Spg006668 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg006668
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTransmembrane protein
Locationscaffold7: 46970028 .. 46971697 (+)
RNA-Seq ExpressionSpg006668
SyntenySpg006668
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGGCATAAACCCTGTGTTGGTTTCGGTCTGTTGGGCGTGACTGGAGAGTGCAGAAATGAAATCGGTGGCTTCACCTTCTTCAGTCGAAGCTTTGAGGAATGGAAGTGATGGAATCGCCTCCGCTCTATCTTCTTCCGATCAGTCTCGTTTGTTGCTTGCCACCAGACCTCCCAGGTACTTCCTCCTCTATCTCTCTCTTCCTTCTCTGCCTTCACTGTCTTTGATTTTGTCCTCACTTCTACAATTGGAATATTGATGACACTCTTCACATTTCGGACAACAGTGATTCTTCTCTGTGATCTGTGAATTGTATTGGATTACTCTCCCCTGTGACAATGTGTTGGGTTGGGGCACACCGTTTAAAACTTTTTCTTAATCGTTAGGATTCTTTTTCTCTTTTCTTCTTTAATAATGGTTCACTTCCATTTTCATTTTATTCAGTATTACAAGGTGGTCGGGTCCTTTGTGCTATTATTTAGAACATATAATCAGAGAGGAATTTGAGGATCTGAAATTTGTGTTGAGGTATTGATATATGATTAAATTTACCGTAATCCATCTATAGCTTTTGGGTTGATATATTTCATTTTGGATATCCACCATGCCTTAGCTTAATAGTCACTAGGACAAGTGAAAATGTTGAACTCTATGGTGATTAGTTACGAGTTCCACGCCCCGTTTAAGAACATTAAAGAAAAGCTTCATTATAGAACGTTCCCTAGAACTTTTTTTTTTTTTTTCTAACTATCCTTTATTTTCAATTCTTTAACACCTATAATTGTTGTGTTTGTTTTGAGGGCTCTAACCATTTTTTATCTTTTTGAGGATGCTACCCTCTCTTTTGTTTAGCTTAATATAGTTAGTCTTTCCTCAAAAGAAAAAGAAGGATTGAGAGAATTTATGTGCTAGATTGAATTTCATTTCTTTTAAGTTTTGAAAACTTTTGTGATTGTTTCTTTTCATCTGGACCGAATAGAAACTATAGAAGTTCAGTCTTCCTCATTTGTTCTAATATGATCAATGTGACTGGTACGAGAGCAGGAAAGTAGTATCAATGTTGACTTGTTCGAAGCTATGCGCTATTTGCTTTGTTGCCGGGGTGGTTGTTGGTTACTCGTTAAAGCGATGTGTCAATCGATGGGTTTCCAAACTGTTGAGGAGATTGAAAGATGATTGATATGCCCATCCCCTTATTCTGGTATGCCAGTTTCATTGATTGTAATTGATAGAAATGAATTCCTGATTTGTTGCTCAATTACGAAAGATAGCTCAATGTTTACTCCTTTGTATTTTAGTAAGGAAAAAAAAAAAAACATTGAGAGCCCTGGAAATATGAAGTTTGAAAACCAACCATTTTTTCTTTCTTTTTTCTAGCAGATTGACCAATTTCTATGAGCATTGTCGCTTCAGCAGGAAAGTCACCAATGTCAAGTGCAATTTTGCATTTTTTTTGTCGTTTGTTTTATTATCTCCATATCTTTTTTTTCCTCCTCTTTTGCATAGGCTAGTACTAGTACATAGTTGTTTCTAGGAATTGTAATTTGGTTGCTAATAAGTATTAAAATTATTGTATAACTATTTGTAAGTCAGTAAGTTTAAAGAATTTGATTGTTTTAGAGAAGTTTCTAGGAACAAACTAAGAAAAACTAAAATTTAAGGCCCCATCGGG

mRNA sequence

ATGAAATCGGTGGCTTCACCTTCTTCAGTCGAAGCTTTGAGGAATGGAAGTGATGGAATCGCCTCCGCTCTATCTTCTTCCGATCAGTCTCGTTTGTTGCTTGCCACCAGACCTCCCAGCAGGAAAGTAGTATCAATGTTGACTTGTTCGAAGCTATGCGCTATTTGCTTTGTTGCCGGGGTGGTTGTTGGTTACTCGTTAAAGCGATGTGTCAATCGATGGGTTTCCAAACTGTTGAGGAGATTGAAAGATGATTGA

Coding sequence (CDS)

ATGAAATCGGTGGCTTCACCTTCTTCAGTCGAAGCTTTGAGGAATGGAAGTGATGGAATCGCCTCCGCTCTATCTTCTTCCGATCAGTCTCGTTTGTTGCTTGCCACCAGACCTCCCAGCAGGAAAGTAGTATCAATGTTGACTTGTTCGAAGCTATGCGCTATTTGCTTTGTTGCCGGGGTGGTTGTTGGTTACTCGTTAAAGCGATGTGTCAATCGATGGGTTTCCAAACTGTTGAGGAGATTGAAAGATGATTGA

Protein sequence

MKSVASPSSVEALRNGSDGIASALSSSDQSRLLLATRPPSRKVVSMLTCSKLCAICFVAGVVVGYSLKRCVNRWVSKLLRRLKDD
Homology
BLAST of Spg006668 vs. NCBI nr
Match: XP_022974252.1 (uncharacterized protein LOC111472885 [Cucurbita maxima])

HSP 1 Score: 136.0 bits (341), Expect = 1.6e-28
Identity = 75/85 (88.24%), Postives = 80/85 (94.12%), Query Frame = 0

Query: 1  MKSVASPSSVEALRNGSDGIASALSSSDQSRLLLATRPPSRKVVSMLTCSKLCAICFVAG 60
          MKS A PSSVEALR+G +GIASALSSSDQSRLLLATRPP R+VVS+LTCSKLC ICFVAG
Sbjct: 1  MKSAALPSSVEALRSG-EGIASALSSSDQSRLLLATRPP-RQVVSILTCSKLCGICFVAG 60

Query: 61 VVVGYSLKRCVNRWVSKLLRRLKDD 86
          V+VGYSLKRCVNRWVSKLLRRLKDD
Sbjct: 61 VLVGYSLKRCVNRWVSKLLRRLKDD 83

BLAST of Spg006668 vs. NCBI nr
Match: XP_023540347.1 (uncharacterized protein LOC111800746 [Cucurbita pepo subsp. pepo] >KAG6597021.1 hypothetical protein SDJN03_10201, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028499.1 hypothetical protein SDJN02_09680 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.4 bits (337), Expect = 4.5e-28
Identity = 76/85 (89.41%), Postives = 79/85 (92.94%), Query Frame = 0

Query: 1  MKSVASPSSVEALRNGSDGIASALSSSDQSRLLLATRPPSRKVVSMLTCSKLCAICFVAG 60
          MKS A PSSVEALRNG +GIASALSSSDQSRLLLATRPP R+VVS+LTCSKLC ICFVAG
Sbjct: 1  MKSAALPSSVEALRNG-EGIASALSSSDQSRLLLATRPP-RQVVSILTCSKLCGICFVAG 60

Query: 61 VVVGYSLKRCVNRWVSKLLRRLKDD 86
          VVVGYSLKR VNRWVSKLLRRLKDD
Sbjct: 61 VVVGYSLKRRVNRWVSKLLRRLKDD 83

BLAST of Spg006668 vs. NCBI nr
Match: XP_038893067.1 (uncharacterized protein LOC120081950 [Benincasa hispida])

HSP 1 Score: 134.0 bits (336), Expect = 5.9e-28
Identity = 73/85 (85.88%), Postives = 77/85 (90.59%), Query Frame = 0

Query: 1  MKSVASPSSVEALRNGSDGIASALSSSDQSRLLLATRPPSRKVVSMLTCSKLCAICFVAG 60
          MKS  S SSVE LRN  +GIASALSSSDQSRLLLATRPP R+VVS+ TCSKLCA+CFVAG
Sbjct: 1  MKSGVSSSSVEVLRNRGEGIASALSSSDQSRLLLATRPP-RQVVSIWTCSKLCAVCFVAG 60

Query: 61 VVVGYSLKRCVNRWVSKLLRRLKDD 86
          VVVGYSLKRCVNRWVSKLLRRLKDD
Sbjct: 61 VVVGYSLKRCVNRWVSKLLRRLKDD 84

BLAST of Spg006668 vs. NCBI nr
Match: XP_022956291.1 (uncharacterized protein LOC111458016 [Cucurbita moschata])

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-27
Identity = 75/85 (88.24%), Postives = 79/85 (92.94%), Query Frame = 0

Query: 1  MKSVASPSSVEALRNGSDGIASALSSSDQSRLLLATRPPSRKVVSMLTCSKLCAICFVAG 60
          MKS A PSSVEALRNG +GIASALSSSDQSRLLLATRPP R+VVS+LTCSKLC ICFVAG
Sbjct: 1  MKSAALPSSVEALRNG-EGIASALSSSDQSRLLLATRPP-RQVVSILTCSKLCGICFVAG 60

Query: 61 VVVGYSLKRCVNRWVSKLLRRLKDD 86
          VVVGYSLKR VNRWVSKLLRRLK+D
Sbjct: 61 VVVGYSLKRRVNRWVSKLLRRLKED 83

BLAST of Spg006668 vs. NCBI nr
Match: KGN51411.1 (hypothetical protein Csa_007923 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 6.1e-25
Identity = 67/84 (79.76%), Postives = 73/84 (86.90%), Query Frame = 0

Query: 1  MKSVASPSSVEALRNGSDGIASALSSSDQSRLLLATRPPSRKVVSMLTCSKLCAICFVAG 60
          MKS  S SSVEALRN  +GIAS+LSS D SR LLATRPP R+VVS+ TCSKLCA+CFV G
Sbjct: 1  MKSGISSSSVEALRNKGEGIASSLSSYDHSRFLLATRPP-RQVVSIWTCSKLCAVCFVTG 60

Query: 61 VVVGYSLKRCVNRWVSKLLRRLKD 85
          VVVGYSLKRCVNRW+SKLLRRLKD
Sbjct: 61 VVVGYSLKRCVNRWISKLLRRLKD 83

BLAST of Spg006668 vs. ExPASy TrEMBL
Match: A0A6J1I9S5 (uncharacterized protein LOC111472885 OS=Cucurbita maxima OX=3661 GN=LOC111472885 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 7.5e-29
Identity = 75/85 (88.24%), Postives = 80/85 (94.12%), Query Frame = 0

Query: 1  MKSVASPSSVEALRNGSDGIASALSSSDQSRLLLATRPPSRKVVSMLTCSKLCAICFVAG 60
          MKS A PSSVEALR+G +GIASALSSSDQSRLLLATRPP R+VVS+LTCSKLC ICFVAG
Sbjct: 1  MKSAALPSSVEALRSG-EGIASALSSSDQSRLLLATRPP-RQVVSILTCSKLCGICFVAG 60

Query: 61 VVVGYSLKRCVNRWVSKLLRRLKDD 86
          V+VGYSLKRCVNRWVSKLLRRLKDD
Sbjct: 61 VLVGYSLKRCVNRWVSKLLRRLKDD 83

BLAST of Spg006668 vs. ExPASy TrEMBL
Match: A0A6J1GW53 (uncharacterized protein LOC111458016 OS=Cucurbita moschata OX=3662 GN=LOC111458016 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.4e-28
Identity = 75/85 (88.24%), Postives = 79/85 (92.94%), Query Frame = 0

Query: 1  MKSVASPSSVEALRNGSDGIASALSSSDQSRLLLATRPPSRKVVSMLTCSKLCAICFVAG 60
          MKS A PSSVEALRNG +GIASALSSSDQSRLLLATRPP R+VVS+LTCSKLC ICFVAG
Sbjct: 1  MKSAALPSSVEALRNG-EGIASALSSSDQSRLLLATRPP-RQVVSILTCSKLCGICFVAG 60

Query: 61 VVVGYSLKRCVNRWVSKLLRRLKDD 86
          VVVGYSLKR VNRWVSKLLRRLK+D
Sbjct: 61 VVVGYSLKRRVNRWVSKLLRRLKED 83

BLAST of Spg006668 vs. ExPASy TrEMBL
Match: A0A0A0KUK2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G529450 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-25
Identity = 67/84 (79.76%), Postives = 73/84 (86.90%), Query Frame = 0

Query: 1  MKSVASPSSVEALRNGSDGIASALSSSDQSRLLLATRPPSRKVVSMLTCSKLCAICFVAG 60
          MKS  S SSVEALRN  +GIAS+LSS D SR LLATRPP R+VVS+ TCSKLCA+CFV G
Sbjct: 1  MKSGISSSSVEALRNKGEGIASSLSSYDHSRFLLATRPP-RQVVSIWTCSKLCAVCFVTG 60

Query: 61 VVVGYSLKRCVNRWVSKLLRRLKD 85
          VVVGYSLKRCVNRW+SKLLRRLKD
Sbjct: 61 VVVGYSLKRCVNRWISKLLRRLKD 83

BLAST of Spg006668 vs. ExPASy TrEMBL
Match: W9RT53 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003318 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.6e-17
Identity = 55/84 (65.48%), Postives = 67/84 (79.76%), Query Frame = 0

Query: 2  KSVASPSSVEALRNGSDGIASALSSSDQSRLLLATRPPSRKVVSMLTCSKLCAICFVAGV 61
          KS +S SS   +   ++GI++ALSS DQSRLL+ +RPP R VVS+ TCSKLCAICFV GV
Sbjct: 16 KSASSSSSTFDIPRVNEGISAALSSPDQSRLLV-SRPP-RNVVSLWTCSKLCAICFVVGV 75

Query: 62 VVGYSLKRCVNRWVSKLLRRLKDD 86
          VVGY+LKR V RW S+LL+RLKDD
Sbjct: 76 VVGYTLKRRVRRWASRLLKRLKDD 97

BLAST of Spg006668 vs. ExPASy TrEMBL
Match: A0A540LSP8 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_024904 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.2e-15
Identity = 45/70 (64.29%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 16 GSDGIASALSSSDQSRLLLATRPPSRKVVSMLTCSKLCAICFVAGVVVGYSLKRCVNRWV 75
          G++G+A+ALSSSDQSR+LL    P+R+VVS+ TCSKLC +CFVAG+VVGY+LKR V  W 
Sbjct: 30 GTEGLAAALSSSDQSRILL--NRPARQVVSLWTCSKLCTLCFVAGIVVGYTLKRRVRSWA 89

Query: 76 SKLLRRLKDD 86
          SKLL++++DD
Sbjct: 90 SKLLKKMRDD 97

BLAST of Spg006668 vs. TAIR 10
Match: AT1G19240.1 (unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 9.8e-13
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 0

Query: 2   KSVASPSSVEALRNGSDGI--------ASALSSSDQSRLLLATRPPSRKVVSMLTCSKLC 61
           KS AS SS  +L + +D +         +  ++ D     L TRPPS   VS+ TCSKLC
Sbjct: 16  KSAASSSS-SSLSDFADNLMQDKRAAAGNLTTTYDAGSGTLVTRPPSG--VSVWTCSKLC 75

Query: 62  AICFVAGVVVGYSLKRCVNRWVSKLLRRLKDD 86
           A+ FVAGV VGY+LKR V RW SKLLRR+KDD
Sbjct: 76  AVFFVAGVFVGYTLKRRVRRWASKLLRRIKDD 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022974252.11.6e-2888.24uncharacterized protein LOC111472885 [Cucurbita maxima][more]
XP_023540347.14.5e-2889.41uncharacterized protein LOC111800746 [Cucurbita pepo subsp. pepo] >KAG6597021.1 ... [more]
XP_038893067.15.9e-2885.88uncharacterized protein LOC120081950 [Benincasa hispida][more]
XP_022956291.11.3e-2788.24uncharacterized protein LOC111458016 [Cucurbita moschata][more]
KGN51411.16.1e-2579.76hypothetical protein Csa_007923 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1I9S57.5e-2988.24uncharacterized protein LOC111472885 OS=Cucurbita maxima OX=3661 GN=LOC111472885... [more]
A0A6J1GW536.4e-2888.24uncharacterized protein LOC111458016 OS=Cucurbita moschata OX=3662 GN=LOC1114580... [more]
A0A0A0KUK23.0e-2579.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G529450 PE=4 SV=1[more]
W9RT536.6e-1765.48Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003318 PE=4 SV=1[more]
A0A540LSP81.2e-1564.29Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_024904 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G19240.19.8e-1351.09unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bac... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg006668.1Spg006668.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane