Spg006309 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006309
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	pentatricopeptide repeat-containing protein At4g18975, chloroplastic
Location	scaffold4: 3543969 .. 3555588 (+)
RNA-Seq Expression	Spg006309
Synteny	Spg006309

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCGTTTTGCCCCGTTACCAGTTGGGACTTTGGCGCTACTGACATTTGAAGGGCAGCGCTTTGCTCTACCATGCTCATCAGGAGGCTTCATCGAGCAGCGACATGGGCAACGCCTCTGTTGCGAGACATAACTGTAAGTTTTCGATCTCGCTTTCCTTTTCATTTGTCTCCTTGAACCTACGAATGCTTGGATTTCAGTAGCTCTTGTTTGGTTCATCTCTCTGATAATTTATGTCTTCATTATGCATTTCCATTTGTTGATTGGATTGGCAACAGGAAGTTCTTAGTTTCTTTTAATTTCTGCCTGTCTTGTTCTATTATTATTATTTATGTATTCAACAAAATGGCTAATGAAAGGAAGAACTAGATATCTCTCCTTACAACCCTGAACTTATATGGTTGTTTTTAACTTTCCCTTATGCGAATCTCATCTCATCTCTTGAATTATATTTTATTTCTGATTTTGATTTTTCGGATTTCAACCATTTATTAGTTTTCCTTTGGTTTTGTTTTGTGTTATTCATGGAATTATTAACTTTGGCTAAAAGCTCTCCCCATCCCCTATTTCTTATTTGTCTATAGTAGGCAATCTAGGATTTATCCAGAACTAAGCCCCTGTTCATCTAGCTGAATTTGGAACTTCAAGACCTTGGTTGCGTTAACTTGTTTCAGACTTCTTTTAATGAATCTTAATTTATTAATATATGCGCACACAGGTAGGACAAATAATGGAGCTTGGTGTAAGCAAGCTGCAAGTTGGGAACTCCTTTTACTGCACAATGATACAAGCTCAAATGTGTAAACAGCTTGCTGATAAAGATATGAAAAATAAGGTATCTGAGATGCACCCTCCTCAGCAAAAATTATGCAGTCCATGCGTAGAAAGTATGACATACTTTTGAAGTCTTTCGATGCCTCAGCAGAGTAAATTAGTTGGTTGATCTTTTAAAGATTTGACCTTTTTTCTTCTGGTATAACTGTTATAGTTCTCACTATTTAAATTGCACTAGTTGGTAGCAGAAATGATATTAAGGTTGATGAAATATCTTTTATCAAAGGGTTCGAAGAAGGAAAAGGGTCCTATTATCTTTGTTATAATTTTTTTTTGAACCAGAAACAAAATTATTCAAAAAATGAAAAGAGACTATCGCTCGAGGAATACAATCTCCACAAGGAAAGGGAAAACTAGAACAAATGATGAGAATGAATACAAGCAAAAGAATAGAAAACCAACAAAAGGCAAAGAAGGAACTCCAAGAAAAGCCTAAACACTGGTAGAAAAAAATGATCCAACTCAAAGAAGAGACTGAATCAACTGGAAACCTCCACGCTACAAAAGCAAAAAACCGAAACTAAAAAACAAACGACAAAATAAAAGCTGCCCAACGAAGGAAAAAAATTCTTGTAAAGGAGGAAGATCAAGGACTGCACGACCCTTCTGCAGAAACAACCAACTGAATAGGAAGAGAGAAAACCACCCACAAACGAAATGCAACACCAATGGAATCCGACAATCGCCCAACTAAAAGAGACTATACCCAAAAAAAATGCAAAACTGAGCAAACGAGGCAAATGCTTATGAGTTTTAACTGTAGGAGACAAATTGAGAATTGTCCGCATCTGAAAACCACAAATCTCAACTAGAGAAGAAAATTTATCAGGAATTTGGGGTGAAATCATTGATGGAACAACTTCCCCAAATTTATCGACACCTTGTTCATTATCGTCATATAGATTTTGAAACACTTCTGCAAAAGAATCTTCCACAAATTGATCAACCAGCTCTCTTTGTTATAATTTGAAGGAAAAGGGTCCTTACTTGTCAAGTTCTTGTGCTCTTAAATCTTTCTTCTAGTTTTTAGTCTCTTCTACTATGTTGCATTTATTTATGTTAATATCGAGAGGACTTCTAGTTTGAAATTGCAAATGTGTACTTTTCTTCATTTATTCTTTTTTTTTTTTTTTTTGGTTTCTGTTTCTTCTGTCAAACATTCCACAAATTTGATTTGCATTGAGTACTTAAACAGAGTAATAGTGATTATTGAAATTATTGTAATATTTGTCGGTAAAATCAGTTGATTCTTGAATTGTCTACCAATGTTTCAGGATATTAACCATAATAAAGCTCTGTGCCAGACTTCAGAACAAAATACTGGAGACATGAGGAAGCACCAAATTGGGGAAAATGTATCACGGAAGGACAAAATTAACTTCCTTGTAAATACGGCAAGTATAATTGGGAAACTATCTTCCCTCGTTCTCTCTTCCTTCTCTCTCTCTCTCTCTCTTTCTCCCAAAAGGCTGAAAAGTAAAGAAAGAAACTTCCAAGTATTCAAATTCTAAAACCGGTTTCTTTGATAATAGTTGCATAAACCAAGCATTAATTGGTGCGTTTTTTTTTTAATCCTATCAAAAGTAATATTAAGAAGCCTTTTGTAACTCCTTTTCCCTTCTATCATATATTTTATTTACTTCAAAAAAATATTTTGTTTCCAAGGAAAAAGTAATATTAGAATTTGCTGAGCACTAGAATCCAATATCATTTGATCAAATGAAAAAAGGTTCCAATAGGCTTTCAAAATTCAAATAGAAACCAATGAATTTTATGATAGGAAATAAACTAGATGTGAATCTTTCTCAAATGCGCACTATAACTAAATCCCCCACTAGAACCAAATTATGAGAAGTGACTCCAGTTGTTAATGAATAGAAAAGAGGATGAACAGAAAAACATCGTGTACTAACATTCAAAAGGAGACAGTGAAGGGAGTAAAGCTCCAAACCTCCTCTTGTGTACCCTCAACACCCAGATAAAATCCCACTCCTCTTGAGCCAGATACTCCCAAGAGTCAAGATATTGACTTGCCATAAAATTTTCTCTTTTTTCGAGAAGTGGGTATAGAAACCTTCTACTCATGGCTATAAAATCTCCACGAGGACTCCATAATATTTGGGAAGAAGTTCAAAAGTTGTTTCAATTGTTCGTATTCAAAGGACAATTCCAAAAAGTATGATTGAGATCCTCTGACATTTGTTCCTGTGATTTTCTCTACAAGTTCTCCAACTCTAGATCAAAGTGGCTGGAGAGGTCTACCCGACTTCAAATTAAAAAATATGTTTCTAGTGTAACATTTTTCTGAAAAATGACGACATCCTTCCTGATTTGAAAGCTCTTGATGGCCTAGAAGACTTCACCTCTTGTTGTGCTCCGATAGAACCTCTAGAAGCTCTCCCTCTCAAAACCCAACTCCAAGGCCTTACATGGAAGCAAATTTTTTTTTTTTTTTTTGGTGGCTAAAGTATTAAGCTCTTTGGCTGAAATTCTCAATTCAGATGGCACAAGCTTCTTCAACGACCTTTAAATTGAGAGGGAAGTCCTTTTCTTCTTCAAAGACCTTTCTAAGAAATGTCCGGTCACAATGTTCACGAGGAACTTCTGAATCTTGTATGGGACATACCAGTAGAGGCCAAACCAACTAATTTGTTTGGAAAATGAATAATTGAAGTATATTGTTGTATTTACAACTATTGCTGCACAAAGGGTTCCAATGTGGATTGGGATTTTCTGGATGAGGTTCTTGAGAAGAAATATTTTGGTTACAAATGGAGGTTGTGGTTTTGGAGTTGCATTAGGTCGGTCTAATATTCATTCCTCATTAATGGTAAGCCTAAGGTAGGATTCGAGCTTCGAAAGGTCGTAGACAAGGTGATCCCCTCTCTCCTTTTCTCTTTCTACCGGTGGTGGACACCCTCTGCATAAGGGTCTCTAGAAATTTGGAAGGTGGTATTTTTTCAGGGTTTTGAAGTTGATTTGGATAAGATTCCTCTCTCTCATCTTCAATTTTTTTATGATACTATTTTCTTCTACTTAGATCCTTTCTTGATTTTCATTCATATCCTTCGTTTCTTCAAAACCTTGTTTGGGCTTAAAATCGACAGGGGGGAAGTGTCAAATCTTGAGTTTGAATTGCGACCCTTGTAAGTTGAATAGATGGGCGACTCATATGGGGTGTGAGGTTGGGTCCTCCCCTTCTTATTTAGGTCTCCTTCTTGGCCATTACTTGAGATATATCCCTCTGTCTTAGACGAGGTTCAAAAAGGACTCCCTACTTGAAAGAAAAACTTTTTCTCCAAAGGTGGTAGATTGACTTTTATCCCATCAGTCCTTATCTGTATTCTTGTTTATTTCTTTTTCCCTTTTTGGATCCCTTGGGTTGATATGTAACTTCTTAGAAAAGCTTATGAGGGATTTTCTATGGGAGGGGGTTGAGGAAGGGATAGGGGTGTATTTAGTGAGTTGGGAAACGATGGGGAAGCCGTTGAACTTAGGGGGTTAGGGTTGGGAACTTTAAGAACTTGTAACAAAGCCTTGCTGGCTAAGTGGATCTGACGGTTCTTTCTCGATCCCGATTCCCTTTTAGTTTAGGATTATTGTGAGCAAATATGGTCATTATCCTTTCGAGTGGGTGTTGAGTGAGATCAAAGACACTTTCAAGAATCTTTAGAAAGACATTTCCTTGGAGCTCTCCTCTTCCTTAATCCAGTGCTCTGTAGGGGATGGGTGGGAGGGACACACTTATTTTCTGGAAGATCTTTGGATGGGAGATTGTTTCCTTTGCTCTTTGTTCCCTCGTTTATATCTTTTATCCTTTATGAAAAATAGTTCAGTGGCTGATGTCCTTGGCTCTTAGGGGAGTTCCCTTTTTTTTTTTTCCCTTAGTTTTTTACGTTCGTTATCTGATATAGAAATAACGGACAACTTAGCCCTTTTAACCTTGTTAGAAGGGGTTAACCTTAGACTCGAGAGATGAGATGTTCGCTTTTGGAGGCCAGAATGCTCTGGGGGATTTTCTTGTAGCTCGTTCTTTCATTGTTTGCTTAATCCCGATTCGGTTAGGTAGTTAATCTTCTCGTGTATGTGGAAGGTGAAACTTCTAAAGAAGGTGCAATTCTTTGTTTGGCAGGTCATTCTTGGAAGGGTTAACCCTTATGATCGGCTTTTTCTTTTTTTCTTTGATGAAAAACTAGCCTTTCATTGAGGAAAAAAAATAAGAATACAAGGGCATTAGAAAAAACCAAGCCTACAAAAGGGAGCCAAACTATAGAAAAAGGCTCCAATCAAGCAAAATAAGGCCTATAGAGTAATTACAAAAAGCATGTGTCACCGATGCCCAAAGAAAAACATGAAATCTAGTCAAGGACCAAACCTCCCAAGAACTACTCTCTTGCCCCCTAAAGGTCCTATTATTCATTTTCCCCACAAATCCCATAGGATAGCATAGATCCTTGCCTGCCCCAAGAACCCCCCTTTCAAAACGGCGGATGGGGGAAAAACTCCTCTAGCATCTGACTAAGACCTCTATGCCTAGCAAATTGCAAGCTGAATATCTTAGAGAAGGAACTCCACACTGAATTGACAAAGTTGCAGTTCCAAAGCATATGGTCAAGGTTTTCCTTTGCCATCCAAAAAAAAATGCAATAAAATGAACTAGTCAACGACAACATCCTTCTCGAGAGCCAATCCAAGGTGTTAACTCTTCCATGGATGATTTGGAAGACTAGAAATTGAACTTTCTTTGGAATTTTCACCTTCTATATGATAGAAAAGATGGACTCACCAATTGAAGGAGGGTTTGATAAACACTGGAAGAGCGACAATAGGGGAAACCCTGGAGAAAGATGTCTTCCTTGGTGGGAACTTTTTGTTGTATTCTTTGTTGGAAGATGGAGGAAGATCTTGATCATTTGCTTTGGGGTCGTCGAAGCGAGGTGCAGTGAAGAAGGCGCGGCCAGCCTTAGGCGCCTTTGGGGCTTCACATTTTTATATATGTTTTACATTTTTTTAAACCTAAATACTCGTTATGAAGCTAATTTTAAATTTAACTTCTGGGGCGTTGCCCTGAACCCCCAAAACCGGAGTGTCAAATATCATATTCAAGGCATATATTTTAGGGTGGAGTATTGACATCATCGTACTTGGTCATTCGGAGTGTCAAAAGGCATATTAACAAATACTAAACTCACTGTTTTTTTGTGGAGTATTGACATTTGACTCTATGTTGGAAGACTAACATTTGAACCTTATTTATCTTTTATCTATTTTTCTTGGTTAAAAACTTTATTACTTGCCATGAAAGTGTTTTATATACATGTATATATTTTTGTAAGTTCTTTTTTTTTTCTATATAGTGCACCTTAAAGAAAAAAGCCCGCGCCTTTTTGTGCGCCTTGCGCCTAGGCCCCAGGAGGCCATTGCGCCTTAGTGCCCCTTGAGCCTTTTAAAACACTGAGGTTGTGACTTTGCCTACTCCGTTTTTTTTTTTTATGAAGAACCAACCTTTCATTGAGAAAAAATGAAATAATATAAGGGCATACAAAAAAACCAAGCCCCAAAAGAAAATCCCCTTAGATAAAGGGATGCCAATCTAACAAAATAAGACCTAAAGAATAATTACAAAATAAACGCGTCACCGACGCCCATAAAGAGACAAAATATTTAATAAGGTCCCAAACATCCTCCGCATTCCTCTCCTTCCCTCTAAAAATTATGTTATTTCTCTCCCCCCACAAACCCCAAATGATAGCACAAATCCCCGCTTGCCATAAGAAATTTCTTTGGTCCCGAAAAGGAGGATGGGGAAGGAACTCATCGATCATCTCCCTGAGATCCCTGTGTCTAGCGAACTGAAGCCCAAAAATCTCAAACAAAGTGTTCCAAACTGAGCGCGCAAAGTCACAGTGCCATAAAATATGATCGAGGTCTTCCTCCGCCATCCTACAGAGAATACAACAGAATGGGCCTATCAAATTGGGCATCTTTCTCGCAAGCCGATCAAGGGTGTTTTTCCATGGAGAACCTGCCAAGTAAAAAACTGCACCTTTGGAATTTTTACTTTCCAAACCAGAGAATAAACTGATTTCTCAGGAGGAGAAGAAGGGTCAAGAAGACAATGAAAGAACGAGCGGCAAGAGAAACCCTTAGAGGGGTTAGGGTTCCAAACACGAGTATCCCTCCTACCCGGTCTAAAGGGACTTTGCCTACTCCGTTTGGAGTATCTTCTTTGAGGTGTTTGGCTTTCAGCTTGTAGGGGTGTTCAAAACTAGATCGAAAACCGACTTGGCCAACCGAAACGACGTCAATCGGTAAGTTTTTTTGTCATTTTCAATCAAAGTTGACAAAACTGACTGTCGGTTGGTTGGTCCACTAAAAAATGGAAAAATCTGACCGAGCGACCGATATTAATATATTAATAAAAAAAATTATGTCATGTCTAGCATTTTTAATTATTTTTTTATTCTCTTCTCCCTCTTCCTTTATTCTCTCTTTCTTTCTCCTTCATCTGAATCCTCTCCCCCTCTCTCTCTTTTCCTCTCCCCTCTTTTCTCTTCTCTTTCTTTCTTCTTCACCTTTTCTTTCTCTCTTTTCTCTTTCCCATTCTTTCTCATGCATTCTCTCTTCCTCATCGACTGACGCCGACATCAAGCACTCTTTCACCTCTCCCTTCTCTCTTTTTTCCCCTCCTCACTGATCTCTCTTTCTCTCCTCTTTCCCTCTTCCCTTATACGAATCTATTGTTCTCTCTTTTTTTCTTTTCTTTTCTTCCTTTTTTTTTTTTGTTTAGCTCGTGAGAGTCAAGAAACCGACTAAATCGACCAACCGTATGATGTGATTGGTCAGTCAGTGTCACCATCTTCTTCAAAACCGATTACAACCGACCGACTCAAATCGACATGTCGGTTTGAGCTCAAAACCGACACCGACCGACTGATGATCACCTATCAGTTTGCTAGACATCGTTGGTGCAGGGAGATAATCGAGGATTTTCTTCTCCATATGCCTTTTCGGGAGAAAGAGAGATTTTTATGGCTGGTGGGATTTCTGCTTTTTGTTGGGATTTGTGCTGTGAGACGTACAATGGAATCTTCATAAGGGTCAAAAGATTTCCTTGTGATGTTTGATCTAGTGTTAGGTTCTATGTTTTGCTTTGGACGTTAGTGTCTAAGGTTTTTTTTAACTATTCATTAGGTCTCAATCTCATTTTGTTTGAATGGAGTCCCTTTTTGTAGCTGGGTTCTTTTTTTGGACTTGTTTATTTTTTAATGCCCTTGCATTCTTTTATTTTTTTCTCAATGAAAACTTGGTTTCTTATTAAAAAAAAAATGGAAAGGAAGCTGAATTTGGATTCTGCGTTGGTTGATTAATTTAAATTATGCGTTACATGGATGGTCTGCTTTCTTATAGGCCCTTTTGCGTTCTTTCTTTCTTTCTTTCTTTTTTTTTAATGAAATTTTGCTTTTTCCATAAAAACGTATCTAATAACAATTAAAAAAATATATATTTTAAAGTGAGAAGATATCAAGAATATACAGTCATTGGCTCTTCAAAATTTTCAATGTTGCGCTTTGATGCAGTCTTAATTGAGGAATAGCTTAACAATATATTATTTTTCTAGCTGTATTCTCTGTCAAACCAAATCCTGTGAATTATATGTTAAATTGCATCTCACAGGATAGATGATTCATGTGTTCAGTATTTTATGAAAGAAAACAGTATTATATTTTTTTGCCCGTATCAAGCTGTCTTTTATGCAATGCTCTTGCTTTTCTTCTTCTTTTTCTTCTTTTTAAATCTATATCTTTATTGTCAATATCTAACTTTGGAGGGTTATGATCTCTAAATGTTGCAGCTTCTCGATCTGAGAGATAGTAAGGAGGCTGTTTATGGTGCTCTTGATGCCTGGGTTGCATGGGAGCAAAACTTTCCAATAGCATCCCTTAAGCAGGCATTGGCTGCCCTTGAGAAGGAACAGCAGTGGCATAGAGTTGTTCAGGTATGAATTGTACCCGCCATTCTTTATTTACTCTCTTTTCCCTTTATACACTCTTCCCTTTTTCATGTTGAATCTAGGAAATTAGTCATCTCCCTAGCCAAAAGGCAGGAAGAACATTAAATTTCTGGGGCAGGAATACGGGCATGCAATTAGATGCAAATGCACAATATTACTGTTATACCCATATTCTTGTGTAAACTGACAGAACATTAGAGAATTGGCTGTGTATTTCATTCACTAAGTAATGGGATATTTTACCTTTTTTTTGTGTAAAGTAAAATCTAAGAGAATGCGCAAATGAACCCTAGTTTAAGAAAGAGTAAATAGCAAAGACAATAAGTAATGGGCTTTTAATAGCTAAGATACACTATTTTAACACTAATATACAGCCGAAGAAGCTCAGATACTTCAATTTAATGGTGGACGCATGCACAACACTTGTTAACACAATAGATGTGTGTCAAGACACTGATTGTATAAAATGAGTATTTTATTTCTTCTTATGAGAAATCAAGTTTTTGAAAATGAAATAATACACAAATAAGCAAAAGAAATTAAAAGATACAGTCCACCAGAAGGAGCCTCAGACTAACTATTCCAAAATAGTAAGACTAAGACCTATAGGGTAATAACAAAACTCCTTAGAAACTGTAATTGTACAAAATGGATATAAGTCCAATACATATTTGTCACATACTGAGCACTTATTAGGCATAATAAATAGACGTATGTAGTATTATAGGCCAAAACTATAAATTTTGAGAGCTATGTTAAACTTGTTCTTCGAAGCATATAAATGTATAAGCTTATCAATTTTAAATTTCCTAGTAGCACAAAAATTATATAGGTTTTTTTTTTTTTTAAAATATATATATATATATATATATATATAAAATATGTCCTTTTTGTGTCCCTGTCCTAAAATTTTAGAAAATGACATGTCATTATCCTTGTTAGTGTTGTGTCTGATACATATTTGTATCTTTGCTCAGTATACAACTTATAACATTTCCAATTTCCAAAGCAAATATGTTAATGATGTTCAACTTCTTGTTATAATGATAGTCAAGACAATCGGTATTTCATTTAGAGCTTTCATGAAAATGTCTCCAAAATTCAATCTTCACATGTCACGTCGGAGCCAAGTATTATTATATTTCGAATGACAATCAACTTTAATGGTATAGTTCCTTTATATGAAGAGCAATTTGTATCTTTTTTTATTTAAGTTGTGATTGCAAAACCTAGTTTAGTTAAAAAATTATGTGTTTAGATGAATTCATGTAAACTGAAACATACTGTGCACTTTGGTAATACTATAGTATAGCCTCTTTGTATTATAGATATTTTGAGTTAAACTGTTGAAACGTTAATTCCTAAAATATTTCTTTAAAGCTTGTTACTATTGAATTTAGACAGTTGATGGGTAAAGGTATAGGTTATAGAAACAGATGCTGTTAGATTCATGCAAATGTCTTCCAGGTAATCAAATGGATGTTAAGCAAGGGACAGGGAACCACAATGAGCGTCTATGGGCAGTTAATACGGGCTTTAGACATGGACCATCGAGCGGAAGAGGCACACAAGTTTTGGGTCATGAAAATTGGTTCAGATCTTCATTCAGTCCCTTGGCAATTGTGCAGAAGCATGATATCAATATACTATCGAAATAAAATGCTAGAAAATCTCGTAAAGGTATAATTCTCTCTTTTCATTTAGTCAATGTAGTGCCTTCTGGAAATGACTTTATTTTTGGGATATTGTTTTGTTATTTTCCCTTTTTCCCACTAAACTATTCGGAATAGGAAATAAAATTTTCCTCTCATCTTAAAAGAAAAAAGAGAATATGTTTCAATTAATTAAAAAGCAAACTATCTTCCTAATAATTCATCGTATTGGACCAGCTTCTAACAGTGATGAGTTTGGTTTCATCCTTGGGCCTAGGAGTTAAATTCTTACTAAGCTTCATAATTATGCTACCCTTCTTTTATATGCTATCCCTTTTTGTATAGTTCTTTGTGTTGGGGGTGGTTCAGCTTGTTGGTCTGGTTTTTTGTATTCCAGTTAGCAAGAAAAGAGAATGTTTGATAACCATCACTCTTTCCGATGCTTGAATAATTGAATGATATCTATGGATGCAAAATGGTAAAAGTATTGGTGAATTTTAAATTGTTGTAGATCTAATATCATTTCCCCTATCCTCTAAGTTAATCTTGGCTTCAGCTTTTTAAGGATCTCGAAGCTTTCGGTCGTAAACCCCCAGACAAATCAATAGTGCAGAGGGTAGCAGATGCTTATGAGATGCTAGGCTTGCTTGAAGAGAAAGAGAGGGTGTTAGTAAAGTACAAAGACCTTTTCACTGGTGAGAAGAAAGCGTCCATAAAAAAATATAAGAGGATTTCGTCTGAGAAATCAAAGAGAAAAAAGAAAATCGATGAAGGGCACTGAAGACAATGGCGACCTTATGAAGGCTCAACGGCAGGTTATCAATATTTAAACCTACGAAAGACTTGTGTCTTAGCAATTGTGTAATTTACTTTTCATTTTTTTTTAGTTCAACAATACGGGAGGTTTTGAACTCATGACCTCTTGGTCATAAGCACATATTTTATGTAAGTTGAACTATGTTTTTGTTGGCAGTTTAACTTTTCATTTATTTTAGCAATTTAGACTAAGCTTCCGTCTCCTGAAGCTCTCACCAACGTGTTGCTTTGGCTCTGTAAATAATTCTTTTTGTTAGTAAAATTACAAAGTCAGTTCTCCAACTATAGTAGTGGCATCTATTTAGC

mRNA sequence

ATGCTCATCAGGAGGCTTCATCGAGCAGCGACATGGGCAACGCCTCTGTTGCGAGACATAACTGTAGGACAAATAATGGAGCTTGGTGTAAGCAAGCTGCAAGTTGGGAACTCCTTTTACTGCACAATGATACAAGCTCAAATGTGTAAACAGCTTGCTGATAAAGATATGAAAAATAAGGATATTAACCATAATAAAGCTCTGTGCCAGACTTCAGAACAAAATACTGGAGACATGAGGAAGCACCAAATTGGGGAAAATGTATCACGGAAGGACAAAATTAACTTCCTTGTAAATACGGCAAACTCGAGAGATGAGATGTTCGCTTTTGGAGGCCAGAATGCTCTGGGGGATTTTCTTGTAGCTCGTTCTTTCATTATGGAGGAAGATCTTGATCATTTGCTTTGGGGTCGTCGAAGCGAGGGAGATAATCGAGGATTTTCTTCTCCATATGCCTTTTCGGGAGAAAGAGAGATTTTTATGGCTGGTGGGATTTCTGCTTTTTGTTGGGATTTGTGCTGTGAGACGTACAATGGAATCTTCATAAGGCTTCTCGATCTGAGAGATAGTAAGGAGGCTGTTTATGGTGCTCTTGATGCCTGGGTTGCATGGGAGCAAAACTTTCCAATAGCATCCCTTAAGCAGGCATTGGCTGCCCTTGAGAAGGAACAGCAGTGGCATAGAGTTGTTCAGGTAATCAAATGGATGTTAAGCAAGGGACAGGGAACCACAATGAGCGTCTATGGGCAGTTAATACGGGCTTTAGACATGGACCATCGAGCGGAAGAGGCACACAAGTTTTGGGTCATGAAAATTGGTTCAGATCTTCATTCAGTCCCTTGGCAATTGTGCAGAAGCATGATATCAATATACTATCGAAATAAAATGCTAGAAAATCTCGTAAAGCTTTTTAAGGATCTCGAAGCTTTCGGTCGTAAACCCCCAGACAAATCAATAGTGCAGAGGGTAGCAGATGCTTATGAGATGCTAGGCTTGCTTGAAGAGAAAGAGAGGGTGTTAGTAAAGTACAAAGACCTTTTCACTGGTGAGAAGAAAGCGTCCATAAAAAAATATAAGAGGATTTCGTCTGAGAAATCAAAGAGAAAAAAGAAAATCGATGAAGGGCACTGA

Coding sequence (CDS)

ATGCTCATCAGGAGGCTTCATCGAGCAGCGACATGGGCAACGCCTCTGTTGCGAGACATAACTGTAGGACAAATAATGGAGCTTGGTGTAAGCAAGCTGCAAGTTGGGAACTCCTTTTACTGCACAATGATACAAGCTCAAATGTGTAAACAGCTTGCTGATAAAGATATGAAAAATAAGGATATTAACCATAATAAAGCTCTGTGCCAGACTTCAGAACAAAATACTGGAGACATGAGGAAGCACCAAATTGGGGAAAATGTATCACGGAAGGACAAAATTAACTTCCTTGTAAATACGGCAAACTCGAGAGATGAGATGTTCGCTTTTGGAGGCCAGAATGCTCTGGGGGATTTTCTTGTAGCTCGTTCTTTCATTATGGAGGAAGATCTTGATCATTTGCTTTGGGGTCGTCGAAGCGAGGGAGATAATCGAGGATTTTCTTCTCCATATGCCTTTTCGGGAGAAAGAGAGATTTTTATGGCTGGTGGGATTTCTGCTTTTTGTTGGGATTTGTGCTGTGAGACGTACAATGGAATCTTCATAAGGCTTCTCGATCTGAGAGATAGTAAGGAGGCTGTTTATGGTGCTCTTGATGCCTGGGTTGCATGGGAGCAAAACTTTCCAATAGCATCCCTTAAGCAGGCATTGGCTGCCCTTGAGAAGGAACAGCAGTGGCATAGAGTTGTTCAGGTAATCAAATGGATGTTAAGCAAGGGACAGGGAACCACAATGAGCGTCTATGGGCAGTTAATACGGGCTTTAGACATGGACCATCGAGCGGAAGAGGCACACAAGTTTTGGGTCATGAAAATTGGTTCAGATCTTCATTCAGTCCCTTGGCAATTGTGCAGAAGCATGATATCAATATACTATCGAAATAAAATGCTAGAAAATCTCGTAAAGCTTTTTAAGGATCTCGAAGCTTTCGGTCGTAAACCCCCAGACAAATCAATAGTGCAGAGGGTAGCAGATGCTTATGAGATGCTAGGCTTGCTTGAAGAGAAAGAGAGGGTGTTAGTAAAGTACAAAGACCTTTTCACTGGTGAGAAGAAAGCGTCCATAAAAAAATATAAGAGGATTTCGTCTGAGAAATCAAAGAGAAAAAAGAAAATCGATGAAGGGCACTGA

Protein sequence

MLIRRLHRAATWATPLLRDITVGQIMELGVSKLQVGNSFYCTMIQAQMCKQLADKDMKNKDINHNKALCQTSEQNTGDMRKHQIGENVSRKDKINFLVNTANSRDEMFAFGGQNALGDFLVARSFIMEEDLDHLLWGRRSEGDNRGFSSPYAFSGEREIFMAGGISAFCWDLCCETYNGIFIRLLDLRDSKEAVYGALDAWVAWEQNFPIASLKQALAALEKEQQWHRVVQVIKWMLSKGQGTTMSVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLENLVKLFKDLEAFGRKPPDKSIVQRVADAYEMLGLLEEKERVLVKYKDLFTGEKKASIKKYKRISSEKSKRKKKIDEGH

Homology

[Close]

BLAST of Spg006309 vs. NCBI nr
Match: XP_022154414.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 469.5 bits (1207), Expect = 2.6e-128
Identity = 249/372 (66.94%), Postives = 270/372 (72.58%), Query Frame = 0


Query: 1   MLIRRLHRAATWATPLLRDITVGQIMELGVSKLQVGNSFYCTMIQAQMCKQLADKDMKNK 60
           ML+RR HRA TW TPLLRD+T GQIM+LGVS+LQVGNS YCTM+QAQMC+QLAD+DMKNK
Sbjct: 25  MLVRRFHRATTWVTPLLRDLTAGQIMDLGVSRLQVGNSCYCTMVQAQMCQQLADRDMKNK 84

Query: 61  DINHNKALCQTSEQNTGDMRKHQIGENVSRKDKINFLVNTANSRDEMFAFGGQNALGDFL 120
           D+N++KALCQ SEQN GDMRKHQIGENVSRKDKINFLV T                    
Sbjct: 85  DVNNSKALCQRSEQNDGDMRKHQIGENVSRKDKINFLVAT-------------------- 144

Query: 121 VARSFIMEEDLDHLLWGRRSEGDNRGFSSPYAFSGEREIFMAGGISAFCWDLCCETYNGI 180
                                                                       
Sbjct: 145 ------------------------------------------------------------ 204

Query: 181 FIRLLDLRDSKEAVYGALDAWVAWEQNFPIASLKQALAALEKEQQWHRVVQVIKWMLSKG 240
              L+DLR SKEAVYGALDAWVAWEQNFPIASLKQ LA LEKEQQWHRVVQVIKWMLSKG
Sbjct: 205 ---LVDLRGSKEAVYGALDAWVAWEQNFPIASLKQVLAVLEKEQQWHRVVQVIKWMLSKG 264

Query: 241 QGTTMSVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLENL 300
           QGTTM VYGQLIRALDMDHRAEE+HKFWVMKIG+DLHSVPWQLCRSMISIYYRNKML+NL
Sbjct: 265 QGTTMRVYGQLIRALDMDHRAEESHKFWVMKIGADLHSVPWQLCRSMISIYYRNKMLDNL 313

Query: 301 VKLFKDLEAFGRKPPDKSIVQRVADAYEMLGLLEEKERVLVKYKDLFTGEKKASIKKYKR 360
           VKLFKDLEAFGRKPP+KSIVQRVADAYEMLGL EEKERVL KYKDLFT E+K  I+KY +
Sbjct: 325 VKLFKDLEAFGRKPPEKSIVQRVADAYEMLGLHEEKERVLEKYKDLFTDERKGPIQKYNK 313

Query: 361 ISSEKSKRKKKI 373
           IS EKSKR++K+
Sbjct: 385 ISFEKSKRRRKL 313

[Close]

BLAST of Spg006309 vs. NCBI nr
Match: XP_022154416.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X3 [Momordica charantia] >XP_022154418.1 pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X3 [Momordica charantia])

HSP 1 Score: 469.5 bits (1207), Expect = 2.6e-128
Identity = 249/372 (66.94%), Postives = 270/372 (72.58%), Query Frame = 0


Query: 1   MLIRRLHRAATWATPLLRDITVGQIMELGVSKLQVGNSFYCTMIQAQMCKQLADKDMKNK 60
           ML+RR HRA TW TPLLRD+T GQIM+LGVS+LQVGNS YCTM+QAQMC+QLAD+DMKNK
Sbjct: 1   MLVRRFHRATTWVTPLLRDLTAGQIMDLGVSRLQVGNSCYCTMVQAQMCQQLADRDMKNK 60

Query: 61  DINHNKALCQTSEQNTGDMRKHQIGENVSRKDKINFLVNTANSRDEMFAFGGQNALGDFL 120
           D+N++KALCQ SEQN GDMRKHQIGENVSRKDKINFLV T                    
Sbjct: 61  DVNNSKALCQRSEQNDGDMRKHQIGENVSRKDKINFLVAT-------------------- 120

Query: 121 VARSFIMEEDLDHLLWGRRSEGDNRGFSSPYAFSGEREIFMAGGISAFCWDLCCETYNGI 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 FIRLLDLRDSKEAVYGALDAWVAWEQNFPIASLKQALAALEKEQQWHRVVQVIKWMLSKG 240
              L+DLR SKEAVYGALDAWVAWEQNFPIASLKQ LA LEKEQQWHRVVQVIKWMLSKG
Sbjct: 181 ---LVDLRGSKEAVYGALDAWVAWEQNFPIASLKQVLAVLEKEQQWHRVVQVIKWMLSKG 240

Query: 241 QGTTMSVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLENL 300
           QGTTM VYGQLIRALDMDHRAEE+HKFWVMKIG+DLHSVPWQLCRSMISIYYRNKML+NL
Sbjct: 241 QGTTMRVYGQLIRALDMDHRAEESHKFWVMKIGADLHSVPWQLCRSMISIYYRNKMLDNL 289

Query: 301 VKLFKDLEAFGRKPPDKSIVQRVADAYEMLGLLEEKERVLVKYKDLFTGEKKASIKKYKR 360
           VKLFKDLEAFGRKPP+KSIVQRVADAYEMLGL EEKERVL KYKDLFT E+K  I+KY +
Sbjct: 301 VKLFKDLEAFGRKPPEKSIVQRVADAYEMLGLHEEKERVLEKYKDLFTDERKGPIQKYNK 289

Query: 361 ISSEKSKRKKKI 373
           IS EKSKR++K+
Sbjct: 361 ISFEKSKRRRKL 289

[Close]

BLAST of Spg006309 vs. NCBI nr
Match: XP_038887984.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 450.7 bits (1158), Expect = 1.3e-122
Identity = 246/371 (66.31%), Postives = 265/371 (71.43%), Query Frame = 0


Query: 1   MLIRRLHRAATWATPLLRDITVGQIMELGVSKLQVGNSFYCTMIQAQMCKQLADKDMKNK 60
           ML+RR HRA  WATPLLRD+TVGQIMELGVS+LQVG+  YCTMIQ QM KQLA KD+KNK
Sbjct: 1   MLVRRFHRATAWATPLLRDLTVGQIMELGVSRLQVGSFCYCTMIQDQMSKQLAVKDIKNK 60

Query: 61  DINHNKALCQTSEQNTGDMRKHQIGENVSRKDKINFLVNTANSRDEMFAFGGQNALGDFL 120
           D N++KAL QTSEQN GD+RKHQIG+NV RKDKINFLVNT                    
Sbjct: 61  DFNNSKALGQTSEQNIGDVRKHQIGKNVPRKDKINFLVNT-------------------- 120

Query: 121 VARSFIMEEDLDHLLWGRRSEGDNRGFSSPYAFSGEREIFMAGGISAFCWDLCCETYNGI 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 FIRLLDLRDSKEAVYGALDAWVAWEQNFPIASLKQALAALEKEQQWHRVVQVIKWMLSKG 240
              LLDLRDSKEAVYGALDAWVAWEQ+FPI SLK  L  LEKEQQWHRVVQVIKWMLSKG
Sbjct: 181 ---LLDLRDSKEAVYGALDAWVAWEQDFPIGSLKHVLTVLEKEQQWHRVVQVIKWMLSKG 240

Query: 241 QGTTMSVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLENL 300
           QGTTM+VYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMI+IYYRNKMLE+L
Sbjct: 241 QGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMIAIYYRNKMLEDL 288

Query: 301 VKLFKDLEAFGRKPPDKSIVQRVADAYEMLGLLEEKERVLVKYKDLFTGEKKASIKKYKR 360
           VKLFKDLEAFGRKPP+KSIVQRVADA E+LGLLEEKERVL+KYK LFT EK+ SIKKYKR
Sbjct: 301 VKLFKDLEAFGRKPPEKSIVQRVADACEILGLLEEKERVLMKYKYLFTDEKEGSIKKYKR 288

Query: 361 ISSEKSKRKKK 372
           +S EKSK K+K
Sbjct: 361 VSFEKSKGKRK 288

[Close]

BLAST of Spg006309 vs. NCBI nr
Match: XP_022967610.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 448.4 bits (1152), Expect = 6.3e-122
Identity = 241/359 (67.13%), Postives = 258/359 (71.87%), Query Frame = 0


Query: 1   MLIRRLHRAATWATPLLRDITVGQIMELGVSKLQVGNSFYCTMIQAQMCKQLADKDMKNK 60
           MLIRR HRAATWATPLLRD TVGQ+MELGV+KLQ+GNS YCTM+Q QM K+ ADKDM +K
Sbjct: 1   MLIRRFHRAATWATPLLRDTTVGQVMELGVNKLQIGNSCYCTMLQNQMPKRFADKDMTDK 60

Query: 61  DINHNKALCQTSEQNTGDMRKHQIGENVSRKDKINFLVNTANSRDEMFAFGGQNALGDFL 120
           D+N++K L QTSE+N GD+RKHQIGENVSRKDKINFLVNT                    
Sbjct: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKINFLVNT-------------------- 120

Query: 121 VARSFIMEEDLDHLLWGRRSEGDNRGFSSPYAFSGEREIFMAGGISAFCWDLCCETYNGI 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 FIRLLDLRDSKEAVYGALDAWVAWEQNFPIASLKQALAALEKEQQWHRVVQVIKWMLSKG 240
              L+DLRDSKEAVYGALDAWVAWEQ+FPIASLK ALA LEKE QWHRVVQVIKWMLSKG
Sbjct: 181 ---LMDLRDSKEAVYGALDAWVAWEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKG 240

Query: 241 QGTTMSVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLENL 300
           QGTTM+VYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLE+L
Sbjct: 241 QGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDL 276

Query: 301 VKLFKDLEAFGRKPPDKSIVQRVADAYEMLGLLEEKERVLVKYKDLFTGEKKASIKKYK 360
           VKLFKDLEAFGRKPP+KSIVQRVADA EMLGL+EEKERVLVKY  LFT EKK SIKKYK
Sbjct: 301 VKLFKDLEAFGRKPPEKSIVQRVADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYK 276

[Close]

BLAST of Spg006309 vs. NCBI nr
Match: KAG6571702.1 (Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 447.6 bits (1150), Expect = 1.1e-121
Identity = 241/359 (67.13%), Postives = 258/359 (71.87%), Query Frame = 0


Query: 1    MLIRRLHRAATWATPLLRDITVGQIMELGVSKLQVGNSFYCTMIQAQMCKQLADKDMKNK 60
            MLIRR HRAATWATPLLRD TVGQIMELGV+KLQ+GNS YCTM+Q QM K+ ADKDM +K
Sbjct: 1376 MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFADKDMTDK 1435

Query: 61   DINHNKALCQTSEQNTGDMRKHQIGENVSRKDKINFLVNTANSRDEMFAFGGQNALGDFL 120
            D+N++K L QTSE+N GD+RKHQIGENVSRKDKI+FLVNT                    
Sbjct: 1436 DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNT-------------------- 1495

Query: 121  VARSFIMEEDLDHLLWGRRSEGDNRGFSSPYAFSGEREIFMAGGISAFCWDLCCETYNGI 180
                                                                        
Sbjct: 1496 ------------------------------------------------------------ 1555

Query: 181  FIRLLDLRDSKEAVYGALDAWVAWEQNFPIASLKQALAALEKEQQWHRVVQVIKWMLSKG 240
               L+DLRDSKEAVYGALDAWVAWEQ+FPIASLK ALA LEKE QWHRVVQVIKWMLSKG
Sbjct: 1556 ---LMDLRDSKEAVYGALDAWVAWEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKG 1615

Query: 241  QGTTMSVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLENL 300
            QGTTM+VYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLE+L
Sbjct: 1616 QGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDL 1651

Query: 301  VKLFKDLEAFGRKPPDKSIVQRVADAYEMLGLLEEKERVLVKYKDLFTGEKKASIKKYK 360
            VKLFKDLEAFGRKPP+KSIVQRVADA EMLGL+EEKERVLVKY  LFT EKK SIKKYK
Sbjct: 1676 VKLFKDLEAFGRKPPEKSIVQRVADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYK 1651

[Close]

BLAST of Spg006309 vs. ExPASy Swiss-Prot
Match: Q2V3H0 (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 143.3 bits (360), Expect = 5.7e-33
Identity = 75/182 (41.21%), Postives = 112/182 (61.54%), Query Frame = 0


Query: 182 IRLLD-LRDSKEAVYGALDAWVAWEQNFPIASLKQALAALEKEQQWHRVVQVIKWMLSKG 241
           +R+L  L + KEAVYGAL+ WVAWE  FPI +  +AL  L K  QWHRV+Q+ KWMLSKG
Sbjct: 102 VRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKG 161

Query: 242 QGTTMSVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLENL 301
           QG TM  Y  L+ A DMD RA+EA   W M + +   S+P +L   MI++Y  + + + +
Sbjct: 162 QGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDKV 221

Query: 302 VKLFKDLEAFGRKPPDKSIVQRVADAYEMLGLLEEKE----RVLVKYKDLFTGEKKASIK 359
           +++F D+E   +  PD+   +RVA A+  L   E ++    R L +YK ++   ++  +K
Sbjct: 222 IEVFADMEEL-KVSPDEDSARRVARAFRELNQEENRKLILRRYLSEYKYIYFNGERVRVK 281

[Close]

BLAST of Spg006309 vs. ExPASy Swiss-Prot
Match: Q8LG95 (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX=3702 GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.7e-30
Identity = 66/157 (42.04%), Postives = 97/157 (61.78%), Query Frame = 0


Query: 187 LRDSKEAVYGALDAWVAWEQNFPIASLKQALAALEKEQQWHRVVQVIKWMLSKGQGTTMS 246
           L + KE VYGALD+++AWE  FP+  +K+AL  LE E++W +++QV KWMLSKGQG TM 
Sbjct: 68  LSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSKGQGRTMG 127

Query: 247 VYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLENLVKLFKD 306
            Y  L+ AL  D+R +EA + W       L   P +    MISIYY+  M + L ++F D
Sbjct: 128 TYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQKLFEVFAD 187

Query: 307 LEAFGRKPPDKSIVQRVADAYEMLGLLEEKERVLVKY 344
           +E  G K P+ +IV  V   +  L + ++ E+++ KY
Sbjct: 188 MEELGVK-PNVAIVSMVGKVFVKLEMKDKYEKLMKKY 223

[Close]

BLAST of Spg006309 vs. ExPASy TrEMBL
Match: A0A6J1DNN5 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X3 OS=Momordica charantia OX=3673 GN=LOC111021690 PE=4 SV=1)

HSP 1 Score: 469.5 bits (1207), Expect = 1.3e-128
Identity = 249/372 (66.94%), Postives = 270/372 (72.58%), Query Frame = 0


Query: 1   MLIRRLHRAATWATPLLRDITVGQIMELGVSKLQVGNSFYCTMIQAQMCKQLADKDMKNK 60
           ML+RR HRA TW TPLLRD+T GQIM+LGVS+LQVGNS YCTM+QAQMC+QLAD+DMKNK
Sbjct: 1   MLVRRFHRATTWVTPLLRDLTAGQIMDLGVSRLQVGNSCYCTMVQAQMCQQLADRDMKNK 60

Query: 61  DINHNKALCQTSEQNTGDMRKHQIGENVSRKDKINFLVNTANSRDEMFAFGGQNALGDFL 120
           D+N++KALCQ SEQN GDMRKHQIGENVSRKDKINFLV T                    
Sbjct: 61  DVNNSKALCQRSEQNDGDMRKHQIGENVSRKDKINFLVAT-------------------- 120

Query: 121 VARSFIMEEDLDHLLWGRRSEGDNRGFSSPYAFSGEREIFMAGGISAFCWDLCCETYNGI 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 FIRLLDLRDSKEAVYGALDAWVAWEQNFPIASLKQALAALEKEQQWHRVVQVIKWMLSKG 240
              L+DLR SKEAVYGALDAWVAWEQNFPIASLKQ LA LEKEQQWHRVVQVIKWMLSKG
Sbjct: 181 ---LVDLRGSKEAVYGALDAWVAWEQNFPIASLKQVLAVLEKEQQWHRVVQVIKWMLSKG 240

Query: 241 QGTTMSVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLENL 300
           QGTTM VYGQLIRALDMDHRAEE+HKFWVMKIG+DLHSVPWQLCRSMISIYYRNKML+NL
Sbjct: 241 QGTTMRVYGQLIRALDMDHRAEESHKFWVMKIGADLHSVPWQLCRSMISIYYRNKMLDNL 289

Query: 301 VKLFKDLEAFGRKPPDKSIVQRVADAYEMLGLLEEKERVLVKYKDLFTGEKKASIKKYKR 360
           VKLFKDLEAFGRKPP+KSIVQRVADAYEMLGL EEKERVL KYKDLFT E+K  I+KY +
Sbjct: 301 VKLFKDLEAFGRKPPEKSIVQRVADAYEMLGLHEEKERVLEKYKDLFTDERKGPIQKYNK 289

Query: 361 ISSEKSKRKKKI 373
           IS EKSKR++K+
Sbjct: 361 ISFEKSKRRRKL 289

[Close]

BLAST of Spg006309 vs. ExPASy TrEMBL
Match: A0A6J1DM10 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021690 PE=4 SV=1)

HSP 1 Score: 469.5 bits (1207), Expect = 1.3e-128
Identity = 249/372 (66.94%), Postives = 270/372 (72.58%), Query Frame = 0


Query: 1   MLIRRLHRAATWATPLLRDITVGQIMELGVSKLQVGNSFYCTMIQAQMCKQLADKDMKNK 60
           ML+RR HRA TW TPLLRD+T GQIM+LGVS+LQVGNS YCTM+QAQMC+QLAD+DMKNK
Sbjct: 25  MLVRRFHRATTWVTPLLRDLTAGQIMDLGVSRLQVGNSCYCTMVQAQMCQQLADRDMKNK 84

Query: 61  DINHNKALCQTSEQNTGDMRKHQIGENVSRKDKINFLVNTANSRDEMFAFGGQNALGDFL 120
           D+N++KALCQ SEQN GDMRKHQIGENVSRKDKINFLV T                    
Sbjct: 85  DVNNSKALCQRSEQNDGDMRKHQIGENVSRKDKINFLVAT-------------------- 144

Query: 121 VARSFIMEEDLDHLLWGRRSEGDNRGFSSPYAFSGEREIFMAGGISAFCWDLCCETYNGI 180
                                                                       
Sbjct: 145 ------------------------------------------------------------ 204

Query: 181 FIRLLDLRDSKEAVYGALDAWVAWEQNFPIASLKQALAALEKEQQWHRVVQVIKWMLSKG 240
              L+DLR SKEAVYGALDAWVAWEQNFPIASLKQ LA LEKEQQWHRVVQVIKWMLSKG
Sbjct: 205 ---LVDLRGSKEAVYGALDAWVAWEQNFPIASLKQVLAVLEKEQQWHRVVQVIKWMLSKG 264

Query: 241 QGTTMSVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLENL 300
           QGTTM VYGQLIRALDMDHRAEE+HKFWVMKIG+DLHSVPWQLCRSMISIYYRNKML+NL
Sbjct: 265 QGTTMRVYGQLIRALDMDHRAEESHKFWVMKIGADLHSVPWQLCRSMISIYYRNKMLDNL 313

Query: 301 VKLFKDLEAFGRKPPDKSIVQRVADAYEMLGLLEEKERVLVKYKDLFTGEKKASIKKYKR 360
           VKLFKDLEAFGRKPP+KSIVQRVADAYEMLGL EEKERVL KYKDLFT E+K  I+KY +
Sbjct: 325 VKLFKDLEAFGRKPPEKSIVQRVADAYEMLGLHEEKERVLEKYKDLFTDERKGPIQKYNK 313

Query: 361 ISSEKSKRKKKI 373
           IS EKSKR++K+
Sbjct: 385 ISFEKSKRRRKL 313

[Close]

BLAST of Spg006309 vs. ExPASy TrEMBL
Match: A0A6J1HUZ4 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467059 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 3.0e-122
Identity = 241/359 (67.13%), Postives = 258/359 (71.87%), Query Frame = 0


Query: 1   MLIRRLHRAATWATPLLRDITVGQIMELGVSKLQVGNSFYCTMIQAQMCKQLADKDMKNK 60
           MLIRR HRAATWATPLLRD TVGQ+MELGV+KLQ+GNS YCTM+Q QM K+ ADKDM +K
Sbjct: 1   MLIRRFHRAATWATPLLRDTTVGQVMELGVNKLQIGNSCYCTMLQNQMPKRFADKDMTDK 60

Query: 61  DINHNKALCQTSEQNTGDMRKHQIGENVSRKDKINFLVNTANSRDEMFAFGGQNALGDFL 120
           D+N++K L QTSE+N GD+RKHQIGENVSRKDKINFLVNT                    
Sbjct: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKINFLVNT-------------------- 120

Query: 121 VARSFIMEEDLDHLLWGRRSEGDNRGFSSPYAFSGEREIFMAGGISAFCWDLCCETYNGI 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 FIRLLDLRDSKEAVYGALDAWVAWEQNFPIASLKQALAALEKEQQWHRVVQVIKWMLSKG 240
              L+DLRDSKEAVYGALDAWVAWEQ+FPIASLK ALA LEKE QWHRVVQVIKWMLSKG
Sbjct: 181 ---LMDLRDSKEAVYGALDAWVAWEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKG 240

Query: 241 QGTTMSVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLENL 300
           QGTTM+VYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLE+L
Sbjct: 241 QGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDL 276

Query: 301 VKLFKDLEAFGRKPPDKSIVQRVADAYEMLGLLEEKERVLVKYKDLFTGEKKASIKKYK 360
           VKLFKDLEAFGRKPP+KSIVQRVADA EMLGL+EEKERVLVKY  LFT EKK SIKKYK
Sbjct: 301 VKLFKDLEAFGRKPPEKSIVQRVADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYK 276

[Close]

BLAST of Spg006309 vs. ExPASy TrEMBL
Match: A0A6J1DJJ2 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021690 PE=4 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 3.4e-121
Identity = 242/372 (65.05%), Postives = 260/372 (69.89%), Query Frame = 0


Query: 1   MLIRRLHRAATWATPLLRDITVGQIMELGVSKLQVGNSFYCTMIQAQMCKQLADKDMKNK 60
           ML+RR HRA TW TPLLRD+T GQIM+LGVS+LQVGNS YCTM+QAQMC+QLAD+DMKNK
Sbjct: 25  MLVRRFHRATTWVTPLLRDLTAGQIMDLGVSRLQVGNSCYCTMVQAQMCQQLADRDMKNK 84

Query: 61  DINHNKALCQTSEQNTGDMRKHQIGENVSRKDKINFLVNTANSRDEMFAFGGQNALGDFL 120
                      SEQN GDMRKHQIGENVSRKDKINFLV T                    
Sbjct: 85  ----------RSEQNDGDMRKHQIGENVSRKDKINFLVAT-------------------- 144

Query: 121 VARSFIMEEDLDHLLWGRRSEGDNRGFSSPYAFSGEREIFMAGGISAFCWDLCCETYNGI 180
                                                                       
Sbjct: 145 ------------------------------------------------------------ 204

Query: 181 FIRLLDLRDSKEAVYGALDAWVAWEQNFPIASLKQALAALEKEQQWHRVVQVIKWMLSKG 240
              L+DLR SKEAVYGALDAWVAWEQNFPIASLKQ LA LEKEQQWHRVVQVIKWMLSKG
Sbjct: 205 ---LVDLRGSKEAVYGALDAWVAWEQNFPIASLKQVLAVLEKEQQWHRVVQVIKWMLSKG 264

Query: 241 QGTTMSVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLENL 300
           QGTTM VYGQLIRALDMDHRAEE+HKFWVMKIG+DLHSVPWQLCRSMISIYYRNKML+NL
Sbjct: 265 QGTTMRVYGQLIRALDMDHRAEESHKFWVMKIGADLHSVPWQLCRSMISIYYRNKMLDNL 303

Query: 301 VKLFKDLEAFGRKPPDKSIVQRVADAYEMLGLLEEKERVLVKYKDLFTGEKKASIKKYKR 360
           VKLFKDLEAFGRKPP+KSIVQRVADAYEMLGL EEKERVL KYKDLFT E+K  I+KY +
Sbjct: 325 VKLFKDLEAFGRKPPEKSIVQRVADAYEMLGLHEEKERVLEKYKDLFTDERKGPIQKYNK 303

Query: 361 ISSEKSKRKKKI 373
           IS EKSKR++K+
Sbjct: 385 ISFEKSKRRRKL 303

[Close]

BLAST of Spg006309 vs. ExPASy TrEMBL
Match: A0A6J1HGC4 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463832 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 5.7e-121
Identity = 239/359 (66.57%), Postives = 257/359 (71.59%), Query Frame = 0


Query: 1   MLIRRLHRAATWATPLLRDITVGQIMELGVSKLQVGNSFYCTMIQAQMCKQLADKDMKNK 60
           MLIRR HRAATWATPLLRD TVGQIMELGV+KLQ+GNS YCTM+Q QM K+  DKDM +K
Sbjct: 1   MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKDMTDK 60

Query: 61  DINHNKALCQTSEQNTGDMRKHQIGENVSRKDKINFLVNTANSRDEMFAFGGQNALGDFL 120
           D+N++K L QTSE+N GD+RKHQIGENVSRKDKI+FLVNT                    
Sbjct: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNT-------------------- 120

Query: 121 VARSFIMEEDLDHLLWGRRSEGDNRGFSSPYAFSGEREIFMAGGISAFCWDLCCETYNGI 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 FIRLLDLRDSKEAVYGALDAWVAWEQNFPIASLKQALAALEKEQQWHRVVQVIKWMLSKG 240
              L+DLRDSKEAVYGALDAWVAWEQ+FPIASLK ALA LEKE QWHRVVQVIKWMLSKG
Sbjct: 181 ---LMDLRDSKEAVYGALDAWVAWEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKG 240

Query: 241 QGTTMSVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLENL 300
           QGTTM+VYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLE+L
Sbjct: 241 QGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDL 276

Query: 301 VKLFKDLEAFGRKPPDKSIVQRVADAYEMLGLLEEKERVLVKYKDLFTGEKKASIKKYK 360
           VKLFK+LEAFGRKPP+KSIVQRVADA EMLGL+EEKERVLVKY  LFT EKK SIKKYK
Sbjct: 301 VKLFKNLEAFGRKPPEKSIVQRVADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYK 276

[Close]

BLAST of Spg006309 vs. TAIR 10
Match: AT1G04590.1 (BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 258.8 bits (660), Expect = 6.6e-69
Identity = 156/335 (46.57%), Postives = 186/335 (55.52%), Query Frame = 0


Query: 44  IQAQMCKQLADKDMKNKDINHNKALCQTSEQ----NTGDMRKHQIGENVSRKDKINFLVN 103
           +Q+   + +AD     K I  N+     S+     N  + RKHQIGEN+ +KDKI FLVN
Sbjct: 92  VQSMSYQFVADSHSSPKRIVKNEDEEDFSDSSKKGNAENPRKHQIGENIPKKDKIKFLVN 151

Query: 104 TANSRDEMFAFGGQNALGDFLVARSFIMEEDLDHLLWGRRSEGDNRGFSSPYAFSGEREI 163
           T                                                           
Sbjct: 152 T----------------------------------------------------------- 211

Query: 164 FMAGGISAFCWDLCCETYNGIFIRLLDLRDSKEAVYGALDAWVAWEQNFPIASLKQALAA 223
                                   LLD+ D+KEAVYGALDAWVAWE+NFPIASLK  +A+
Sbjct: 212 ------------------------LLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIAS 271

Query: 224 LEKEQQWHRVVQVIKWMLSKGQGTTMSVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSV 283
           LEKE QWHR+VQVIKW+LSKGQG TM  YGQLIRALDMD RAEEAH  W  K+G+DLHSV
Sbjct: 272 LEKEHQWHRMVQVIKWILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSV 331

Query: 284 PWQLCRSMISIYYRNKMLENLVKLFKDLEAFGRKPPDKSIVQRVADAYEMLGLLEEKERV 343
           PWQLC  M+ IY+RN ML+ LVKLFKDLE++ RKPPDK IVQ VADAYE+LG+L+EKERV
Sbjct: 332 PWQLCLQMMRIYFRNNMLQELVKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKERV 341

Query: 344 LVKYKDLFTGEKKASIKKYKRISSEKSKRKKKIDE 375
           + KY  L  G    S  K  R S +K K + +I E
Sbjct: 392 VTKYSHLLLG--TPSDDKPSRSSRKKKKPELRIPE 341

[Close]

BLAST of Spg006309 vs. TAIR 10
Match: AT1G04590.2 (BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18975.4); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 253.4 bits (646), Expect = 2.8e-67
Identity = 156/338 (46.15%), Postives = 186/338 (55.03%), Query Frame = 0


Query: 44  IQAQMCKQLADKDMKNKDINHNKALCQTSEQ----NTGDMRKHQIGENVSRKDKINFLVN 103
           +Q+   + +AD     K I  N+     S+     N  + RKHQIGEN+ +KDKI FLVN
Sbjct: 92  VQSMSYQFVADSHSSPKRIVKNEDEEDFSDSSKKGNAENPRKHQIGENIPKKDKIKFLVN 151

Query: 104 TANSRDEMFAFGGQNALGDFLVARSFIMEEDLDHLLWGRRSEGDNRGFSSPYAFSGEREI 163
           T                                                           
Sbjct: 152 T----------------------------------------------------------- 211

Query: 164 FMAGGISAFCWDLCCETYNGIFIRLLDLRDSKEAVYGALDAWVAWEQNFPIASLKQALAA 223
                                   LLD+ D+KEAVYGALDAWVAWE+NFPIASLK  +A+
Sbjct: 212 ------------------------LLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIAS 271

Query: 224 LEKEQQWHRVVQVIKWMLSKGQGTTMSVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSV 283
           LEKE QWHR+VQVIKW+LSKGQG TM  YGQLIRALDMD RAEEAH  W  K+G+DLHSV
Sbjct: 272 LEKEHQWHRMVQVIKWILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSV 331

Query: 284 PWQLCRSMISIYYRNKMLENLV---KLFKDLEAFGRKPPDKSIVQRVADAYEMLGLLEEK 343
           PWQLC  M+ IY+RN ML+ LV   KLFKDLE++ RKPPDK IVQ VADAYE+LG+L+EK
Sbjct: 332 PWQLCLQMMRIYFRNNMLQELVKVMKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEK 344

Query: 344 ERVLVKYKDLFTGEKKASIKKYKRISSEKSKRKKKIDE 375
           ERV+ KY  L  G    S  K  R S +K K + +I E
Sbjct: 392 ERVVTKYSHLLLG--TPSDDKPSRSSRKKKKPELRIPE 344

[Close]

BLAST of Spg006309 vs. TAIR 10
Match: AT4G18975.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 143.3 bits (360), Expect = 4.0e-34
Identity = 75/182 (41.21%), Postives = 112/182 (61.54%), Query Frame = 0


Query: 182 IRLLD-LRDSKEAVYGALDAWVAWEQNFPIASLKQALAALEKEQQWHRVVQVIKWMLSKG 241
           +R+L  L + KEAVYGAL+ WVAWE  FPI +  +AL  L K  QWHRV+Q+ KWMLSKG
Sbjct: 102 VRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKG 161

Query: 242 QGTTMSVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLENL 301
           QG TM  Y  L+ A DMD RA+EA   W M + +   S+P +L   MI++Y  + + + +
Sbjct: 162 QGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDKV 221

Query: 302 VKLFKDLEAFGRKPPDKSIVQRVADAYEMLGLLEEKE----RVLVKYKDLFTGEKKASIK 359
           +++F D+E   +  PD+   +RVA A+  L   E ++    R L +YK ++   ++  +K
Sbjct: 222 IEVFADMEEL-KVSPDEDSARRVARAFRELNQEENRKLILRRYLSEYKYIYFNGERVRVK 281

[Close]

BLAST of Spg006309 vs. TAIR 10
Match: AT4G18975.2 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 143.3 bits (360), Expect = 4.0e-34
Identity = 75/182 (41.21%), Postives = 112/182 (61.54%), Query Frame = 0


Query: 182 IRLLD-LRDSKEAVYGALDAWVAWEQNFPIASLKQALAALEKEQQWHRVVQVIKWMLSKG 241
           +R+L  L + KEAVYGAL+ WVAWE  FPI +  +AL  L K  QWHRV+Q+ KWMLSKG
Sbjct: 75  VRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKG 134

Query: 242 QGTTMSVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLENL 301
           QG TM  Y  L+ A DMD RA+EA   W M + +   S+P +L   MI++Y  + + + +
Sbjct: 135 QGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDKV 194

Query: 302 VKLFKDLEAFGRKPPDKSIVQRVADAYEMLGLLEEKE----RVLVKYKDLFTGEKKASIK 359
           +++F D+E   +  PD+   +RVA A+  L   E ++    R L +YK ++   ++  +K
Sbjct: 195 IEVFADMEEL-KVSPDEDSARRVARAFRELNQEENRKLILRRYLSEYKYIYFNGERVRVK 254

[Close]

BLAST of Spg006309 vs. TAIR 10
Match: AT4G18975.3 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 143.3 bits (360), Expect = 4.0e-34
Identity = 75/182 (41.21%), Postives = 112/182 (61.54%), Query Frame = 0


Query: 182 IRLLD-LRDSKEAVYGALDAWVAWEQNFPIASLKQALAALEKEQQWHRVVQVIKWMLSKG 241
           +R+L  L + KEAVYGAL+ WVAWE  FPI +  +AL  L K  QWHRV+Q+ KWMLSKG
Sbjct: 102 VRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKG 161

Query: 242 QGTTMSVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLENL 301
           QG TM  Y  L+ A DMD RA+EA   W M + +   S+P +L   MI++Y  + + + +
Sbjct: 162 QGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDKV 221

Query: 302 VKLFKDLEAFGRKPPDKSIVQRVADAYEMLGLLEEKE----RVLVKYKDLFTGEKKASIK 359
           +++F D+E   +  PD+   +RVA A+  L   E ++    R L +YK ++   ++  +K
Sbjct: 222 IEVFADMEEL-KVSPDEDSARRVARAFRELNQEENRKLILRRYLSEYKYIYFNGERVRVK 281

The following BLAST results are available for this feature:

BLAST of Spg006309 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154414.1	2.6e-128	66.94	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
XP_022154416.1	2.6e-128	66.94	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X3 ...	[more]
XP_038887984.1	1.3e-122	66.31	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
XP_022967610.1	6.3e-122	67.13	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
KAG6571702.1	1.1e-121	67.13	Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argy...	[more]

BLAST of Spg006309 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2V3H0	5.7e-33	41.21	Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidop...	[more]
Q8LG95	7.7e-30	42.04	Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX...	[more]

BLAST of Spg006309 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNN5	1.3e-128	66.94	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X3 ...	[more]
A0A6J1DM10	1.3e-128	66.94	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
A0A6J1HUZ4	3.0e-122	67.13	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
A0A6J1DJJ2	3.4e-121	65.05	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X2 ...	[more]
A0A6J1HGC4	5.7e-121	66.57	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]

BLAST of Spg006309 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04590.1	6.6e-69	46.57	BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) super...	[more]
AT1G04590.2	2.8e-67	46.15	BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) super...	[more]
AT4G18975.1	4.0e-34	41.21	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18975.2	4.0e-34	41.21	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18975.3	4.0e-34	41.21	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 183..356 e-value: 2.3E-8 score: 35.6
None	No IPR available	PANTHER	PTHR47603	PPR CONTAINING-LIKE PROTEIN	coord: 5..100
None	No IPR available	PANTHER	PTHR47603:SF1	PPR CONTAINING-LIKE PROTEIN	coord: 5..100
None	No IPR available	PANTHER	PTHR47603	PPR CONTAINING-LIKE PROTEIN	coord: 183..370
None	No IPR available	PANTHER	PTHR47603:SF1	PPR CONTAINING-LIKE PROTEIN	coord: 183..370

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006309.1	Spg006309.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding