Spg006425 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg006425
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPentatricopeptide repeat
Locationscaffold2: 49477025 .. 49478050 (-)
RNA-Seq ExpressionSpg006425
SyntenySpg006425
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAACGCAACTCCAACACTTTACTACAAAACCCACCTTTCAGACCAAACGAACCATCCATTTGGGCCACAAATCTCATCAAATCATACTTGGACTTGGGCCAAATCAAAGAAGCTCGTAACCTGCTTGATGAAATGCCTGAACAAGATGTGGTTGCCTGGACTGCTATGATTGTTGGCTTTACTTCTTGCAATCACTACGCTCAAGCGTGGGCTGTGTTTCGTGAGATGATGAGTAAAATTGAGCCAAATGCCTTCACTATGTCTAGTGTTCTCAAGGCTTGCAAGGTCATGGATGCTCTTTCATGTGGGACTTTGGCTCATGGTTTGGCGACGAAGCACGGTATTGATTGGTCGATGTACGTCCAGATGCACTCTTTAGAGTGTCCATTGCGGTTAGAGCTTGTGCTTCAATCGGCTCAAATTCATATGGAAAGCAAATACATGCAGCAGTCACCAAATATGTCCTCCATTTCAAGGGATGGACGACAAGAGAGAAGTGGGTAAGAGTTGGATTGAAATTAGAAATGAAGTATATAGTTTTGTGGTTGGAGATAAGATGGGCCTTCACATAGAGTGGGTGCATAAAGTTCTCAAACTACTTATTTGGCAGATGAAAGATGATCGGGATGTGACAGATTCGGATTACTTTGTTGAATATCTACAAGGAACTTGATTCCAAACATGAATCACGAACTGGAAAGACCACATGAAACAAAGTTGGAATTTTGGAATATCAATAACGTTTGCTTCCTTTCCAAAAGCATCGTTGTCGACGTTCTCGAATCAAGAAGGTGAAAATGATATAGCAAATGCGGTAAGGATGAGAGAATCCTCCTTAGAGAAGCCGTTTTCTATGCAAATTCAGCATGGAGGAGAATGGTTGAGGGCCTGAGGCAATCTTCATTGATGCAAATAACATCTCAACTTGCAGAGATGGAGACTGATGCATACCAACATAATGCTGATGCCACCTTGCTTCTCTCAAAGAGATGCTCAAAGGTACAAATGTCTTTCATATAA

mRNA sequence

ATGGATAAACGCAACTCCAACACTTTACTACAAAACCCACCTTTCAGACCAAACGAACCATCCATTTGGGCCACAAATCTCATCAAATCATACTTGGACTTGGGCCAAATCAAAGAAGCTCGTAACCTGCTTGATGAAATGCCTGAACAAGATGTGGTTGCCTGGACTGCTATGATTGTTGGCTTTACTTCTTGCAATCACTACGCTCAAGCGTGGGCTGTGTTTCGTGAGATGATGAGTAAAATTGAGCCAAATGCCTTCACTATGTCTAGTGTTCTCAAGGCTTGCAAGGTCATGGATGCTCTTTCATGTGGGACTTTGGCTCATGGTTTGGCGACGAAGCACGGTATTGATTGGTCGATGTACGTCCAGATGCACTCTTTAGAGTGTCCATTGCGGTTAGAGCTTGTGCTTCAATCGGCTCAAATTCATATGGAAAGCAAATACATGCAGCAGTCACCAAATATGTCCTCCATTTCAAGGGATGGACGACAAGAGAGAAGTGGCAAATGCGGTAAGGATGAGAGAATCCTCCTTAGAGAAGCCGTTTTCTATGCAAATTCAGCATGGAGGAGAATGGTTGAGGGCCTGAGGCAATCTTCATTGATGCAAATAACATCTCAACTTGCAGAGATGGAGACTGATGCATACCAACATAATGCTGATGCCACCTTGCTTCTCTCAAAGAGATGCTCAAAGGTACAAATGTCTTTCATATAA

Coding sequence (CDS)

ATGGATAAACGCAACTCCAACACTTTACTACAAAACCCACCTTTCAGACCAAACGAACCATCCATTTGGGCCACAAATCTCATCAAATCATACTTGGACTTGGGCCAAATCAAAGAAGCTCGTAACCTGCTTGATGAAATGCCTGAACAAGATGTGGTTGCCTGGACTGCTATGATTGTTGGCTTTACTTCTTGCAATCACTACGCTCAAGCGTGGGCTGTGTTTCGTGAGATGATGAGTAAAATTGAGCCAAATGCCTTCACTATGTCTAGTGTTCTCAAGGCTTGCAAGGTCATGGATGCTCTTTCATGTGGGACTTTGGCTCATGGTTTGGCGACGAAGCACGGTATTGATTGGTCGATGTACGTCCAGATGCACTCTTTAGAGTGTCCATTGCGGTTAGAGCTTGTGCTTCAATCGGCTCAAATTCATATGGAAAGCAAATACATGCAGCAGTCACCAAATATGTCCTCCATTTCAAGGGATGGACGACAAGAGAGAAGTGGCAAATGCGGTAAGGATGAGAGAATCCTCCTTAGAGAAGCCGTTTTCTATGCAAATTCAGCATGGAGGAGAATGGTTGAGGGCCTGAGGCAATCTTCATTGATGCAAATAACATCTCAACTTGCAGAGATGGAGACTGATGCATACCAACATAATGCTGATGCCACCTTGCTTCTCTCAAAGAGATGCTCAAAGGTACAAATGTCTTTCATATAA

Protein sequence

MDKRNSNTLLQNPPFRPNEPSIWATNLIKSYLDLGQIKEARNLLDEMPEQDVVAWTAMIVGFTSCNHYAQAWAVFREMMSKIEPNAFTMSSVLKACKVMDALSCGTLAHGLATKHGIDWSMYVQMHSLECPLRLELVLQSAQIHMESKYMQQSPNMSSISRDGRQERSGKCGKDERILLREAVFYANSAWRRMVEGLRQSSLMQITSQLAEMETDAYQHNADATLLLSKRCSKVQMSFI
Homology
[Close]
BLAST of Spg006425 vs. NCBI nr
Match: KAG6588590.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189.5 bits (480), Expect = 3.3e-44
Identity = 94/121 (77.69%), Postives = 98/121 (80.99%), Query Frame = 0 

Query: 5   NSNTLLQNPPFRPNEPSIWATNLIKSYLDLGQIKEARNLLDEMPEQDVVAWTAMIVGFTS 64
           NS TL   PPF P  PSIWATNLIKSY D G  K ARNL DEMPE+DVVAWTAMIVGFTS
Sbjct: 28  NSTTLQSTPPFTPKSPSIWATNLIKSYFDKGLSKHARNLFDEMPERDVVAWTAMIVGFTS 87

Query: 65  CNHYAQAWAVFREMM-SKIEPNAFTMSSVLKACKVMDALSCGTLAHGLATKHGIDWSMYV 124
           CN Y Q+WAVF EM+ S I PNAFT+SSVLKACK M ALSCGTLAH LATKHGID SMYV
Sbjct: 88  CNDYTQSWAVFCEMLRSDIHPNAFTLSSVLKACKGMKALSCGTLAHSLATKHGIDGSMYV 147

[Close]
BLAST of Spg006425 vs. NCBI nr
Match: XP_022157012.1 (putative pentatricopeptide repeat-containing protein At1g56570 [Momordica charantia])

HSP 1 Score: 189.5 bits (480), Expect = 3.3e-44
Identity = 96/121 (79.34%), Postives = 104/121 (85.95%), Query Frame = 0 

Query: 5   NSNTLLQ-NPPFRPNEPSIWATNLIKSYLDLGQIKEARNLLDEMPEQDVVAWTAMIVGFT 64
           NS+T +Q +PPF+P  PSIWATNLIKSY D G  KEARNL DEMPE+DVVAWT +IVGFT
Sbjct: 84  NSSTTIQPHPPFKPKGPSIWATNLIKSYFDKGLTKEARNLFDEMPERDVVAWTTLIVGFT 143

Query: 65  SCNHYAQAWAVFREMM-SKIEPNAFTMSSVLKACKVMDALSCGTLAHGLATKHGIDWSMY 124
           SCNHYAQAWAVF EMM S+IEPNAFTMSSVLKA K M+ALSCG LAHGLATK GID SMY
Sbjct: 144 SCNHYAQAWAVFCEMMRSEIEPNAFTMSSVLKASKGMEALSCGALAHGLATKLGIDRSMY 203

[Close]
BLAST of Spg006425 vs. NCBI nr
Match: KAG7022386.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189.5 bits (480), Expect = 3.3e-44
Identity = 94/121 (77.69%), Postives = 98/121 (80.99%), Query Frame = 0 

Query: 5   NSNTLLQNPPFRPNEPSIWATNLIKSYLDLGQIKEARNLLDEMPEQDVVAWTAMIVGFTS 64
           NS TL   PPF P  PSIWATNLIKSY D G  K ARNL DEMPE+DVVAWTAMIVGFTS
Sbjct: 28  NSTTLQSTPPFTPKSPSIWATNLIKSYFDKGLSKHARNLFDEMPERDVVAWTAMIVGFTS 87

Query: 65  CNHYAQAWAVFREMM-SKIEPNAFTMSSVLKACKVMDALSCGTLAHGLATKHGIDWSMYV 124
           CN Y Q+WAVF EM+ S I PNAFT+SSVLKACK M ALSCGTLAH LATKHGID SMYV
Sbjct: 88  CNDYTQSWAVFCEMLRSHIHPNAFTLSSVLKACKGMKALSCGTLAHSLATKHGIDGSMYV 147

[Close]
BLAST of Spg006425 vs. NCBI nr
Match: XP_022931578.1 (putative pentatricopeptide repeat-containing protein At1g56570 [Cucurbita moschata])

HSP 1 Score: 189.5 bits (480), Expect = 3.3e-44
Identity = 94/121 (77.69%), Postives = 98/121 (80.99%), Query Frame = 0 

Query: 5   NSNTLLQNPPFRPNEPSIWATNLIKSYLDLGQIKEARNLLDEMPEQDVVAWTAMIVGFTS 64
           NS TL   PPF P  PSIWATNLIKSY D G  K ARNL DEMPE+DVVAWTAMIVGFTS
Sbjct: 28  NSTTLQSTPPFTPKSPSIWATNLIKSYFDKGLSKHARNLFDEMPERDVVAWTAMIVGFTS 87

Query: 65  CNHYAQAWAVFREMM-SKIEPNAFTMSSVLKACKVMDALSCGTLAHGLATKHGIDWSMYV 124
           CN Y Q+WAVF EM+ S I PNAFT+SSVLKACK M ALSCGTLAH LATKHGID SMYV
Sbjct: 88  CNDYTQSWAVFCEMLRSDIHPNAFTLSSVLKACKGMKALSCGTLAHSLATKHGIDGSMYV 147

[Close]
BLAST of Spg006425 vs. NCBI nr
Match: XP_023520790.1 (putative pentatricopeptide repeat-containing protein At1g56570 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.5 bits (480), Expect = 3.3e-44
Identity = 94/121 (77.69%), Postives = 98/121 (80.99%), Query Frame = 0 

Query: 5   NSNTLLQNPPFRPNEPSIWATNLIKSYLDLGQIKEARNLLDEMPEQDVVAWTAMIVGFTS 64
           NS TL   PPF P  PSIWATNLIKSY D G  K ARNL DEMPE+DVVAWTAMIVGFTS
Sbjct: 28  NSTTLQSTPPFTPKSPSIWATNLIKSYFDKGLSKHARNLFDEMPERDVVAWTAMIVGFTS 87

Query: 65  CNHYAQAWAVFREMM-SKIEPNAFTMSSVLKACKVMDALSCGTLAHGLATKHGIDWSMYV 124
           CN Y Q+WAVF EM+ S I PNAFT+SSVLKACK M ALSCGTLAH LATKHGID SMYV
Sbjct: 88  CNDYTQSWAVFCEMLRSHIHPNAFTLSSVLKACKGMKALSCGTLAHSLATKHGIDGSMYV 147

[Close]
BLAST of Spg006425 vs. ExPASy Swiss-Prot
Match: Q9FXA9 (Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E64 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.9e-28
Identity = 59/112 (52.68%), Postives = 81/112 (72.32%), Query Frame = 0 

Query: 13  PPFRPNEPSIWATNLIKSYLDLGQIKEARNLLDEMPEQDVVAWTAMIVGFTSCNHYAQAW 72
           PP++P +  I ATNLI SY + G ++EAR+L DEMP++DVVAWTAMI G+ S N+ A+AW
Sbjct: 37  PPYKPKKHHILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAW 96

Query: 73  AVFREMMSK-IEPNAFTMSSVLKACKVMDALSCGTLAHGLATKHGIDWSMYV 124
             F EM+ +   PN FT+SSVLK+C+ M  L+ G L HG+  K G++ S+YV
Sbjct: 97  ECFHEMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYV 148

[Close]
BLAST of Spg006425 vs. ExPASy Swiss-Prot
Match: Q9MAT2 (Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H64 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.5e-15
Identity = 48/139 (34.53%), Postives = 74/139 (53.24%), Query Frame = 0 

Query: 2   DKRNSNTLLQNPPFRPNEPSIWATNLIKSYLDLGQIKEARNLLDEMPEQDVVAWTAMIVG 61
           D   + TL ++ P R      W+T LIK Y+D G++  A+ L + MPE++VV+WT +I G
Sbjct: 211 DMHMATTLFRSMPER--NSGSWST-LIKGYVDSGELNRAKQLFELMPEKNVVSWTTLING 270

Query: 62  FTSCNHYAQAWAVFREMMSK-IEPNAFTMSSVLKACKVMDALSCGTLAHGLATKHGIDW- 121
           F+    Y  A + + EM+ K ++PN +T+++VL AC    AL  G   HG    +GI   
Sbjct: 271 FSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLD 330

Query: 122 --------SMYVQMHSLEC 131
                    MY +   L+C
Sbjct: 331 RAIGTALVDMYAKCGELDC 346

[Close]
BLAST of Spg006425 vs. ExPASy Swiss-Prot
Match: Q9C9H9 (Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H70 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.2e-14
Identity = 45/123 (36.59%), Postives = 68/123 (55.28%), Query Frame = 0 

Query: 1   MDKRNSNTLLQNPPFRPNEPSIWATNLIKSYLDLGQIKEARNLLDEMPEQDVVAWTAMIV 60
           +D  N +  + + P+  ++  I A  LI  Y   G I  AR + D MPE++VV+WTA+I 
Sbjct: 76  LDGINLHHHMLSHPYCYSQNVILANFLINMYAKCGNILYARQVFDTMPERNVVSWTALIT 135

Query: 61  GFTSCNHYAQAWAVFREMMSKIEPNAFTMSSVLKACKVMDALSCGTLAHGLATKHGIDWS 120
           G+    +  + + +F  M+S   PN FT+SSVL +C+       G   HGLA K G+  S
Sbjct: 136 GYVQAGNEQEGFCLFSSMLSHCFPNEFTLSSVLTSCR----YEPGKQVHGLALKLGLHCS 194

Query: 121 MYV 124
           +YV
Sbjct: 196 IYV 194

[Close]
BLAST of Spg006425 vs. ExPASy Swiss-Prot
Match: Q683I9 (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.4e-13
Identity = 43/129 (33.33%), Postives = 69/129 (53.49%), Query Frame = 0 

Query: 26  NLIKSYLDLGQIKEARNLLDEMPEQDVVAWTAMIVGFTSCNHYAQAWAVFREMM------ 85
           +++ +Y   G I +AR L DEMPE++V++W+ +I G+  C  Y +A  +FREM       
Sbjct: 133 SVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNE 192

Query: 86  SKIEPNAFTMSSVLKACKVMDALSCGTLAHGLATKHGIDWSMYVQMHSLECPLRLELVLQ 145
           + + PN FTMS+VL AC  + AL  G   H    K+ ++               +++VL 
Sbjct: 193 AFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVE---------------IDIVLG 246

Query: 146 SAQIHMESK 149
           +A I M +K
Sbjct: 253 TALIDMYAK 246

[Close]
BLAST of Spg006425 vs. ExPASy Swiss-Prot
Match: Q56X05 (Pentatricopeptide repeat-containing protein At1g06143 OS=Arabidopsis thaliana OX=3702 GN=EMB1444 PE=2 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 3.2e-13
Identity = 68/239 (28.45%), Postives = 107/239 (44.77%), Query Frame = 0 

Query: 1   MDKRNSNTLLQNPPFRPNEPSIWATNLIKSYLDLGQIKEARNLLDEMPEQDVVAWTAMIV 60
           MD  NS   L N     NE +  +  LI  Y+ LG +++A +L ++MP +D+++WT MI 
Sbjct: 206 MDSANS---LANQMSEKNEAT--SNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIK 265

Query: 61  GFTSCNHYAQAWAVFREMMSK-IEPNAFTMSSVLKACKVMDALSCGTLAHGLATKHGIDW 120
           G++    Y +A AVF +MM + I P+  TMS+V+ AC  +  L  G   H          
Sbjct: 266 GYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVH---------- 325

Query: 121 SMYVQMHSLECPLRLELVLQSAQIHMESKYMQQSPNMSSISRDGRQERSGKCGKDERILL 180
                M++L+    L++ + SA + M S                      KCG  ER LL
Sbjct: 326 -----MYTLQNGFVLDVYIGSALVDMYS----------------------KCGSLERALL 385

Query: 181 REAVFYANS-----AWRRMVEGLRQSSLMQ-ITSQLAEMETDAYQHNADATLLLSKRCS 233
              VF+         W  ++EGL      Q      A+ME ++ + NA   + +   C+
Sbjct: 386 ---VFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACT 399

[Close]
BLAST of Spg006425 vs. ExPASy TrEMBL
Match: A0A6J1DTG1 (putative pentatricopeptide repeat-containing protein At1g56570 OS=Momordica charantia OX=3673 GN=LOC111023836 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.6e-44
Identity = 96/121 (79.34%), Postives = 104/121 (85.95%), Query Frame = 0 

Query: 5   NSNTLLQ-NPPFRPNEPSIWATNLIKSYLDLGQIKEARNLLDEMPEQDVVAWTAMIVGFT 64
           NS+T +Q +PPF+P  PSIWATNLIKSY D G  KEARNL DEMPE+DVVAWT +IVGFT
Sbjct: 84  NSSTTIQPHPPFKPKGPSIWATNLIKSYFDKGLTKEARNLFDEMPERDVVAWTTLIVGFT 143

Query: 65  SCNHYAQAWAVFREMM-SKIEPNAFTMSSVLKACKVMDALSCGTLAHGLATKHGIDWSMY 124
           SCNHYAQAWAVF EMM S+IEPNAFTMSSVLKA K M+ALSCG LAHGLATK GID SMY
Sbjct: 144 SCNHYAQAWAVFCEMMRSEIEPNAFTMSSVLKASKGMEALSCGALAHGLATKLGIDRSMY 203

[Close]
BLAST of Spg006425 vs. ExPASy TrEMBL
Match: A0A6J1EZ33 (putative pentatricopeptide repeat-containing protein At1g56570 OS=Cucurbita moschata OX=3662 GN=LOC111437751 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.6e-44
Identity = 94/121 (77.69%), Postives = 98/121 (80.99%), Query Frame = 0 

Query: 5   NSNTLLQNPPFRPNEPSIWATNLIKSYLDLGQIKEARNLLDEMPEQDVVAWTAMIVGFTS 64
           NS TL   PPF P  PSIWATNLIKSY D G  K ARNL DEMPE+DVVAWTAMIVGFTS
Sbjct: 28  NSTTLQSTPPFTPKSPSIWATNLIKSYFDKGLSKHARNLFDEMPERDVVAWTAMIVGFTS 87

Query: 65  CNHYAQAWAVFREMM-SKIEPNAFTMSSVLKACKVMDALSCGTLAHGLATKHGIDWSMYV 124
           CN Y Q+WAVF EM+ S I PNAFT+SSVLKACK M ALSCGTLAH LATKHGID SMYV
Sbjct: 88  CNDYTQSWAVFCEMLRSDIHPNAFTLSSVLKACKGMKALSCGTLAHSLATKHGIDGSMYV 147

[Close]
BLAST of Spg006425 vs. ExPASy TrEMBL
Match: A0A6J1JJV4 (putative pentatricopeptide repeat-containing protein At1g56570 OS=Cucurbita maxima OX=3661 GN=LOC111486440 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 2.1e-44
Identity = 94/121 (77.69%), Postives = 98/121 (80.99%), Query Frame = 0 

Query: 5   NSNTLLQNPPFRPNEPSIWATNLIKSYLDLGQIKEARNLLDEMPEQDVVAWTAMIVGFTS 64
           NS TL   PPF P  PSIWATNLIKSY D G  K ARNL DEMPE+DVVAWTAMIVGFTS
Sbjct: 28  NSTTLQSTPPFTPKPPSIWATNLIKSYFDRGLSKHARNLFDEMPERDVVAWTAMIVGFTS 87

Query: 65  CNHYAQAWAVFREMM-SKIEPNAFTMSSVLKACKVMDALSCGTLAHGLATKHGIDWSMYV 124
           CN Y Q+WAVF EM+ S I PNAFT+SSVLKACK M ALSCGTLAH LATKHGID SMYV
Sbjct: 88  CNDYTQSWAVFCEMLRSDIHPNAFTLSSVLKACKGMKALSCGTLAHSLATKHGIDGSMYV 147

[Close]
BLAST of Spg006425 vs. ExPASy TrEMBL
Match: A0A0A0LW37 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G555630 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 4.4e-42
Identity = 86/121 (71.07%), Postives = 100/121 (82.64%), Query Frame = 0 

Query: 5   NSNTLLQNPPFRPNEPSIWATNLIKSYLDLGQIKEARNLLDEMPEQDVVAWTAMIVGFTS 64
           +++TL  NPPF P  PS+WATNLIKSY D G  +EA NL +E+PE+DVV WTAMIVGFTS
Sbjct: 27  SNSTLQSNPPFTPEGPSVWATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTS 86

Query: 65  CNHYAQAWAVFREMM-SKIEPNAFTMSSVLKACKVMDALSCGTLAHGLATKHGIDWSMYV 124
           CNHY QAW +F EM+ S+++PNAFTMSSVLKACK M ALSCG LAH LATKHGID S+YV
Sbjct: 87  CNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYV 146

[Close]
BLAST of Spg006425 vs. ExPASy TrEMBL
Match: A0A1S3BQ30 (putative pentatricopeptide repeat-containing protein At1g56570 OS=Cucumis melo OX=3656 GN=LOC103492105 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-40
Identity = 85/121 (70.25%), Postives = 98/121 (80.99%), Query Frame = 0 

Query: 5   NSNTLLQNPPFRPNEPSIWATNLIKSYLDLGQIKEARNLLDEMPEQDVVAWTAMIVGFTS 64
           +++TL  NPPF P  PS WATNLIKSY D G  +EA NL +E+PE+DVV WTAMIVGFTS
Sbjct: 27  SNSTLQSNPPFTPKGPSFWATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTS 86

Query: 65  CNHYAQAWAVFREMM-SKIEPNAFTMSSVLKACKVMDALSCGTLAHGLATKHGIDWSMYV 124
           CNHY QAW +F EM+ S+++PNAFTMSSVLKACK M ALSCG LAH LATK GID S+YV
Sbjct: 87  CNHYPQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKLGIDRSVYV 146

[Close]
BLAST of Spg006425 vs. TAIR 10
Match: AT1G56570.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 125.9 bits (315), Expect = 4.2e-29
Identity = 59/112 (52.68%), Postives = 81/112 (72.32%), Query Frame = 0 

Query: 13  PPFRPNEPSIWATNLIKSYLDLGQIKEARNLLDEMPEQDVVAWTAMIVGFTSCNHYAQAW 72
           PP++P +  I ATNLI SY + G ++EAR+L DEMP++DVVAWTAMI G+ S N+ A+AW
Sbjct: 37  PPYKPKKHHILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAW 96

Query: 73  AVFREMMSK-IEPNAFTMSSVLKACKVMDALSCGTLAHGLATKHGIDWSMYV 124
             F EM+ +   PN FT+SSVLK+C+ M  L+ G L HG+  K G++ S+YV
Sbjct: 97  ECFHEMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYV 148

[Close]
BLAST of Spg006425 vs. TAIR 10
Match: AT1G04840.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 82.4 bits (202), Expect = 5.4e-16
Identity = 48/139 (34.53%), Postives = 74/139 (53.24%), Query Frame = 0 

Query: 2   DKRNSNTLLQNPPFRPNEPSIWATNLIKSYLDLGQIKEARNLLDEMPEQDVVAWTAMIVG 61
           D   + TL ++ P R      W+T LIK Y+D G++  A+ L + MPE++VV+WT +I G
Sbjct: 211 DMHMATTLFRSMPER--NSGSWST-LIKGYVDSGELNRAKQLFELMPEKNVVSWTTLING 270

Query: 62  FTSCNHYAQAWAVFREMMSK-IEPNAFTMSSVLKACKVMDALSCGTLAHGLATKHGIDW- 121
           F+    Y  A + + EM+ K ++PN +T+++VL AC    AL  G   HG    +GI   
Sbjct: 271 FSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLD 330

Query: 122 --------SMYVQMHSLEC 131
                    MY +   L+C
Sbjct: 331 RAIGTALVDMYAKCGELDC 346

[Close]
BLAST of Spg006425 vs. TAIR 10
Match: AT1G71420.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-15
Identity = 45/123 (36.59%), Postives = 68/123 (55.28%), Query Frame = 0 

Query: 1   MDKRNSNTLLQNPPFRPNEPSIWATNLIKSYLDLGQIKEARNLLDEMPEQDVVAWTAMIV 60
           +D  N +  + + P+  ++  I A  LI  Y   G I  AR + D MPE++VV+WTA+I 
Sbjct: 76  LDGINLHHHMLSHPYCYSQNVILANFLINMYAKCGNILYARQVFDTMPERNVVSWTALIT 135

Query: 61  GFTSCNHYAQAWAVFREMMSKIEPNAFTMSSVLKACKVMDALSCGTLAHGLATKHGIDWS 120
           G+    +  + + +F  M+S   PN FT+SSVL +C+       G   HGLA K G+  S
Sbjct: 136 GYVQAGNEQEGFCLFSSMLSHCFPNEFTLSSVLTSCR----YEPGKQVHGLALKLGLHCS 194

Query: 121 MYV 124
           +YV
Sbjct: 196 IYV 194

[Close]
BLAST of Spg006425 vs. TAIR 10
Match: AT3G62890.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-14
Identity = 43/129 (33.33%), Postives = 69/129 (53.49%), Query Frame = 0 

Query: 26  NLIKSYLDLGQIKEARNLLDEMPEQDVVAWTAMIVGFTSCNHYAQAWAVFREMM------ 85
           +++ +Y   G I +AR L DEMPE++V++W+ +I G+  C  Y +A  +FREM       
Sbjct: 133 SVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNE 192

Query: 86  SKIEPNAFTMSSVLKACKVMDALSCGTLAHGLATKHGIDWSMYVQMHSLECPLRLELVLQ 145
           + + PN FTMS+VL AC  + AL  G   H    K+ ++               +++VL 
Sbjct: 193 AFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVE---------------IDIVLG 246

Query: 146 SAQIHMESK 149
           +A I M +K
Sbjct: 253 TALIDMYAK 246

[Close]
BLAST of Spg006425 vs. TAIR 10
Match: AT1G06150.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-14
Identity = 68/239 (28.45%), Postives = 107/239 (44.77%), Query Frame = 0 

Query: 1    MDKRNSNTLLQNPPFRPNEPSIWATNLIKSYLDLGQIKEARNLLDEMPEQDVVAWTAMIV 60
            MD  NS   L N     NE +  +  LI  Y+ LG +++A +L ++MP +D+++WT MI 
Sbjct: 951  MDSANS---LANQMSEKNEAT--SNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIK 1010

Query: 61   GFTSCNHYAQAWAVFREMMSK-IEPNAFTMSSVLKACKVMDALSCGTLAHGLATKHGIDW 120
            G++    Y +A AVF +MM + I P+  TMS+V+ AC  +  L  G   H          
Sbjct: 1011 GYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVH---------- 1070

Query: 121  SMYVQMHSLECPLRLELVLQSAQIHMESKYMQQSPNMSSISRDGRQERSGKCGKDERILL 180
                 M++L+    L++ + SA + M S                      KCG  ER LL
Sbjct: 1071 -----MYTLQNGFVLDVYIGSALVDMYS----------------------KCGSLERALL 1130

Query: 181  REAVFYANS-----AWRRMVEGLRQSSLMQ-ITSQLAEMETDAYQHNADATLLLSKRCS 233
               VF+         W  ++EGL      Q      A+ME ++ + NA   + +   C+
Sbjct: 1131 ---VFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACT 1144

The following BLAST results are available for this feature:
BLAST of Spg006425 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6588590.13.3e-4477.69putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros... [more]
XP_022157012.13.3e-4479.34putative pentatricopeptide repeat-containing protein At1g56570 [Momordica charan... [more]
KAG7022386.13.3e-4477.69putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros... [more]
XP_022931578.13.3e-4477.69putative pentatricopeptide repeat-containing protein At1g56570 [Cucurbita moscha... [more]
XP_023520790.13.3e-4477.69putative pentatricopeptide repeat-containing protein At1g56570 [Cucurbita pepo s... [more]
BLAST of Spg006425 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FXA95.9e-2852.68Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis th... [more]
Q9MAT27.5e-1534.53Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana OX... [more]
Q9C9H92.2e-1436.59Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana OX... [more]
Q683I92.4e-1333.33Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana OX... [more]
Q56X053.2e-1328.45Pentatricopeptide repeat-containing protein At1g06143 OS=Arabidopsis thaliana OX... [more]
BLAST of Spg006425 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DTG11.6e-4479.34putative pentatricopeptide repeat-containing protein At1g56570 OS=Momordica char... [more]
A0A6J1EZ331.6e-4477.69putative pentatricopeptide repeat-containing protein At1g56570 OS=Cucurbita mosc... [more]
A0A6J1JJV42.1e-4477.69putative pentatricopeptide repeat-containing protein At1g56570 OS=Cucurbita maxi... [more]
A0A0A0LW374.4e-4271.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G555630 PE=4 SV=1[more]
A0A1S3BQ301.4e-4070.25putative pentatricopeptide repeat-containing protein At1g56570 OS=Cucumis melo O... [more]
BLAST of Spg006425 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G56570.14.2e-2952.68Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G04840.15.4e-1634.53Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G71420.11.6e-1536.59Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G62890.11.7e-1433.33Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G06150.12.3e-1428.45basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 25..50
e-value: 0.0046
score: 17.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 27..53
e-value: 0.0021
score: 16.1
coord: 53..81
e-value: 2.6E-4
score: 18.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 51..96
e-value: 1.2E-10
score: 41.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 51..81
score: 9.174665
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 7..117
e-value: 5.7E-19
score: 70.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..171
NoneNo IPR availablePANTHERPTHR47925:SF28BNAA09G15330D PROTEINcoord: 12..125
NoneNo IPR availablePANTHERPTHR47925OS01G0913400 PROTEIN-RELATEDcoord: 12..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg006425.1Spg006425.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009451 RNA modification
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding