Spg006272 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006272
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold4: 4751750 .. 4755769 (+)
RNA-Seq Expression	Spg006272
Synteny	Spg006272

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGACTTTAGGGAAGCAAATGAGTGTTCCCTTAAGTGGTTACTCCGAGTCTTGAACAAAGGGCCCTACCCTCTCAATGGCACGAGAGGGTTTTCTGTTTGATGGTTGGACCACAAACAGGTTGTTCATTAGAGGAGAATTGGTACTTAAGGAAATAGAGGTAACCCAGGGGTAAAACGGTAATTTGACCCAGCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTAGATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGCAACTGTGAGTCTATAGTGGAATGTACACACAGTTAACGAATATTGATTAATGTGGTTAATGAGTTTGACCAATTAATCTCACATCGTTGGAGCTTATGATCTGCAGGTCCATTAGGTCCCACTGGTAGCTCGTAAAGTAATTTGAGGCAACTAAGTAATAAATGTAAATTGAAAATGTTCAATTTACTAAGGGAAACAAATATAATATATATTGATATATTATTATGAGAGAAATTAATATTTGAAGAAGTTCAAATATAAATTTATGGAAGATTGAAGGAGTTCAAATAATAAATTAATTAATTTAAGTCCTAAAATGTGTTTGGGCAAAATTAATTAATTCAAGGCTGGAAATTAAATATGTGATATTTAATTGGTGGTTAATTAATTAAAGAATTCATTAACCATGAATTAATCAATTATGTAAATAATTAATCACTTAAGGAAGTGATTAATCATTTATGGGAATGATCTAATCACTTATGGAAGTAATTAGTCATTTGTGGAAAAGATTAATCAATTGGGGAATTGATTGATCATGATTGATTAATTAAGGAATAAAGATTGAATCAATTTTGGAAAAGATTGATTTAATTGAATATTTTATTCATGGCCTCTCTTCTATAAATAGAACACTAGACCTAATTGGTCATGACACTTGACACTCTTGAAAGACAAGACCTAGAATTCTCTCTAGCCTCCCTCTTAGAGAAAGACTCCCACAAGTCTTTTGCCTCCTAGACTTAGAGACATACCGGTGTAACCTCTGTGGTTATTGTGTCAATCAAGAAGGAATTTCCAGCGAAGAAAACCTTAAAGCGGCTGCTGCGTTTTCGTTTGTGGAGCGTCGTTGGCGAAGAACGGTCAAGTCTACAACGGAGGTTTGTAACGGTTCTTCCCCTTTTCTTTAGAAAAGTTTTTAAAATAAATTTAGATTTATTTTAGCATGTTTAAACCGTTTTACAGCGACTTTAAAGTTAGTTTAAAGTTTTGTTTGAGTTATCGTAACGGTATTTTAATGTTAATTAATATACGGCGTAAGGTCCAATCGATGCGCTTCCGCTGCGTGGGGACTTTTATTCCCTTCAGTATATTGTAAGACATGTTTCAATGCACTTAAATGCTTCAGGGAGGGGTGTCCTAATCTCTCATGCCATAGGCTACCAGAAGAAGCAGTAACAGAATTGCAAACAATGTTATAGCCATTATTTAGTAGTAAATGTGACTGTTCCTGAGAAATACGTGTACCAGAGTGTATGATGTAAAGCCCTTGCCACAGCTCAGCCTTGCCAATCGTCTTCAAAGAGGACTTGGCCTGAATGATGCAGCAATTTCTAGCAAATTGAACAGCAAAAGGCATGGAAGCAGTTAGGGCACTGACAGAAACAAGATTGAAACGAAAAGATGGTATGTACATCACATTCCGAAGCAAGATATCAGGATTCAATTGCACATCACCAATAGAATCAACATAAATGCGATCATGATTGGGTAAAGAAACAGTAACACCAACTACTTTCTTGATGGAGGTAAAGGTAGACCGAACATAGCAGATGTGGGTGGATGCACCCGAATCAATGACCCAAGAACTAGCATCTGGAAAATGAGTGTGAGAGACAAAACAAGTACCTGCGACATGGTTGGAAGAGCCAGACGCAGCATCAGGTGTGGTGTTGGCCTTCGCAAGATGAGACTGTAATAAGGTCAATAACTCCTGACATTGTTCGGTAGTGAATGTAGGAGTAGCACTGGGAGCAATTGAAGATCCAGTGGAAGTGGTAGTACTTGAATCTGTCTTTGCAACATTCTTTTGATTAGTACGATAACCAGGTGGGTAGCCATGTATTTTGTAACAACGGTCAATAGTATGGCCAAGGATGTTGCAATGAGTGCAGAACGGTCTGTCTTTCTTCTTGGAGGTTCCTTGATTTCGTGGATTATGAGCGGTGGTAGTGTTCTTTACTAACATTGCAGCAGCAGAAGAAGCGGTGACAGGACTGAGGGCAGGAATCGCGCGTTGTTCTACTTATTGAACAACAAGAGAAAATGCACGAGACGGTTCAGGCTCCATTAGAAGGAGTTGGGTACGAACCTGGGCAAAAGATTCATTGAGCCCCATCAAGAAGATCATTACGTGCTCTGTCTGAAAGAAATTGAGAAGATCTCTAACTCCACCGTAATTGCAGCGTCCGCAAGAGCACGAGGGGCGGTAAGAAACCAATTCATTCCACAGTGTCTTTAATTTCGCATAGTATGTGGTAACAGAATCCTGATTTTGCTGGAGATTGGATAGCTCTCGGCGAATTTGGAAAACACGAGGCCTATTCTTGCGCTGGTAGCGCTGTTGGAGATCTGTCCAAATTTCAGCAGCGGTATCAGCAAAATTCACGCTAGATGAGATTTCGGCAGAAAGAGAATTTAAGATCCACGAAGTCACGACACTATTGCAAATGAGCCAGGAACCAAGGAGTTCAGCATCAGATGGCCGAGGAATCGATCCATCAACAAAACCAAACTTGTTCTTCACAGTTAATCCAATTGTCATGGCCTGACTCCATGAAGTGTAATTGGTTTCTGTCAACAAATTTGAAACAAGAACAATACTCGTGCTATCAGAGTGATGCAGGAAATAAGGATCAGCATAAAGATGAAGGACGGATTGAGTAGCTGAGGAAGCGGTGGCCTGAGACGAAGAATTAGGCACCGGAATCTCAGAATTGTCCGTCATGATGAACAACCGGAGGACAAGGAGGACTTTCAGGGAATTTGAAAATCTGATACCATATTAAGATTCCAAGAAAGTAAATAACACTTGCCCTTGATTTATTATTCACAAGAAGGCATATAAATAGCCATTAGTACAAGGGAAGTTACAAGGGAAGTTAGCTGAAGACTAACAGACTAACAAGTGAATAACCAAATATAACAGAAATATATCCTAATAAAAAGTACTTTTTTAGTTTTCAAAACATGATTTATGACTTTGAAAATATGAAAAGAAAGTAGATAAAAAAAACAAATAAACATATAGATGGAAGTAGTGATTATATAAACTTAATTTCCAAAAACCAAAATCAAATGTTTATCAAACGGGACCTTAACAATCATGTCTTAATTTTCCGAGTTGGCTTAATTCTCTTATAAGTGAAGATTATCACCCTGGTTTAAGTTTGTATCTTTATAAAATTCTCTTTCTTCTAAAAAAAAATCATAACTTGTAATTATTGAATTCGAAATAATAATGAATTAAAATTAGACTAAATATATAGATAATCATATAAAAGTTCCATAGTCCAAACTAATAATTTAAGCTTCAAAGGTTGAATAGTCTACCAACCAAATGTGTAAAAAAAAAAAAAAAATAGTTGAAGGAGAGATATTTAAACATGAGAAATAATAATTGAAAAATAATCTACCAACCAAATTTGTAAAAAAATAAATAAATAGTATATATAATCAAATCTCTTCTAATTTAATTTTCTTGATTCATTCTTTCATGCATTATCATAATCTTGATTCTTCTATTATCGTTTTTAGGGCATCGATTGCATCATGAATTGACATTGTTGCCTTCGCGAGAGGAAGATTTAGACAAAATTGCACATGACAAATTCTTCACTATCAATTCACATGATTTCAGAGAGATCGTAAGAGGAGTACCTCCCTTCCCGAATTATTCAAGTTACGTCTGA

mRNA sequence

ATGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGACTTTAGGGAAGCAAATGAGTCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTAGATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGCAACTGTCCATTAGGTCCCACTGCGAAGAAAACCTTAAAGCGGCTGCTGCGTTTTCGTTTGTGGAGCGTCGTTGGCGAAGAACGGTCAAGTCTACAACGGAGGTTTGTAACGGGCATCGATTGCATCATGAATTGACATTGTTGCCTTCGCGAGAGGAAGATTTAGACAAAATTGCACATGACAAATTCTTCACTATCAATTCACATGATTTCAGAGAGATCGTAAGAGGAGTACCTCCCTTCCCGAATTATTCAAGTTACGTCTGA

Coding sequence (CDS)

ATGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGACTTTAGGGAAGCAAATGAGTCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTAGATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGCAACTGTCCATTAGGTCCCACTGCGAAGAAAACCTTAAAGCGGCTGCTGCGTTTTCGTTTGTGGAGCGTCGTTGGCGAAGAACGGTCAAGTCTACAACGGAGGTTTGTAACGGGCATCGATTGCATCATGAATTGACATTGTTGCCTTCGCGAGAGGAAGATTTAGACAAAATTGCACATGACAAATTCTTCACTATCAATTCACATGATTTCAGAGAGATCGTAAGAGGAGTACCTCCCTTCCCGAATTATTCAAGTTACGTCTGA

Protein sequence

MGSWEHNRTRWNSLLPDFREANESGVTDTREGLTSRYWSRSVDTENMSAVRRVQLSIRSHCEENLKAAAAFSFVERRWRRTVKSTTEVCNGHRLHHELTLLPSREEDLDKIAHDKFFTINSHDFREIVRGVPPFPNYSSYV

Homology

[Close]

BLAST of Spg006272 vs. NCBI nr
Match: XP_023006010.1 (uncharacterized protein LOC111498887 [Cucurbita maxima])

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-05
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 93  RLHHELTLLPSREEDLDKIAHDKFFTINSHDFREIVRGVPPFPNYSSYV 142
           ++H  L L PS+EE+L +I HD+FF+I S DFR+I+ G+P FPN S +V
Sbjct: 112 KMHRVLKLSPSQEEELGQIQHDRFFSIISQDFRDIITGLPSFPNNSIFV 160

[Close]

BLAST of Spg006272 vs. NCBI nr
Match: XP_022958857.1 (uncharacterized protein LOC111460011 [Cucurbita moschata])

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-05
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 93  RLHHELTLLPSREEDLDKIAHDKFFTINSHDFREIVRGVPPFPNYSSYV 142
           ++H  L L PS+EE+L +I HD+FF+I S DFR+I+ G+P FPN S +V
Sbjct: 112 QMHRVLKLSPSQEEELGQIQHDRFFSIISQDFRDIITGLPSFPNNSIFV 160

[Close]

BLAST of Spg006272 vs. NCBI nr
Match: XP_023548334.1 (uncharacterized protein LOC111807002 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-05
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 93  RLHHELTLLPSREEDLDKIAHDKFFTINSHDFREIVRGVPPFPNYSSYV 142
           ++H  L L PS+EE+L +I HD+FF+I S DFR+IV G+P FPN S +V
Sbjct: 112 QMHRVLKLSPSQEEELGQIQHDRFFSIISQDFRDIVTGLPSFPNDSIFV 160

[Close]

BLAST of Spg006272 vs. NCBI nr
Match: KAG7013721.1 (hypothetical protein SDJN02_23888, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.8 bits (138), Expect = 8.9e-05
Identity = 25/49 (51.02%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 93  RLHHELTLLPSREEDLDKIAHDKFFTINSHDFREIVRGVPPFPNYSSYV 142
           ++H  L L PS+EE+L +I HD++F+I S DFR+I+ G+P FPN S+ V
Sbjct: 112 QMHRVLKLSPSQEEELGQIQHDRYFSIISQDFRDIITGLPSFPNNSNAV 160

[Close]

BLAST of Spg006272 vs. ExPASy TrEMBL
Match: A0A6J1KZ05 (uncharacterized protein LOC111498887 OS=Cucurbita maxima OX=3661 GN=LOC111498887 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.7e-06
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 93  RLHHELTLLPSREEDLDKIAHDKFFTINSHDFREIVRGVPPFPNYSSYV 142
           ++H  L L PS+EE+L +I HD+FF+I S DFR+I+ G+P FPN S +V
Sbjct: 112 KMHRVLKLSPSQEEELGQIQHDRFFSIISQDFRDIITGLPSFPNNSIFV 160

[Close]

BLAST of Spg006272 vs. ExPASy TrEMBL
Match: A0A6J1H2Z8 (uncharacterized protein LOC111460011 OS=Cucurbita moschata OX=3662 GN=LOC111460011 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 93  RLHHELTLLPSREEDLDKIAHDKFFTINSHDFREIVRGVPPFPNYSSYV 142
           ++H  L L PS+EE+L +I HD+FF+I S DFR+I+ G+P FPN S +V
Sbjct: 112 QMHRVLKLSPSQEEELGQIQHDRFFSIISQDFRDIITGLPSFPNNSIFV 160

The following BLAST results are available for this feature:

BLAST of Spg006272 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023006010.1	1.8e-05	53.06	uncharacterized protein LOC111498887 [Cucurbita maxima]	[more]
XP_022958857.1	2.4e-05	53.06	uncharacterized protein LOC111460011 [Cucurbita moschata]	[more]
XP_023548334.1	2.4e-05	55.10	uncharacterized protein LOC111807002 [Cucurbita pepo subsp. pepo]	[more]
KAG7013721.1	8.9e-05	51.02	hypothetical protein SDJN02_23888, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Spg006272 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg006272 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KZ05	8.7e-06	53.06	uncharacterized protein LOC111498887 OS=Cucurbita maxima OX=3661 GN=LOC111498887...	[more]
A0A6J1H2Z8	1.1e-05	53.06	uncharacterized protein LOC111460011 OS=Cucurbita moschata OX=3662 GN=LOC1114600...	[more]

BLAST of Spg006272 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006272.1	Spg006272.1	mRNA