Spg006494 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006494
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase
Location	scaffold2: 47909772 .. 47910643 (+)
RNA-Seq Expression	Spg006494
Synteny	Spg006494

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTACTAGATTTTTAATGACGAACTTGCGAGATATTTTAGAAAGCCTTTTTCATTACACGTTTATGTTAAACGCTTTGATTGAGCATATTTATACGTTTAAAGTTTATCACGTGTTTTGACTTCCAGATTTAGAGTTTTAAAATTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTCCACCTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGTGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGCAAGGGTTGTATAATATCGTCCTAGAGGTCGTGGATGTATAACCCTAGTTGTATATGTTTTGGTCGTGATATCTATATCACGTTACTTTCCAAACCAGGTTATGTCAGGGCTGTACCATGTGTATGTTGAAAGATTTCCGTGGATTCCGCTGTGTGGTGTTTCATATAGAATGTTTTATATCTATGGTTAGTATGTTTATCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG

mRNA sequence

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGTGTTGTATATTGAGTCCGTTATGTCAGGGCTGTACCATGTGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG

Coding sequence (CDS)

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGTGTTGTATATTGAGTCCGTTATGTCAGGGCTGTACCATGTGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG

Protein sequence

MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLVLYIESVMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

Homology

[Close]

BLAST of Spg006494 vs. NCBI nr
Match: KAA0062407.1 (uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK26574.1 uncharacterized protein E5676_scaffold313G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 137.5 bits (345), Expect = 5.6e-29
Identity = 73/100 (73.00%), Postives = 78/100 (78.00%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLVLYIES------------ 60
           MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TWL LY ES            
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  VMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG 89
           VMSGL+ VFNVSVGSTGIVRGDDVCWLHAVFR K A  PG
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPG 100

[Close]

BLAST of Spg006494 vs. NCBI nr
Match: TYK01041.1 (uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 7.1e-24
Identity = 68/106 (64.15%), Postives = 73/106 (68.87%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLV 60
           MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS    
Sbjct: 1   MTEILSLRLHGTVCTQVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSTESSESNSS---- 60

Query: 61  LYIESVMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG 90
            +   VMSGL+ VFN+SV STGIVRGDDVCWLHAVFRAK  GGP G
Sbjct: 61  YFTNQVMSGLHLVFNISVESTGIVRGDDVCWLHAVFRAKTTGGPRG 102

[Close]

BLAST of Spg006494 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 9.3e-24
Identity = 67/106 (63.21%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 1  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLV 60
          MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWL 
Sbjct: 1  MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61 LYIESVMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG 90
          LY+E V   ++ +        GIVR DDVCWLHAVFRAK AGGPGG
Sbjct: 61 LYVEFVHVEMFWL-------AGIVREDDVCWLHAVFRAKTAGGPGG 99

[Close]

BLAST of Spg006494 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 9.3e-24
Identity = 67/106 (63.21%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 1  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLV 60
          MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWL 
Sbjct: 1  MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61 LYIESVMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG 90
          LY+E V   ++ +        GIVR DDVCWLHAVFRAK AGGPGG
Sbjct: 61 LYVEFVHVEMFWL-------AGIVREDDVCWLHAVFRAKTAGGPGG 99

[Close]

BLAST of Spg006494 vs. NCBI nr
Match: TYK11835.1 (uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 1.0e-22
Identity = 62/83 (74.70%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 19  IELPVPDTLPTSAESSRSSSSTWLVLYIES------------VMSGLYHVFNVSVGSTGI 78
           IELPVPDTLPTSAESS S+SSTWL LY ES            VMS L+ VFNVSVGSTGI
Sbjct: 96  IELPVPDTLPTSAESSGSNSSTWLELYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGI 155

Query: 79  VRGDDVCWLHAVFRAKLAGGPGG 90
           VRGDDVCWLHAVFRAK  GGPGG
Sbjct: 156 VRGDDVCWLHAVFRAKTVGGPGG 178

[Close]

BLAST of Spg006494 vs. ExPASy TrEMBL
Match: A0A5A7V638 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001830 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.7e-29
Identity = 73/100 (73.00%), Postives = 78/100 (78.00%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLVLYIES------------ 60
           MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TWL LY ES            
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  VMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG 89
           VMSGL+ VFNVSVGSTGIVRGDDVCWLHAVFR K A  PG
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPG 100

[Close]

BLAST of Spg006494 vs. ExPASy TrEMBL
Match: A0A5D3BMJ4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00470 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.4e-24
Identity = 68/106 (64.15%), Postives = 73/106 (68.87%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLV 60
           MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS    
Sbjct: 1   MTEILSLRLHGTVCTQVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSTESSESNSS---- 60

Query: 61  LYIESVMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG 90
            +   VMSGL+ VFN+SV STGIVRGDDVCWLHAVFRAK  GGP G
Sbjct: 61  YFTNQVMSGLHLVFNISVESTGIVRGDDVCWLHAVFRAKTTGGPRG 102

[Close]

BLAST of Spg006494 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.5e-24
Identity = 67/106 (63.21%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 1  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLV 60
          MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWL 
Sbjct: 1  MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61 LYIESVMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG 90
          LY+E V   ++ +        GIVR DDVCWLHAVFRAK AGGPGG
Sbjct: 61 LYVEFVHVEMFWL-------AGIVREDDVCWLHAVFRAKTAGGPGG 99

[Close]

BLAST of Spg006494 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.5e-24
Identity = 67/106 (63.21%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 1  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLV 60
          MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWL 
Sbjct: 1  MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61 LYIESVMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG 90
          LY+E V   ++ +        GIVR DDVCWLHAVFRAK AGGPGG
Sbjct: 61 LYVEFVHVEMFWL-------AGIVREDDVCWLHAVFRAKTAGGPGG 99

[Close]

BLAST of Spg006494 vs. ExPASy TrEMBL
Match: A0A5D3CJX3 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00520 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.0e-23
Identity = 62/83 (74.70%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 19  IELPVPDTLPTSAESSRSSSSTWLVLYIES------------VMSGLYHVFNVSVGSTGI 78
           IELPVPDTLPTSAESS S+SSTWL LY ES            VMS L+ VFNVSVGSTGI
Sbjct: 96  IELPVPDTLPTSAESSGSNSSTWLELYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGI 155

Query: 79  VRGDDVCWLHAVFRAKLAGGPGG 90
           VRGDDVCWLHAVFRAK  GGPGG
Sbjct: 156 VRGDDVCWLHAVFRAKTVGGPGG 178

The following BLAST results are available for this feature:

BLAST of Spg006494 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062407.1	5.6e-29	73.00	uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK...	[more]
TYK01041.1	7.1e-24	64.15	uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]	[more]
TYK27998.1	9.3e-24	63.21	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0066851.1	9.3e-24	63.21	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK11835.1	1.0e-22	74.70	uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]	[more]

BLAST of Spg006494 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg006494 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V638	2.7e-29	73.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BMJ4	3.4e-24	64.15	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DX39	4.5e-24	63.21	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5A7VMG9	4.5e-24	63.21	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5D3CJX3	5.0e-23	74.70	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of Spg006494 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006494.1	Spg006494.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016779	nucleotidyltransferase activity