Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTTGCCCCCATTCTCCCCTTCCGATCTCCTACTTTGGGCACCCCTCTTGGGGATAAACCCTCAAATGCTTCTTTTTGGTCCCCAATTATTGATAAAATTCAGCGTAAAGCTTGAAAATTGGCGTTTCTCATATATTTCGAAGGGCGGTCGTTTAACTCTTATTCAAGCAACTCTGAGTAGTATCTCAACGTACATGCTGTCAGTTTTTAAGGTCCCTCAGTCTATTTGTAAGAAGGTGGATAAGCTTATCAGAACTTTCCTTTGGTGTGGTACTAGCGTTGATAACAACCTCCGGCCTTTGATTAGTTGGGATGTGGTGACTGCCGCAAAAGACTCAGGGGGCTTTGATATTTTCAAAACCAAAGTTTCAAATAATGCCCTTCAAATCAAATGGTTGTGGAGGTACTATCAGGAGGATCAACCCTTATGGAAACGCCTTGTTAATGCCAAATATACTATCCCACAAGCTGGAGCTCTCCCAACGCAGTCCCGTTTCTCCAATTCTAGGGCCCCTTGGTTTTCTATTGTCAAGCATGCTCATCATTTCAAGCAGTTCACTAAATGGGGCCTCAGAAATGGAAATAAAATTTTCTTTTGGCAAGATTCTTGGTCAAATAATCTAGGCCCGTTAAACCTGCTTCATCCTCGTTTCTTTGCGTTTTCCAGTAGGCAGGATATGAAAGTCTTTGAGGCTTGGGTGTCTTCTTCATATTCTTGGAATATTTTCCCTCGTAGACCTCTTCTGGACAGAGAGGTTAGCCTTTGGGACGAGTTAATCCCCTCACTGCCCAGACCCTCTTCTTCTAGAGGGCCTTTCTCAACGGCTTTAGCTCACCTCTCTTTCTGGGATAGCTCTTCTATCATGCGCTTACAGGTGGACCTTAAAGTCCTCACAAACCTTTGGCGAGCCAGAATCCTTAAGAAACCTTTGGTGAGCCAGAATCCCTAAGAAGTGTAAATTTTTTATGTGGTTTATGCATCACCCAAGGTTACACACGGCAGATAGGTTGCAAAGAATTTTCAAGCAATCAACTTTGAGCCCCGGTTGTTGTTCCCTTTGTCATGTTGCCTCAGAAATCCTTGGATCATATTTTCGTTCATTGCCGGTTGGCCTCAACCATTTGGACTATAATTCTTCAAGCCTCTGGTGCTCGTTCTCCAATCCCTTCTCAAGTTGACAAGCTTTGTGAGGAGGCTTTTGCTTTCAAGGCTGGCTCTCAAAGGAGCTCTCTCATCCAAGGTCTGTTTGTGGCTTCTTTTTGGGTTATTTGGAATGAGCAGAATAGTCGTATCTTCAAAAATCAATCTCACTCTCCTTATCAGATTTGGGAGGATATCCTTGCTTTAGCGGTTTTTGGGACCTCTTCTTCTACGTTTTTTATCAACTATGATGCGCCTTCCATTGCCCTTAATTAG
mRNA sequence
ATGGGGTTGCCCCCATTCTCCCCTTCCGATCTCCTACTTTGGGCACCCCTCTTGGGGATAAACCCTCAAATGCTTCTTTTTGGTCCCCAATTATTGATAAAATTCAGCGTAAAGCTTGAAAATTGGCGTTTCTCATATATTTCGAAGGGCGGTCGTTTAACTCTTATTCAAGCAACTCTGAGTAGTATCTCAACGTACATGCTGTCAGTTTTTAAGGTCCCTCAGTCTATTTGTAAGAAGGTGGATAAGCTTATCAGAACTTTCCTTTGGTGTGGTACTAGCGTTGATAACAACCTCCGGCCTTTGATTAGTTGGGATGTGGTGACTGCCGCAAAAGACTCAGGGGGCTTTGATATTTTCAAAACCAAAGTTTCAAATAATGCCCTTCAAATCAAATGGTTGTGGAGGTACTATCAGGAGGATCAACCCTTATGGAAACGCCTTGTTAATGCCAAATATACTATCCCACAAGCTGGAGCTCTCCCAACGCAGTCCCGTTTCTCCAATTCTAGGGCCCCTTGGTTTTCTATTGTCAAGCATGCTCATCATTTCAAGCAGTTCACTAAATGGGGCCTCAGAAATGGAAATAAAATTTTCTTTTGGCAAGATTCTTGGTCAAATAATCTAGGCCCGTTAAACCTGCTTCATCCTCGTTTCTTTGCGTTTTCCAGTAGGCAGGATATGAAAGTCTTTGAGGCTTGGGTGTCTTCTTCATATTCTTGGAATATTTTCCCTCGTAGACCTCTTCTGGACAGAGAGGTTAGCCTTTGGGACGAGTTAATCCCCTCACTGCCCAGACCCTCTTCTTCTAGAGGGCCTTTCTCAACGGCTTTAGCTCACCTCTCTTTCTGGGATAGCTCTTCTATCATGCGCTTACAGGTGGACCTTAAAGTCCTCACAAACCTTTGGCGAGCCAGAATCCTTAAGAAACCTTTGAAATCCTTGGATCATATTTTCGTTCATTGCCGGTTGGCCTCAACCATTTGGACTATAATTCTTCAAGCCTCTGGTGCTCGTTCTCCAATCCCTTCTCAAGTTGACAAGCTTTGTGAGGAGGCTTTTGCTTTCAAGGCTGGCTCTCAAAGGAGCTCTCTCATCCAAGGTCTGTTTGTGGCTTCTTTTTGGGTTATTTGGAATGAGCAGAATAGTCGTATCTTCAAAAATCAATCTCACTCTCCTTATCAGATTTGGGAGGATATCCTTGCTTTAGCGGTTTTTGGGACCTCTTCTTCTACGTTTTTTATCAACTATGATGCGCCTTCCATTGCCCTTAATTAG
Coding sequence (CDS)
ATGGGGTTGCCCCCATTCTCCCCTTCCGATCTCCTACTTTGGGCACCCCTCTTGGGGATAAACCCTCAAATGCTTCTTTTTGGTCCCCAATTATTGATAAAATTCAGCGTAAAGCTTGAAAATTGGCGTTTCTCATATATTTCGAAGGGCGGTCGTTTAACTCTTATTCAAGCAACTCTGAGTAGTATCTCAACGTACATGCTGTCAGTTTTTAAGGTCCCTCAGTCTATTTGTAAGAAGGTGGATAAGCTTATCAGAACTTTCCTTTGGTGTGGTACTAGCGTTGATAACAACCTCCGGCCTTTGATTAGTTGGGATGTGGTGACTGCCGCAAAAGACTCAGGGGGCTTTGATATTTTCAAAACCAAAGTTTCAAATAATGCCCTTCAAATCAAATGGTTGTGGAGGTACTATCAGGAGGATCAACCCTTATGGAAACGCCTTGTTAATGCCAAATATACTATCCCACAAGCTGGAGCTCTCCCAACGCAGTCCCGTTTCTCCAATTCTAGGGCCCCTTGGTTTTCTATTGTCAAGCATGCTCATCATTTCAAGCAGTTCACTAAATGGGGCCTCAGAAATGGAAATAAAATTTTCTTTTGGCAAGATTCTTGGTCAAATAATCTAGGCCCGTTAAACCTGCTTCATCCTCGTTTCTTTGCGTTTTCCAGTAGGCAGGATATGAAAGTCTTTGAGGCTTGGGTGTCTTCTTCATATTCTTGGAATATTTTCCCTCGTAGACCTCTTCTGGACAGAGAGGTTAGCCTTTGGGACGAGTTAATCCCCTCACTGCCCAGACCCTCTTCTTCTAGAGGGCCTTTCTCAACGGCTTTAGCTCACCTCTCTTTCTGGGATAGCTCTTCTATCATGCGCTTACAGGTGGACCTTAAAGTCCTCACAAACCTTTGGCGAGCCAGAATCCTTAAGAAACCTTTGAAATCCTTGGATCATATTTTCGTTCATTGCCGGTTGGCCTCAACCATTTGGACTATAATTCTTCAAGCCTCTGGTGCTCGTTCTCCAATCCCTTCTCAAGTTGACAAGCTTTGTGAGGAGGCTTTTGCTTTCAAGGCTGGCTCTCAAAGGAGCTCTCTCATCCAAGGTCTGTTTGTGGCTTCTTTTTGGGTTATTTGGAATGAGCAGAATAGTCGTATCTTCAAAAATCAATCTCACTCTCCTTATCAGATTTGGGAGGATATCCTTGCTTTAGCGGTTTTTGGGACCTCTTCTTCTACGTTTTTTATCAACTATGATGCGCCTTCCATTGCCCTTAATTAG
Protein sequence
MGLPPFSPSDLLLWAPLLGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKWLWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRGPFSTALAHLSFWDSSSIMRLQVDLKVLTNLWRARILKKPLKSLDHIFVHCRLASTIWTIILQASGARSPIPSQVDKLCEEAFAFKAGSQRSSLIQGLFVASFWVIWNEQNSRIFKNQSHSPYQIWEDILALAVFGTSSSTFFINYDAPSIALN
Homology
BLAST of Spg006324 vs. NCBI nr
Match:
KAA0040037.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 262.7 bits (670), Expect = 5.5e-66
Identity = 150/443 (33.86%), Postives = 227/443 (51.24%), Query Frame = 0
Query: 34 KFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGT 93
K + KL +W++S +SKGG++TLI+++L+S+ TY LS+FK P S CK ++K R FLW
Sbjct: 101 KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNP 160
Query: 94 SVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKWLWRYYQEDQPLWKRLVNAKY 153
+ L L++W +T+ K+ GG I + K +N AL KWLWRY ED PLWK+++NAKY
Sbjct: 161 PETHKLH-LVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKY 220
Query: 154 TIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLN 213
G +P S+SR+PWFSI K F++ W ++NG FW W N PL+
Sbjct: 221 RSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVSWKIKNGRSFSFWHSHWHQN-SPLS 280
Query: 214 LLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLWDELIPSL--------- 273
+PR FA S+ +D + + W ++ W++ PRR L + E LW EL SL
Sbjct: 281 FHYPRLFALSTNKDSSIRDMWNNTLMDWDLNPRRQLREWEYPLWAELKNSLNASFCENGK 340
Query: 274 PRPS---SSRGPFSTALAHLSFWD-SSSIMRLQVDLKVLTNLWRARILKKPL-------- 333
P+ +S G ++ A + S++ LQ NLW+ I KK +
Sbjct: 341 DSPTWTLNSNGLYTVASVKKALQQPDQSLLDLQ-SQNTFKNLWKTSIPKKCIFFIWTLLY 400
Query: 334 ------------------------------KSLDHIFVHCRLASTIWTIILQASGARSPI 393
+ H+F+ C +A +IW +I +
Sbjct: 401 DSVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRLISSHLNSNVNC 460
Query: 394 PSQVDKLCEEAFAFKAGSQRSSLIQGLFVASFWVIWNEQNSRIFKNQSHSPYQIWEDILA 426
S D LC ++K ++++ ++ + ++ W IW E+N+RIF + + +IWEDI A
Sbjct: 461 LSPKD-LCITMCSWKQKTKKNVILYNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKA 520
BLAST of Spg006324 vs. NCBI nr
Match:
TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 257.7 bits (657), Expect = 1.8e-64
Identity = 150/443 (33.86%), Postives = 231/443 (52.14%), Query Frame = 0
Query: 34 KFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGT 93
K + KL +W++S +SKGG++TLI+++L+S+ TY LS+FK P S CK ++K R FLW
Sbjct: 677 KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNP 736
Query: 94 SVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKWLWRYYQEDQPLWKRLVNAKY 153
+ L L++W +T++K+ GG I + K +N AL KWLWRY ED PLWK+++NAKY
Sbjct: 737 PETHKLH-LVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKY 796
Query: 154 TIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLN 213
G +P S+SR+PWFSI K F++ W ++NG FW W N PL+
Sbjct: 797 RSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVSWKIKNGRSFSFWHGHWHQN-SPLS 856
Query: 214 LLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRGP 273
+PR +A S+ ++ + + W ++ W++ PRR L + E+ LW EL S+ G
Sbjct: 857 SHYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLREWELPLWAELKNSINASFCENGK 916
Query: 274 FST--ALAHLSFWDSSSIMR-LQ------VDLK---VLTNLWRARILKKPL--------- 333
S AL + +S+ + LQ +DL+ NLW+ I KK +
Sbjct: 917 DSPMWALNSNGLYTVASVKKALQQPEQSLLDLQSQNTFKNLWKTSIPKKCIFFIWTLLYD 976
Query: 334 -----------------------------KSLDHIFVHCRLASTIWTIILQASGARSPIP 393
+ H+F+ C +A +IW I +S S +
Sbjct: 977 SVNTAEQLMKRLPKLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRTI--SSHLNSNVN 1036
Query: 394 SQVDK-LCEEAFAFKAGSQRSSLIQGLFVASFWVIWNEQNSRIFKNQSHSPYQIWEDILA 426
K LC ++K ++++ ++ + ++ W IW E+N+RIF + + +IWEDI A
Sbjct: 1037 CLSPKELCITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKA 1096
BLAST of Spg006324 vs. NCBI nr
Match:
KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 257.3 bits (656), Expect = 2.3e-64
Identity = 150/457 (32.82%), Postives = 221/457 (48.36%), Query Frame = 0
Query: 18 LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
LG P F +L K KL +W++S +SKGGR+TLI +TL S+ Y LSVFKVP+ I
Sbjct: 578 LGGKPSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGI 637
Query: 78 CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKWLWRY 137
+K++ R FLW GTS +N+ LI W+ V + K+ GG I +N AL KWLW++
Sbjct: 638 AQKIEAYWRNFLWNGTSNGHNI-SLIRWNQVVSPKEKGGLGIHSVHSTNFALLCKWLWKF 697
Query: 138 YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
E +PLWKRL+ +KY + G P++ ++S++ +PW ++ F + W + +G
Sbjct: 698 LTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGED 757
Query: 198 IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
I FW D+W+ N PL+L+ PR FA S+ + V + W S WNI RPL D E +LW
Sbjct: 758 ISFWLDNWNGN-SPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLW 817
Query: 258 DELIPSLPRPSSSRGPFST--ALAHLSFWDSSSIMR---------LQVDLKVLTNLWRAR 317
+ SLP P RGP L + +D++SI + + LW+
Sbjct: 818 HNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVD 877
Query: 318 ILK--------------------------------------KPLKSLDHIFVHCRLASTI 377
K K + ++H+F+HC + +
Sbjct: 878 FPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQL 937
Query: 378 WTIILQASGARSPIPSQVDKLCEEAFAFKAGSQRSSLIQGLFVASFWVIWNEQNSRIFKN 426
W+ QA + P+ V L + + +Q+ + W IW E+N+RIFK
Sbjct: 938 WS-KAQALLKWNSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIFKQ 997
BLAST of Spg006324 vs. NCBI nr
Match:
XP_016902461.1 (PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo])
HSP 1 Score: 256.1 bits (653), Expect = 5.2e-64
Identity = 150/447 (33.56%), Postives = 230/447 (51.45%), Query Frame = 0
Query: 34 KFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGT 93
K + KL +W++S +SKGG++TLI+++L+S+ TY LS+FKVP S CK ++K R FLW
Sbjct: 614 KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKVPVSTCKNIEKTWRNFLWKNP 673
Query: 94 SVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKWLWRYYQEDQPLWKRLVNAKY 153
+ L L++W +T++K+ GG I + K +N AL KWLWRY ED PLWK+++NAKY
Sbjct: 674 PETHKLH-LVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKY 733
Query: 154 TIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLN 213
G +P S+SR+PWFSI K F++ W ++NG FW W N PL+
Sbjct: 734 RSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVSWKIKNGRSFSFWHSHWHQN-SPLS 793
Query: 214 LLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRG- 273
+PR +A S+ ++ + + W ++ W++ PRR L + E LW EL SL G
Sbjct: 794 SHYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLREWEHPLWAELKNSLNASFCENGN 853
Query: 274 --PFSTALAHLSFWDSSSIMRLQ------VDLK---VLTNLWRARILKKPL--------- 333
P T ++ + +S LQ +D + NLW+ I KK +
Sbjct: 854 DSPMWTLNSNGLYTVASVKKTLQQPEQNLLDFQSQNTFKNLWKTSIPKKCIFFIWTLLYD 913
Query: 334 -----------------------------KSLDHIFVHCRLASTIWTIILQASGARSPIP 393
+ H+F+ C +A +IW I S +
Sbjct: 914 SVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRSI------SSHLS 973
Query: 394 SQVD-----KLCEEAFAFKAGSQRSSLIQGLFVASFWVIWNEQNSRIFKNQSHSPYQIWE 426
S V+ +LC ++K ++++ ++ + ++ W IW E+N+RIF + + +IWE
Sbjct: 974 SNVNCLSPKELCITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWE 1033
BLAST of Spg006324 vs. NCBI nr
Match:
TYK00493.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 255.8 bits (652), Expect = 6.7e-64
Identity = 158/456 (34.65%), Postives = 230/456 (50.44%), Query Frame = 0
Query: 18 LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
LG NP+ LF + + KL NW++++ISKGGRLTLI++TLSS+ Y LSVF+ P S
Sbjct: 1329 LGGNPKSNLFWRNIEDRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYKLSVFQAPSST 1388
Query: 78 CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKWLWRY 137
K ++KL R FLW G S LI+W +VT K+ GG I + +V+N AL KWLWRY
Sbjct: 1389 YKNIEKLWRNFLWKG-SCGLKGSHLINWSIVTKPKEEGGLGISRLQVTNQALLSKWLWRY 1448
Query: 138 YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
Y E LW+RL++ KY G LP+ S+S+APW SI+ + FK W L NG++
Sbjct: 1449 YSEPNSLWRRLIHIKYKGKHPGDLPSNISSSSSKAPWRSIINNIDWFKSNQGWDLNNGDQ 1508
Query: 198 IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
I FW +WS G L+ +PR FA S ++ + + W S++ W I RR L DRE+S W
Sbjct: 1509 ISFWYSNWSPE-GCLSTAYPRLFALSMDKESSIKDVWNSNNNQWEITFRRKLNDRELSTW 1568
Query: 258 DELIPSLPRPSSSRGP------------FSTALAH--LSFWDSSSIMRLQVDLKVLTNLW 317
+++ +LP ++RGP FS A A +S S+ +V K+L +W
Sbjct: 1569 QKILENLPILRTNRGPSKPTWIPDSKKFFSIASAKSCISHQPDRSVANPRV--KLLNLIW 1628
Query: 318 RARI--------------------------------LKKPLKSLDHIFVHCRLASTIWTI 377
+ + KK ++ H+F+HC L +W+
Sbjct: 1629 KTHVPMKIKFFMWCLVQRKLNTMEVXTLLQPNWCVLCKKKSETGAHLFLHCDLVKPLWS- 1688
Query: 378 ILQASGARSPIPSQVDKLCEEAFAFKAGSQRSSLIQGLFVASFWVIWNEQNSRIFKNQSH 426
+L S +PI + + + + ++ +A W IW E+N+RIF S+
Sbjct: 1689 LLHRSLNFAPISDDFEAMFSFFLSLNQSLPKHKVVFCGMIAILWRIWTERNNRIFDTLSY 1748
BLAST of Spg006324 vs. ExPASy Swiss-Prot
Match:
P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)
HSP 1 Score: 97.8 bits (242), Expect = 3.1e-19
Identity = 59/187 (31.55%), Postives = 89/187 (47.59%), Query Frame = 0
Query: 30 QLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFL 89
++L + S ++ WR +S GRLTL +A LSS+ + +S +PQSI ++D+L RTFL
Sbjct: 15 EILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFL 74
Query: 90 WCGTSVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKWLWRYYQEDQPLWKRLV 149
W G++ + + L+ W V + K GG + K N AL K WR QE LW ++
Sbjct: 75 W-GSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVL 134
Query: 150 NAKYTIPQAGALPTQSRFSNSRAPWFS-----------IVKHAHHFKQFTKWGLRNGNKI 206
KY + + SR+ + W S +V H W +G +I
Sbjct: 135 QKKYHVGEI----RDSRWLIPKGSWSSTWRSIAIGLRDVVSHG------VGWIPGDGQQI 190
BLAST of Spg006324 vs. ExPASy TrEMBL
Match:
A0A5A7TES3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00040 PE=4 SV=1)
HSP 1 Score: 262.7 bits (670), Expect = 2.7e-66
Identity = 150/443 (33.86%), Postives = 227/443 (51.24%), Query Frame = 0
Query: 34 KFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGT 93
K + KL +W++S +SKGG++TLI+++L+S+ TY LS+FK P S CK ++K R FLW
Sbjct: 101 KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNP 160
Query: 94 SVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKWLWRYYQEDQPLWKRLVNAKY 153
+ L L++W +T+ K+ GG I + K +N AL KWLWRY ED PLWK+++NAKY
Sbjct: 161 PETHKLH-LVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKY 220
Query: 154 TIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLN 213
G +P S+SR+PWFSI K F++ W ++NG FW W N PL+
Sbjct: 221 RSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVSWKIKNGRSFSFWHSHWHQN-SPLS 280
Query: 214 LLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLWDELIPSL--------- 273
+PR FA S+ +D + + W ++ W++ PRR L + E LW EL SL
Sbjct: 281 FHYPRLFALSTNKDSSIRDMWNNTLMDWDLNPRRQLREWEYPLWAELKNSLNASFCENGK 340
Query: 274 PRPS---SSRGPFSTALAHLSFWD-SSSIMRLQVDLKVLTNLWRARILKKPL-------- 333
P+ +S G ++ A + S++ LQ NLW+ I KK +
Sbjct: 341 DSPTWTLNSNGLYTVASVKKALQQPDQSLLDLQ-SQNTFKNLWKTSIPKKCIFFIWTLLY 400
Query: 334 ------------------------------KSLDHIFVHCRLASTIWTIILQASGARSPI 393
+ H+F+ C +A +IW +I +
Sbjct: 401 DSVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRLISSHLNSNVNC 460
Query: 394 PSQVDKLCEEAFAFKAGSQRSSLIQGLFVASFWVIWNEQNSRIFKNQSHSPYQIWEDILA 426
S D LC ++K ++++ ++ + ++ W IW E+N+RIF + + +IWEDI A
Sbjct: 461 LSPKD-LCITMCSWKQKTKKNVILYNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKA 520
BLAST of Spg006324 vs. ExPASy TrEMBL
Match:
A0A5D3C4J1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00790 PE=4 SV=1)
HSP 1 Score: 257.7 bits (657), Expect = 8.6e-65
Identity = 150/443 (33.86%), Postives = 231/443 (52.14%), Query Frame = 0
Query: 34 KFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGT 93
K + KL +W++S +SKGG++TLI+++L+S+ TY LS+FK P S CK ++K R FLW
Sbjct: 677 KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNP 736
Query: 94 SVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKWLWRYYQEDQPLWKRLVNAKY 153
+ L L++W +T++K+ GG I + K +N AL KWLWRY ED PLWK+++NAKY
Sbjct: 737 PETHKLH-LVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKY 796
Query: 154 TIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLN 213
G +P S+SR+PWFSI K F++ W ++NG FW W N PL+
Sbjct: 797 RSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVSWKIKNGRSFSFWHGHWHQN-SPLS 856
Query: 214 LLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRGP 273
+PR +A S+ ++ + + W ++ W++ PRR L + E+ LW EL S+ G
Sbjct: 857 SHYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLREWELPLWAELKNSINASFCENGK 916
Query: 274 FST--ALAHLSFWDSSSIMR-LQ------VDLK---VLTNLWRARILKKPL--------- 333
S AL + +S+ + LQ +DL+ NLW+ I KK +
Sbjct: 917 DSPMWALNSNGLYTVASVKKALQQPEQSLLDLQSQNTFKNLWKTSIPKKCIFFIWTLLYD 976
Query: 334 -----------------------------KSLDHIFVHCRLASTIWTIILQASGARSPIP 393
+ H+F+ C +A +IW I +S S +
Sbjct: 977 SVNTAEQLMKRLPKLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRTI--SSHLNSNVN 1036
Query: 394 SQVDK-LCEEAFAFKAGSQRSSLIQGLFVASFWVIWNEQNSRIFKNQSHSPYQIWEDILA 426
K LC ++K ++++ ++ + ++ W IW E+N+RIF + + +IWEDI A
Sbjct: 1037 CLSPKELCITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKA 1096
BLAST of Spg006324 vs. ExPASy TrEMBL
Match:
A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)
HSP 1 Score: 257.3 bits (656), Expect = 1.1e-64
Identity = 150/457 (32.82%), Postives = 221/457 (48.36%), Query Frame = 0
Query: 18 LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
LG P F +L K KL +W++S +SKGGR+TLI +TL S+ Y LSVFKVP+ I
Sbjct: 578 LGGKPSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGI 637
Query: 78 CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKWLWRY 137
+K++ R FLW GTS +N+ LI W+ V + K+ GG I +N AL KWLW++
Sbjct: 638 AQKIEAYWRNFLWNGTSNGHNI-SLIRWNQVVSPKEKGGLGIHSVHSTNFALLCKWLWKF 697
Query: 138 YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
E +PLWKRL+ +KY + G P++ ++S++ +PW ++ F + W + +G
Sbjct: 698 LTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGED 757
Query: 198 IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
I FW D+W+ N PL+L+ PR FA S+ + V + W S WNI RPL D E +LW
Sbjct: 758 ISFWLDNWNGN-SPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLW 817
Query: 258 DELIPSLPRPSSSRGPFST--ALAHLSFWDSSSIMR---------LQVDLKVLTNLWRAR 317
+ SLP P RGP L + +D++SI + + LW+
Sbjct: 818 HNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVD 877
Query: 318 ILK--------------------------------------KPLKSLDHIFVHCRLASTI 377
K K + ++H+F+HC + +
Sbjct: 878 FPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQL 937
Query: 378 WTIILQASGARSPIPSQVDKLCEEAFAFKAGSQRSSLIQGLFVASFWVIWNEQNSRIFKN 426
W+ QA + P+ V L + + +Q+ + W IW E+N+RIFK
Sbjct: 938 WS-KAQALLKWNSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIFKQ 997
BLAST of Spg006324 vs. ExPASy TrEMBL
Match:
A0A1S4E2K5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC107991687 PE=4 SV=1)
HSP 1 Score: 256.1 bits (653), Expect = 2.5e-64
Identity = 150/447 (33.56%), Postives = 230/447 (51.45%), Query Frame = 0
Query: 34 KFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGT 93
K + KL +W++S +SKGG++TLI+++L+S+ TY LS+FKVP S CK ++K R FLW
Sbjct: 614 KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKVPVSTCKNIEKTWRNFLWKNP 673
Query: 94 SVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKWLWRYYQEDQPLWKRLVNAKY 153
+ L L++W +T++K+ GG I + K +N AL KWLWRY ED PLWK+++NAKY
Sbjct: 674 PETHKLH-LVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKY 733
Query: 154 TIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLN 213
G +P S+SR+PWFSI K F++ W ++NG FW W N PL+
Sbjct: 734 RSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVSWKIKNGRSFSFWHSHWHQN-SPLS 793
Query: 214 LLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRG- 273
+PR +A S+ ++ + + W ++ W++ PRR L + E LW EL SL G
Sbjct: 794 SHYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLREWEHPLWAELKNSLNASFCENGN 853
Query: 274 --PFSTALAHLSFWDSSSIMRLQ------VDLK---VLTNLWRARILKKPL--------- 333
P T ++ + +S LQ +D + NLW+ I KK +
Sbjct: 854 DSPMWTLNSNGLYTVASVKKTLQQPEQNLLDFQSQNTFKNLWKTSIPKKCIFFIWTLLYD 913
Query: 334 -----------------------------KSLDHIFVHCRLASTIWTIILQASGARSPIP 393
+ H+F+ C +A +IW I S +
Sbjct: 914 SVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRSI------SSHLS 973
Query: 394 SQVD-----KLCEEAFAFKAGSQRSSLIQGLFVASFWVIWNEQNSRIFKNQSHSPYQIWE 426
S V+ +LC ++K ++++ ++ + ++ W IW E+N+RIF + + +IWE
Sbjct: 974 SNVNCLSPKELCITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWE 1033
BLAST of Spg006324 vs. ExPASy TrEMBL
Match:
A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)
HSP 1 Score: 255.8 bits (652), Expect = 3.3e-64
Identity = 147/457 (32.17%), Postives = 220/457 (48.14%), Query Frame = 0
Query: 18 LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSI 77
LG P F +L K KL NW++S +SKGGR+TLI +TL S+ Y +SVFKVP+ I
Sbjct: 686 LGGRPSSSNFWDNVLQKIQKKLSNWKYSQLSKGGRITLINSTLESLPIYQMSVFKVPKGI 745
Query: 78 CKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKWLWRY 137
+K++ R FLW G S +N+ LI W+ + + K+ GG I +N AL KWLW++
Sbjct: 746 AQKIEASWRNFLWNGASNGHNI-SLIRWNQIVSPKEKGGLGIHSVNSTNFALLCKWLWKF 805
Query: 138 YQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNK 197
E PLWKRL+ +KY + G+ P+ +FS++ +PW ++ + F + W + +G
Sbjct: 806 LTEKDPLWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFYKNISWKVNDGED 865
Query: 198 IFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLW 257
I FW D+W+ N PL+L PR FA S+ + V E W SS W++ RPL D E +LW
Sbjct: 866 ISFWLDNWNGN-APLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINRPLRDHEENLW 925
Query: 258 DELIPSLPRPSSSRGPFSTA--LAHLSFWDSSSIMRLQVDLKV---------LTNLWRAR 317
+ SLP P +RG L + +D++S+ R + + LW+
Sbjct: 926 HNIKASLPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISPANFHPNLYKTLWKVE 985
Query: 318 ILK--------------------------------------KPLKSLDHIFVHCRLASTI 377
K K + ++H+F+HC + +
Sbjct: 986 FPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQL 1045
Query: 378 WTIILQASGARSPIPSQVDKLCEEAFAFKAGSQRSSLIQGLFVASFWVIWNEQNSRIFKN 426
W+ S P+ V L + + +Q+ + W IW E+N+RIFK
Sbjct: 1046 WSKAKALLNWNS-TPTDVQSLIQNICSLNIRNQKGLITFNTNATILWKIWLERNNRIFKQ 1105
BLAST of Spg006324 vs. TAIR 10
Match:
AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )
HSP 1 Score: 75.9 bits (185), Expect = 8.9e-14
Identity = 51/194 (26.29%), Postives = 82/194 (42.27%), Query Frame = 0
Query: 13 LWAPLLGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFK 72
L PLL +GP L+ K V++ W ++S GRL LI + + S++ + +S F+
Sbjct: 28 LGLPLLTKKMTTSDYGP-LVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR 87
Query: 73 VPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIK 132
+P + K++D + +FLW G + N + ++W V KD GG I K +N
Sbjct: 88 LPSACIKEIDSICSSFLWSGPEL-NTKKAKVAWSDVCTPKDEGGLGIRSLKEANKG---- 147
Query: 133 WLWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGL 192
W ++ T+ W I+KH F K +
Sbjct: 148 ----------SFWS--ISGNTTL--------------GSWMWKKILKHRALASGFVKHDI 189
Query: 193 RNGNKIFFWQDSWS 207
NG+ FW D+WS
Sbjct: 208 HNGSNTSFWFDNWS 189
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0040037.1 | 5.5e-66 | 33.86 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
TYK06777.1 | 1.8e-64 | 33.86 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0041397.1 | 2.3e-64 | 32.82 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
XP_016902461.1 | 5.2e-64 | 33.56 | PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo] | [more] |
TYK00493.1 | 6.7e-64 | 34.65 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
P0C2F6 | 3.1e-19 | 31.55 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7TES3 | 2.7e-66 | 33.86 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3C4J1 | 8.6e-65 | 33.86 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TIB8 | 1.1e-64 | 32.82 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A1S4E2K5 | 2.5e-64 | 33.56 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC1079... | [more] |
A0A5A7T9I7 | 3.3e-64 | 32.17 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
Match Name | E-value | Identity | Description | |
AT3G24255.1 | 8.9e-14 | 26.29 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | [more] |