Spg006680 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006680
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Location	scaffold1: 55486596 .. 55490354 (+)
RNA-Seq Expression	Spg006680
Synteny	Spg006680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGTACTGCTCGTTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAAAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACGAACATATCGCTGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAAGACTATAGTGCAAGATGATCAGCCACAGTGTTCTTCTTTGGTCGCTTCACTATCCATTCAACAACTCCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTAAGAGGATTGATAACTTGAGAACGCCAATCGAGTATCAGCCACCAAAATTTCAGCAGTTTGATGGAAAGGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCGGGTACTCGAGGGGACCTACTAGTCAAGCAGTTCGTTCGAACACTTAAAGGAAATGCTTTTGCCTGGTACACTGATCTAGAACCCGAGTCAGTAGACAGTTGGGAGGAACTCGAAAGAGAGTTTTTGAATCGCTTCTACAGCACTAGACGAACCGTTAGCATGTTCGAGCTCACCAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGCTATGAGTCTAGATTGCAAAGATCGCCTCACTAAACTCTCTTCCGTTGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGGTATAAAGTCTCGCACCTTTGAGGAACTAGCAACTCGCGCCCACGATATGGAGCTAAGTATTGCTAGTCGAGAAAACCAAGACCTTCTCCTCCCTAACATTAGAAAAGAAGGAAGGAACGACGAAGAGACTATAGAAGAATCTATGGTTATCAACACATCTCTTCCCAAGTCGTCTTCGAAAGAAAAGCGACAAACAAATGGAGTGCATCACTTAACTTTAAAGGAAAGACAGAAGAAAATCTATCCTTTCCCTGATGCCGACATCCCTGATATGCTGGAACAATTACTGGAAGCGCAACTGATAGAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGCCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTTGTCCTAAAGGACTTAATTCTAAACCTAGCTATGGAAGGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTAATGTTGAATAAATCCTTCTCCAAAAATTTCCACAAAAAGGAAAAAGAGAACTTTGCGACTTCCTACTGCATTGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAAGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTTCACTCGATCTTCAACTTTCCAAAGGCTAAGTGTCTCCAAATTGAAGAAAAGTCAACATTCGACATCTGTTTTTGATCGCCTTAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAATAGCGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTACGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCTCATTGTTTTGACCAATCCTACAAGTCAATGATCTGATCAAGACCATGATGAAGATAAGAAAATTTAAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTACATGATGCTCCTAGCCCACACAAGCTTAAAAGGTGAGTTCAAAAAAACTTGAACTACGTTATGACTTGATCCCTTTCCTTCAAGGGTACGTAGGCAGCTTAAATAAAACTTTAAGTTCAGTCCTTGCAAACAAAAACAAAAAAGTGCCACAAATATAGAAACATGACAATACAAGTTAAAGATGCTTACCCTTACTGGGGGCAACACAGTAAATTGAAGACGTACATTGCTATGAATGGAATGCTACGAATTAAATGCATAAAAGAAGGCTCCGTTCTTTCAAGTTTGACGATTCACTCGCTCCAAGTCCGACGTCTCGCCTAGTTCGGTGTCTCGCTCCTTCTATGTTTGCATTCCACACACTTCAAGTTCGGTGTTTCGCTCCTTCAAAGTTTGGAGTCTCACCCCCTTTAAGTTTGGTGTTATGTTTCCTCTAAGTTTGCATTCTTCATGCTTCAAGTTCGGTGTTTCGCTCCTTCAAAGTTCGACGTCTCACCTTCTCCACGTTCGGCGATTGCTCCATTCAAGTTTGGCTTATCACTTGTCCCAAGTTCGATACCTCGCTTCACCTTCAAAGGGTGGCAGTTGAAGGCTTCGTTTTCACTTCATCTTCAAATCTTCAAAGGTTGTCGTTGAAAACTTTGCTTCACTACAAATGTTGTCGGTTGAAGACTTCACTATCACTTCATCTTCAAACTTTGGCGGTCTACATCACTTCATTTTCAAAGGTTGACCACTGACAACTTTGCTTCATCTCCAAAAGATAGTGGTGGAATGATTCGTTGTCGCTTAATCTTCAAAAGTTGGCAGTTGACGACTTCGCTTCGTTTTCAAAAGTTGGTAGTTGAAAGTGTTGCTCCATCTTCAAAGATTAATAGTCAACAACTTTGTTTCATCTTCAAAGGTTGACAGTTGAATGCTTTGCTTTCGCTACATCTTCAAAAGTTGACGATTGGTGGCCCCGCATCTTCTTCAAAAGTTGACGGTTGGCGACCTCGCTCCTTCTTCAAAGTTGACAGTTGACAACTTCATTTCAAAGTTGGCGGCTGACGACTTCACTTCATCTTCAAAAGTTGACGGTTGGCGGTCTCGCTTCTTCTTCAAAAATTGACAGTTGACAACTTCACTTCATATTCAAAAGTTGACGGTTGAAGTTTTCGCTTTAGAACATCTGCAAAGATGAACAACTTTAGCGTTGCCTTTATCTTGAAAGTGTCTAGACTGGAAGATGCATCTTAGCTGCAAGTTAAAAAAAATGCTTGATATCAAACCACAAAAAAAAAAAAAAAAAAAAGAAAGACAATAAATGTGTTGTTAAAAAATGGTGACCACCCCTGCACGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAGTCACTGCAATTGAATCTGATGACGACGTTGTAGGCGAGTCTGGTGATCACCCATGTAGGATACTACAGTCATCAAAGTGACAGGTCTAGACAGGTGGTGAAGTCACTACAAGTGAATCTGATGATGACCGTTGTAGGCGAGTCTGGTGACCACCCCTTCAAGATGCTACAGTCATCAAAGTGACTGGTCTAGACAGGTGATGAAGTCCCTACAAGTGAATATGATGACGACCGTTGTAGGCGAGTCGAGTCTGGTGACCGTCTACAGGCTACTTAG

mRNA sequence

ATGAGTTGTACTGCTCGTTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAAAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACGAACATATCGCTGAATCAAAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAAGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTTCACTCGATCTTCAACTTTCCAAAGGCTAAGTGTCTCCAAATTGAAGAAAAGTCAACATTCGACATCTGTTTTTGATCGCCTTAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAATAGCGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTACGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTTGCATTCTTCATGCTTCAAGTTCGGTGTTTCGCTCCTTCAAAGTTCGACGTCTCACCTTCTCCACGTTCGGCGATTGCTCCATTCAAGTTTGGCTTATCACTTGTCCCAAGTTCGATACCTCGCTTCACCTTCAAAGGGTGGCAGTTGAAGGCTTCGTTTTCACTTCATCTTCAAATCTTCAAAGGTGGTGAAGTCACTGCAATTGAATCTGATGACGACGTTGTAGGCGAGTCTGGTGATCACCCATGTGATGAAGTCCCTACAAGTGAATATGATGACGACCGTTGTAGGCGAGTCGAGTCTGGTGACCGTCTACAGGCTACTTAG

Coding sequence (CDS)

ATGAGTTGTACTGCTCGTTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAAAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACGAACATATCGCTGAATCAAAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAAGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTTCACTCGATCTTCAACTTTCCAAAGGCTAAGTGTCTCCAAATTGAAGAAAAGTCAACATTCGACATCTGTTTTTGATCGCCTTAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAATAGCGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTACGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTTGCATTCTTCATGCTTCAAGTTCGGTGTTTCGCTCCTTCAAAGTTCGACGTCTCACCTTCTCCACGTTCGGCGATTGCTCCATTCAAGTTTGGCTTATCACTTGTCCCAAGTTCGATACCTCGCTTCACCTTCAAAGGGTGGCAGTTGAAGGCTTCGTTTTCACTTCATCTTCAAATCTTCAAAGGTGGTGAAGTCACTGCAATTGAATCTGATGACGACGTTGTAGGCGAGTCTGGTGATCACCCATGTGATGAAGTCCCTACAAGTGAATATGATGACGACCGTTGTAGGCGAGTCGAGTCTGGTGACCGTCTACAGGCTACTTAG

Protein sequence

MSCTARCCFNELTLQEDKASIVAGQETTLQGAYTNDKFLVKYNPLFEPDSDVVTVMMTETKTMEERMAEMQEHINTLMKAIEEKDSQIAQLKSQIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRTKRKFSVLINTEGSLKFAFFMLQVRCFAPSKFDVSPSPRSAIAPFKFGLSLVPSSIPRFTFKGWQLKASFSLHLQIFKGGEVTAIESDDDVVGESGDHPCDEVPTSEYDDDRCRRVESGDRLQAT

Homology

[Close]

BLAST of Spg006680 vs. NCBI nr
Match: KAA0051515.1 (hypothetical protein E6C27_scaffold174G00380 [Cucumis melo var. makuwa] >TYK24151.1 hypothetical protein E5676_scaffold610G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 4.6e-31
Identity = 85/155 (54.84%), Postives = 105/155 (67.74%), Query Frame = 0


Query: 97  NEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSST 156
           N H   S+EVDNS + +Q+ SVFDRIKP TTR SVFQR+SMA  EEENQC   T+TR+S 
Sbjct: 54  NNHYGSSEEVDNSNEIKQRISVFDRIKPLTTRSSVFQRLSMATREEENQCPTFTYTRTSK 113

Query: 157 FQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRTKR 216
           F+RLS+S LKK++ STS FDRLK+T+DQ +R+M +L+ K F E N D K+ S +PSR KR
Sbjct: 114 FKRLSISTLKKARPSTSAFDRLKMTNDQQQREMKSLKAKSFHEENDDDKVHSRVPSRMKR 173

Query: 217 KFSVLINTEGSLK-----------FAFFMLQVRCF 241
           K SV INT+G                F MLQ R F
Sbjct: 174 KLSVDINTKGEASPLLQNVDQGTLLCFDMLQTRIF 208

[Close]

BLAST of Spg006680 vs. NCBI nr
Match: KAA0063719.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 3.0e-30
Identity = 84/159 (52.83%), Postives = 112/159 (70.44%), Query Frame = 0


Query: 70  MQEHINTLMKAIEEKDSQIAQLKSQIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRP 129
           +++H   +++      + IA++ +  ++      KEVDNS + +Q+TSVFDRIKP TTR 
Sbjct: 156 LEDHPKEILEVTACHTTSIAEVDNNYDS-----YKEVDNSNEIKQRTSVFDRIKPLTTRS 215

Query: 130 SVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKM 189
           SVFQR+SMA  EEENQC  ST+ R+STF+RLS+S  KK + STS FDRLK+T+DQ +R+M
Sbjct: 216 SVFQRLSMATKEEENQCPTSTYARTSTFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREM 275

Query: 190 DNLEVKLFDEVNSDKKLQSSIPSRTKRKFSVLINTEGSL 229
             L+ K F E N D K+ S +PSR KRK SV INTEGSL
Sbjct: 276 KFLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 309

[Close]

BLAST of Spg006680 vs. NCBI nr
Match: TYK14888.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 8.6e-30
Identity = 80/135 (59.26%), Postives = 101/135 (74.81%), Query Frame = 0


Query: 94  QIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTR 153
           +++N +   SKEV+NS +  Q+TSVFDRIKP TTR SVFQR+SMA  EEENQC    +TR
Sbjct: 52  EVDNNY-GSSKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSMATKEEENQCPTFIYTR 111

Query: 154 SSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSR 213
           +STF+RLS+S  KK + STS FDRLK+T+DQ +R+M + + K F E N D K+ S +PSR
Sbjct: 112 TSTFKRLSISTSKKDRPSTSAFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSR 171

Query: 214 TKRKFSVLINTEGSL 229
            KRK SV INTEGSL
Sbjct: 172 MKRKLSVDINTEGSL 185

[Close]

BLAST of Spg006680 vs. NCBI nr
Match: TYK09793.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 8.6e-30
Identity = 80/135 (59.26%), Postives = 101/135 (74.81%), Query Frame = 0


Query: 94  QIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTR 153
           +++N +   SKEV+NS +  Q+TSVFDRIKP TTR SVFQR+SMA  EEENQC    +TR
Sbjct: 457 EVDNNY-GSSKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSMATKEEENQCPTFIYTR 516

Query: 154 SSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSR 213
           +STF+RLS+S  KK + STS FDRLK+T+DQ +R+M + + K F E N D K+ S +PSR
Sbjct: 517 TSTFKRLSISTSKKDRPSTSAFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSR 576

Query: 214 TKRKFSVLINTEGSL 229
            KRK SV INTEGSL
Sbjct: 577 MKRKLSVDINTEGSL 590

[Close]

BLAST of Spg006680 vs. NCBI nr
Match: KAA0059024.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 8.6e-30
Identity = 80/135 (59.26%), Postives = 101/135 (74.81%), Query Frame = 0


Query: 94  QIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTR 153
           +++N +   SKEV+NS K  Q+TS+FDRIKP TTR SVFQR+SMA  EEENQC    +TR
Sbjct: 222 EVDNNY-GSSKEVNNSNKINQRTSIFDRIKPSTTRSSVFQRLSMATKEEENQCPTFIYTR 281

Query: 154 SSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSR 213
           +STF+RLS+S  KK + STS FDRLK+T+DQ +R+M +L+ K F E N   K+ S +PSR
Sbjct: 282 TSTFKRLSISTSKKDRPSTSAFDRLKMTNDQQQREMKSLKAKPFREENDYDKIHSRVPSR 341

Query: 214 TKRKFSVLINTEGSL 229
            KRK SV INTEGSL
Sbjct: 342 MKRKLSVDINTEGSL 355

[Close]

BLAST of Spg006680 vs. ExPASy TrEMBL
Match: A0A5D3DKF5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold610G00560 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.2e-31
Identity = 85/155 (54.84%), Postives = 105/155 (67.74%), Query Frame = 0


Query: 97  NEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSST 156
           N H   S+EVDNS + +Q+ SVFDRIKP TTR SVFQR+SMA  EEENQC   T+TR+S 
Sbjct: 54  NNHYGSSEEVDNSNEIKQRISVFDRIKPLTTRSSVFQRLSMATREEENQCPTFTYTRTSK 113

Query: 157 FQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRTKR 216
           F+RLS+S LKK++ STS FDRLK+T+DQ +R+M +L+ K F E N D K+ S +PSR KR
Sbjct: 114 FKRLSISTLKKARPSTSAFDRLKMTNDQQQREMKSLKAKSFHEENDDDKVHSRVPSRMKR 173

Query: 217 KFSVLINTEGSLK-----------FAFFMLQVRCF 241
           K SV INT+G                F MLQ R F
Sbjct: 174 KLSVDINTKGEASPLLQNVDQGTLLCFDMLQTRIF 208

[Close]

BLAST of Spg006680 vs. ExPASy TrEMBL
Match: A0A5A7VDY3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G002440 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.4e-30
Identity = 84/159 (52.83%), Postives = 112/159 (70.44%), Query Frame = 0


Query: 70  MQEHINTLMKAIEEKDSQIAQLKSQIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRP 129
           +++H   +++      + IA++ +  ++      KEVDNS + +Q+TSVFDRIKP TTR 
Sbjct: 156 LEDHPKEILEVTACHTTSIAEVDNNYDS-----YKEVDNSNEIKQRTSVFDRIKPLTTRS 215

Query: 130 SVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKM 189
           SVFQR+SMA  EEENQC  ST+ R+STF+RLS+S  KK + STS FDRLK+T+DQ +R+M
Sbjct: 216 SVFQRLSMATKEEENQCPTSTYARTSTFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREM 275

Query: 190 DNLEVKLFDEVNSDKKLQSSIPSRTKRKFSVLINTEGSL 229
             L+ K F E N D K+ S +PSR KRK SV INTEGSL
Sbjct: 276 KFLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 309

[Close]

BLAST of Spg006680 vs. ExPASy TrEMBL
Match: A0A5D3CA53 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00600 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.2e-30
Identity = 78/125 (62.40%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 104 KEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVS 163
           +EVDNS + +Q+T VFDRIKP TTR SVFQR+SMA  EEE QC  ST+TR+STF+RLS+S
Sbjct: 122 EEVDNSNEIKQRTFVFDRIKPLTTRSSVFQRLSMAMKEEEKQCPTSTYTRTSTFKRLSIS 181

Query: 164 KLKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRTKRKFSVLIN 223
             KK + STS FDRLK+T+DQ +++M +L+ K F E N D K+ S +PSR KRK SV IN
Sbjct: 182 TSKKDRPSTSAFDRLKMTNDQQQKEMKSLKAKPFHEKNGDDKIHSRVPSRKKRKLSVDIN 241

Query: 224 TEGSL 229
           TEGSL
Sbjct: 242 TEGSL 246

[Close]

BLAST of Spg006680 vs. ExPASy TrEMBL
Match: A0A5D3CUI5 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2047G00200 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.2e-30
Identity = 80/135 (59.26%), Postives = 101/135 (74.81%), Query Frame = 0


Query: 94  QIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTR 153
           +++N +   SKEV+NS +  Q+TSVFDRIKP TTR SVFQR+SMA  EEENQC    +TR
Sbjct: 52  EVDNNY-GSSKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSMATKEEENQCPTFIYTR 111

Query: 154 SSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSR 213
           +STF+RLS+S  KK + STS FDRLK+T+DQ +R+M + + K F E N D K+ S +PSR
Sbjct: 112 TSTFKRLSISTSKKDRPSTSAFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSR 171

Query: 214 TKRKFSVLINTEGSL 229
            KRK SV INTEGSL
Sbjct: 172 MKRKLSVDINTEGSL 185

[Close]

BLAST of Spg006680 vs. ExPASy TrEMBL
Match: A0A5D3CD55 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00850 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.2e-30
Identity = 80/135 (59.26%), Postives = 101/135 (74.81%), Query Frame = 0


Query: 94  QIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTR 153
           +++N +   SKEV+NS +  Q+TSVFDRIKP TTR SVFQR+SMA  EEENQC    +TR
Sbjct: 457 EVDNNY-GSSKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSMATKEEENQCPTFIYTR 516

Query: 154 SSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSR 213
           +STF+RLS+S  KK + STS FDRLK+T+DQ +R+M + + K F E N D K+ S +PSR
Sbjct: 517 TSTFKRLSISTSKKDRPSTSAFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSR 576

Query: 214 TKRKFSVLINTEGSL 229
            KRK SV INTEGSL
Sbjct: 577 MKRKLSVDINTEGSL 590

The following BLAST results are available for this feature:

BLAST of Spg006680 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051515.1	4.6e-31	54.84	hypothetical protein E6C27_scaffold174G00380 [Cucumis melo var. makuwa] >TYK2415...	[more]
KAA0063719.1	3.0e-30	52.83	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK14888.1	8.6e-30	59.26	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
TYK09793.1	8.6e-30	59.26	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0059024.1	8.6e-30	59.26	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg006680 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg006680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DKF5	2.2e-31	54.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VDY3	1.4e-30	52.83	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CA53	4.2e-30	62.40	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CUI5	4.2e-30	59.26	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3CD55	4.2e-30	59.26	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Spg006680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 60..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 304..332
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 301..338

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006680.1	Spg006680.1	mRNA