNVSEVEGIYSALEKLGNDWTEVGNQLEVEGVDSFKKSFDSLLNTLQDKAIKL 159
           +VSRTIDSNVSE EGIYSALEKLG DW EVGNQLEVEGVDSFKKSF+SLLNTLQDKA  L
Sbjct: 377 TVSRTIDSNVSEAEGIYSALEKLGIDWNEVGNQLEVEGVDSFKKSFESLLNTLQDKANSL 436

[Close]

BLAST of Spg006702 vs. NCBI nr
Match: XP_022955732.1 (uncharacterized protein LOC111457643 [Cucurbita moschata] >KAG7018395.1 tal [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.8 bits (260), Expect = 7.2e-19
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 100 SVSRTIDSNVSEVEGIYSALEKLGNDWTEVGNQLEVEGVDSFKKSFDSLLNTLQDKAIKL 159
           +VSRTIDSNVSE EGIYSALEKLG DW EVGNQLEVEGVDSFKKSF+SLLNTLQDKA  L
Sbjct: 377 TVSRTIDSNVSEAEGIYSALEKLGIDWNEVGNQLEVEGVDSFKKSFESLLNTLQDKANSL 436

[Close]

BLAST of Spg006702 vs. NCBI nr
Match: XP_023528027.1 (uncharacterized protein LOC111791070 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.8 bits (260), Expect = 7.2e-19
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 100 SVSRTIDSNVSEVEGIYSALEKLGNDWTEVGNQLEVEGVDSFKKSFDSLLNTLQDKAIKL 159
           +VSRTIDSNVSE EGIYSALEKLG DW EVGNQLEVEGVDSFKKSF+SLLNTLQDKA  L
Sbjct: 377 TVSRTIDSNVSEAEGIYSALEKLGIDWNEVGNQLEVEGVDSFKKSFESLLNTLQDKANSL 436

[Close]

BLAST of Spg006702 vs. ExPASy TrEMBL
Match: A0A5D3E1I6 (Transaldolase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G002400 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 100 SVSRTIDSNVSEVEGIYSALEKLGNDWTEVGNQLEVEGVDSFKKSFDSLLNTLQDKAIKL 159
           +VSRTIDSNVSE EGIYSALEKLG DW EVGNQLEVEGVDSFKKSFDSLLNTLQDKA  L
Sbjct: 377 TVSRTIDSNVSEAEGIYSALEKLGIDWNEVGNQLEVEGVDSFKKSFDSLLNTLQDKANSL 436

[Close]

BLAST of Spg006702 vs. ExPASy TrEMBL
Match: A0A6J1DWH7 (Transaldolase OS=Momordica charantia OX=3673 GN=LOC111025138 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 100 SVSRTIDSNVSEVEGIYSALEKLGNDWTEVGNQLEVEGVDSFKKSFDSLLNTLQDKAIKL 159
           +VSRTIDSNVSE EGIYSALEKLG DW EVGNQLEVEGVDSFKKSFDSLLNTLQDKA  L
Sbjct: 376 AVSRTIDSNVSEAEGIYSALEKLGIDWNEVGNQLEVEGVDSFKKSFDSLLNTLQDKANSL 435

[Close]

BLAST of Spg006702 vs. ExPASy TrEMBL
Match: A0A1S3BYP7 (Transaldolase OS=Cucumis melo OX=3656 GN=LOC103494637 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 100 SVSRTIDSNVSEVEGIYSALEKLGNDWTEVGNQLEVEGVDSFKKSFDSLLNTLQDKAIKL 159
           +VSRTIDSNVSE EGIYSALEKLG DW EVGNQLEVEGVDSFKKSFDSLLNTLQDKA  L
Sbjct: 377 TVSRTIDSNVSEAEGIYSALEKLGIDWNEVGNQLEVEGVDSFKKSFDSLLNTLQDKANSL 436

[Close]

BLAST of Spg006702 vs. ExPASy TrEMBL
Match: A0A6J1IXT7 (Transaldolase OS=Cucurbita maxima OX=3661 GN=LOC111480133 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.5e-19
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 100 SVSRTIDSNVSEVEGIYSALEKLGNDWTEVGNQLEVEGVDSFKKSFDSLLNTLQDKAIKL 159
           +VSRTIDSNVSE EGIYSALEKLG DW EVGNQLEVEGVDSFKKSF+SLLNTLQDKA  L
Sbjct: 377 TVSRTIDSNVSEAEGIYSALEKLGIDWNEVGNQLEVEGVDSFKKSFESLLNTLQDKANSL 436

[Close]

BLAST of Spg006702 vs. ExPASy TrEMBL
Match: A0A6J1GUF1 (Transaldolase OS=Cucurbita moschata OX=3662 GN=LOC111457643 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.5e-19
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 100 SVSRTIDSNVSEVEGIYSALEKLGNDWTEVGNQLEVEGVDSFKKSFDSLLNTLQDKAIKL 159
           +VSRTIDSNVSE EGIYSALEKLG DW EVGNQLEVEGVDSFKKSF+SLLNTLQDKA  L
Sbjct: 377 TVSRTIDSNVSEAEGIYSALEKLGIDWNEVGNQLEVEGVDSFKKSFESLLNTLQDKANSL 436

[Close]

BLAST of Spg006702 vs. TAIR 10
Match: AT5G13420.1 (Aldolase-type TIM barrel family protein )

HSP 1 Score: 92.4 bits (228), Expect = 3.5e-19
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 101 VSRTIDSNVSEVEGIYSALEKLGNDWTEVGNQLEVEGVDSFKKSFDSLLNTLQDKA 157
           V RTID+NVSE EGIYSALEKLG DW +VG QLE EGVDSFKKSF+SLL TLQDKA
Sbjct: 375 VKRTIDANVSEAEGIYSALEKLGIDWNKVGEQLEDEGVDSFKKSFESLLGTLQDKA 430

The following BLAST results are available for this feature:

BLAST of Spg006702 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454148.1	2.5e-19	90.00	PREDICTED: transaldolase [Cucumis melo] >TYK29628.1 transaldolase [Cucumis melo ...	[more]
XP_022158675.1	2.5e-19	90.00	uncharacterized protein LOC111025138 [Momordica charantia]	[more]
XP_022980880.1	7.2e-19	88.33	uncharacterized protein LOC111480133 [Cucurbita maxima]	[more]
XP_022955732.1	7.2e-19	88.33	uncharacterized protein LOC111457643 [Cucurbita moschata] >KAG7018395.1 tal [Cuc...	[more]
XP_023528027.1	7.2e-19	88.33	uncharacterized protein LOC111791070 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg006702 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg006702 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E1I6	1.2e-19	90.00	Transaldolase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G002400...	[more]
A0A6J1DWH7	1.2e-19	90.00	Transaldolase OS=Momordica charantia OX=3673 GN=LOC111025138 PE=3 SV=1	[more]
A0A1S3BYP7	1.2e-19	90.00	Transaldolase OS=Cucumis melo OX=3656 GN=LOC103494637 PE=3 SV=1	[more]
A0A6J1IXT7	3.5e-19	88.33	Transaldolase OS=Cucurbita maxima OX=3661 GN=LOC111480133 PE=3 SV=1	[more]
A0A6J1GUF1	3.5e-19	88.33	Transaldolase OS=Cucurbita moschata OX=3662 GN=LOC111457643 PE=3 SV=1	[more]

BLAST of Spg006702 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13420.1	3.5e-19	82.14	Aldolase-type TIM barrel family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013785	Aldolase-type TIM barrel	GENE3D	3.20.20.70	Aldolase class I	coord: 87..156 e-value: 2.6E-11 score: 45.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR10683:SF37	BNAA08G02750D PROTEIN	coord: 100..158
IPR001585	Transaldolase/Fructose-6-phosphate aldolase	PANTHER	PTHR10683	TRANSALDOLASE	coord: 100..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006702.1	Spg006702.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0009809	lignin biosynthetic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009749	response to glucose
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004801	transaldolase activity
molecular_function	GO:0003824	catalytic activity