Spg006252 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006252
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Histidine kinase
Location	scaffold4: 4605443 .. 4605868 (-)
RNA-Seq Expression	Spg006252
Synteny	Spg006252

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCAGAATTCTAAGTTCTCTTATTCTAAGGTCAGATTACCCGCTGGGTTCAAGGCGAAGAGGGCCAAGGAGCATTTCCATGGCCAGCGGTGGAGTAACCTTCTTTATCTCTTGCCATTGGGCTTAATTTTGGTTCTGGGTCTTTGGTCTATTTTTAGTCTTTGTGGTGGGAATTCAGTTCGGGAAAGGGAGCTTCCCGATACGTGTAAAGAGAAGGCCTGGAGCTTGCTGAAGCATTTCAATGTCAGCGAGAGTCAGTTTCATGCTTTGGCTTCATTCTTCTTTCATTCAGATCAGGTACTCTTTCTTGAGCTCTCTCACTATTTGATCTTACTTTCTCTTCCTAGATGTTTCCAATCACGAGCTTTCAACTTTCCTCAAGATAAGAGTACAGCTCGTGATGATAATGGCTATATGCGATGA

mRNA sequence

ATGTCTCAGAATTCTAAGTTCTCTTATTCTAAGGTCAGATTACCCGCTGGGTTCAAGGCGAAGAGGGCCAAGGAGCATTTCCATGGCCAGCGGTGGAGTAACCTTCTTTATCTCTTGCCATTGGGCTTAATTTTGGTTCTGGGTCTTTGGTCTATTTTTAGTCTTTGTGGTGGGAATTCAGTTCGGGAAAGGGAGCTTCCCGATACGTGTAAAGAGAAGGCCTGGAGCTTGCTGAAGCATTTCAATGTCAGCGAGAGTCAGTTTCATGCTTTGGCTTCATTCTTCTTTCATTCAGATCAGGTACTCTTTCTTGAGCTCTCTCACTATTTGATCTTACTTTCTCTTCCTAGATGTTTCCAATCACGAGCTTTCAACTTTCCTCAAGATAAGAGTACAGCTCGTGATGATAATGGCTATATGCGATGA

Coding sequence (CDS)

ATGTCTCAGAATTCTAAGTTCTCTTATTCTAAGGTCAGATTACCCGCTGGGTTCAAGGCGAAGAGGGCCAAGGAGCATTTCCATGGCCAGCGGTGGAGTAACCTTCTTTATCTCTTGCCATTGGGCTTAATTTTGGTTCTGGGTCTTTGGTCTATTTTTAGTCTTTGTGGTGGGAATTCAGTTCGGGAAAGGGAGCTTCCCGATACGTGTAAAGAGAAGGCCTGGAGCTTGCTGAAGCATTTCAATGTCAGCGAGAGTCAGTTTCATGCTTTGGCTTCATTCTTCTTTCATTCAGATCAGGTACTCTTTCTTGAGCTCTCTCACTATTTGATCTTACTTTCTCTTCCTAGATGTTTCCAATCACGAGCTTTCAACTTTCCTCAAGATAAGAGTACAGCTCGTGATGATAATGGCTATATGCGATGA

Protein sequence

MSQNSKFSYSKVRLPAGFKAKRAKEHFHGQRWSNLLYLLPLGLILVLGLWSIFSLCGGNSVRERELPDTCKEKAWSLLKHFNVSESQFHALASFFFHSDQVLFLELSHYLILLSLPRCFQSRAFNFPQDKSTARDDNGYMR

Homology

[Close]

BLAST of Spg006252 vs. NCBI nr
Match: KAG6589107.1 (Histidine kinase 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.2 bits (448), Expect = 1.0e-40
Identity = 84/105 (80.00%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 1   MSQNSKFSYSKVRLPAGFKAKRAKEHFHGQRWSNLLYLLPLGLILVLGLWSIFSLCGGNS 60
           MSQNSK S S V LPAG KAKRA+EHFHGQRWSNLLYLLP G+IL++GLW I SLC GNS
Sbjct: 1   MSQNSKLSCSNVILPAGLKAKRAREHFHGQRWSNLLYLLPFGVILIVGLWYILSLCDGNS 60

Query: 61  VRERELPDTCKEKAWSLLKHFNVSESQFHALASFFFHSDQVLFLE 106
           VRE E+PDTCKEKAW+LLKH+NVSESQFHALASFFFHSDQ   L+
Sbjct: 61  VREVEIPDTCKEKAWNLLKHYNVSESQFHALASFFFHSDQAASLQ 105

[Close]

BLAST of Spg006252 vs. NCBI nr
Match: KAG7022815.1 (Histidine kinase 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.2 bits (448), Expect = 1.0e-40
Identity = 84/105 (80.00%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 1   MSQNSKFSYSKVRLPAGFKAKRAKEHFHGQRWSNLLYLLPLGLILVLGLWSIFSLCGGNS 60
           MSQNSK S S V LPAG KAKRA+EHFHGQRWSNLLYLLP G+IL++GLW I SLC GNS
Sbjct: 1   MSQNSKLSCSNVILPAGLKAKRAREHFHGQRWSNLLYLLPFGVILIVGLWYILSLCDGNS 60

Query: 61  VRERELPDTCKEKAWSLLKHFNVSESQFHALASFFFHSDQVLFLE 106
           VRE E+PDTCKEKAW+LLKH+NVSESQFHALASFFFHSDQ   L+
Sbjct: 61  VREVEIPDTCKEKAWNLLKHYNVSESQFHALASFFFHSDQAASLQ 105

[Close]

BLAST of Spg006252 vs. NCBI nr
Match: XP_022928260.1 (histidine kinase 2 isoform X2 [Cucurbita moschata])

HSP 1 Score: 177.2 bits (448), Expect = 1.0e-40
Identity = 84/105 (80.00%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 1   MSQNSKFSYSKVRLPAGFKAKRAKEHFHGQRWSNLLYLLPLGLILVLGLWSIFSLCGGNS 60
           MSQNSK S S V LPAG KAKRA+EHFHGQRWSNLLYLLP G+IL++GLW I SLC GNS
Sbjct: 1   MSQNSKLSCSNVILPAGLKAKRAREHFHGQRWSNLLYLLPFGVILIVGLWYILSLCDGNS 60

Query: 61  VRERELPDTCKEKAWSLLKHFNVSESQFHALASFFFHSDQVLFLE 106
           VRE E+PDTCKEKAW+LLKH+NVSESQFHALASFFFHSDQ   L+
Sbjct: 61  VREVEIPDTCKEKAWNLLKHYNVSESQFHALASFFFHSDQAASLQ 105

[Close]

BLAST of Spg006252 vs. NCBI nr
Match: XP_022928257.1 (histidine kinase 2 isoform X1 [Cucurbita moschata] >XP_022928258.1 histidine kinase 2 isoform X1 [Cucurbita moschata])

HSP 1 Score: 177.2 bits (448), Expect = 1.0e-40
Identity = 84/105 (80.00%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 1   MSQNSKFSYSKVRLPAGFKAKRAKEHFHGQRWSNLLYLLPLGLILVLGLWSIFSLCGGNS 60
           MSQNSK S S V LPAG KAKRA+EHFHGQRWSNLLYLLP G+IL++GLW I SLC GNS
Sbjct: 1   MSQNSKLSCSNVILPAGLKAKRAREHFHGQRWSNLLYLLPFGVILIVGLWYILSLCDGNS 60

Query: 61  VRERELPDTCKEKAWSLLKHFNVSESQFHALASFFFHSDQVLFLE 106
           VRE E+PDTCKEKAW+LLKH+NVSESQFHALASFFFHSDQ   L+
Sbjct: 61  VREVEIPDTCKEKAWNLLKHYNVSESQFHALASFFFHSDQAASLQ 105

[Close]

BLAST of Spg006252 vs. NCBI nr
Match: XP_023529579.1 (histidine kinase 2-like [Cucurbita pepo subsp. pepo] >XP_023529580.1 histidine kinase 2-like [Cucurbita pepo subsp. pepo] >XP_023529581.1 histidine kinase 2-like [Cucurbita pepo subsp. pepo] >XP_023529582.1 histidine kinase 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 175.6 bits (444), Expect = 2.9e-40
Identity = 83/105 (79.05%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MSQNSKFSYSKVRLPAGFKAKRAKEHFHGQRWSNLLYLLPLGLILVLGLWSIFSLCGGNS 60
           MSQNSK S S V LPAG KAKRA+EHFHGQRWSNLLYLLP G+IL++GLW I SLC GNS
Sbjct: 1   MSQNSKLSCSNVILPAGLKAKRAREHFHGQRWSNLLYLLPFGVILIVGLWYILSLCDGNS 60

Query: 61  VRERELPDTCKEKAWSLLKHFNVSESQFHALASFFFHSDQVLFLE 106
            RE E+PDTCKEKAW+LLKH+NVSESQFHALASFFFHSDQ   L+
Sbjct: 61  AREVEIPDTCKEKAWNLLKHYNVSESQFHALASFFFHSDQAASLQ 105

[Close]

BLAST of Spg006252 vs. ExPASy TrEMBL
Match: A0A6J1EJE1 (Histidine kinase OS=Cucurbita moschata OX=3662 GN=LOC111435146 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.9e-41
Identity = 84/105 (80.00%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 1   MSQNSKFSYSKVRLPAGFKAKRAKEHFHGQRWSNLLYLLPLGLILVLGLWSIFSLCGGNS 60
           MSQNSK S S V LPAG KAKRA+EHFHGQRWSNLLYLLP G+IL++GLW I SLC GNS
Sbjct: 1   MSQNSKLSCSNVILPAGLKAKRAREHFHGQRWSNLLYLLPFGVILIVGLWYILSLCDGNS 60

Query: 61  VRERELPDTCKEKAWSLLKHFNVSESQFHALASFFFHSDQVLFLE 106
           VRE E+PDTCKEKAW+LLKH+NVSESQFHALASFFFHSDQ   L+
Sbjct: 61  VREVEIPDTCKEKAWNLLKHYNVSESQFHALASFFFHSDQAASLQ 105

[Close]

BLAST of Spg006252 vs. ExPASy TrEMBL
Match: A0A6J1ER81 (Histidine kinase OS=Cucurbita moschata OX=3662 GN=LOC111435146 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.9e-41
Identity = 84/105 (80.00%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 1   MSQNSKFSYSKVRLPAGFKAKRAKEHFHGQRWSNLLYLLPLGLILVLGLWSIFSLCGGNS 60
           MSQNSK S S V LPAG KAKRA+EHFHGQRWSNLLYLLP G+IL++GLW I SLC GNS
Sbjct: 1   MSQNSKLSCSNVILPAGLKAKRAREHFHGQRWSNLLYLLPFGVILIVGLWYILSLCDGNS 60

Query: 61  VRERELPDTCKEKAWSLLKHFNVSESQFHALASFFFHSDQVLFLE 106
           VRE E+PDTCKEKAW+LLKH+NVSESQFHALASFFFHSDQ   L+
Sbjct: 61  VREVEIPDTCKEKAWNLLKHYNVSESQFHALASFFFHSDQAASLQ 105

[Close]

BLAST of Spg006252 vs. ExPASy TrEMBL
Match: A0A6J1JPU8 (Histidine kinase OS=Cucurbita maxima OX=3661 GN=LOC111486406 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.6e-37
Identity = 80/105 (76.19%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 1   MSQNSKFSYSKVRLPAGFKAKRAKEHFHGQRWSNLLYLLPLGLILVLGLWSIFSLCGGNS 60
           MSQNSK S S V LPAGFKAKRA+EHFHGQR SNLLY LP G+IL++GL  I SLC GNS
Sbjct: 1   MSQNSKLSCSNVILPAGFKAKRAREHFHGQRCSNLLYPLPFGVILIVGLCYILSLCDGNS 60

Query: 61  VRERELPDTCKEKAWSLLKHFNVSESQFHALASFFFHSDQVLFLE 106
           VRE E+PDTCKEKAW++LKH+NVSESQFHALASFF HSDQ   L+
Sbjct: 61  VREVEIPDTCKEKAWNMLKHYNVSESQFHALASFFIHSDQAASLQ 105

[Close]

BLAST of Spg006252 vs. ExPASy TrEMBL
Match: A0A6J1JNY0 (Histidine kinase OS=Cucurbita maxima OX=3661 GN=LOC111486406 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.6e-37
Identity = 80/105 (76.19%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 1   MSQNSKFSYSKVRLPAGFKAKRAKEHFHGQRWSNLLYLLPLGLILVLGLWSIFSLCGGNS 60
           MSQNSK S S V LPAGFKAKRA+EHFHGQR SNLLY LP G+IL++GL  I SLC GNS
Sbjct: 1   MSQNSKLSCSNVILPAGFKAKRAREHFHGQRCSNLLYPLPFGVILIVGLCYILSLCDGNS 60

Query: 61  VRERELPDTCKEKAWSLLKHFNVSESQFHALASFFFHSDQVLFLE 106
           VRE E+PDTCKEKAW++LKH+NVSESQFHALASFF HSDQ   L+
Sbjct: 61  VREVEIPDTCKEKAWNMLKHYNVSESQFHALASFFIHSDQAASLQ 105

[Close]

BLAST of Spg006252 vs. ExPASy TrEMBL
Match: A0A6J1C2P9 (Histidine kinase OS=Momordica charantia OX=3673 GN=LOC111007822 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.1e-35
Identity = 78/105 (74.29%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 1   MSQNSKFSYSKVRLPAGFKAKRAKEHFHGQRWSNLLYLLPLGLILVLGLWSIFSLCGGNS 60
           MSQNSKF  SKVRLPAGF+AKRAKE FHGQRWSNLLYLLP G+IL+LGLWS+FS C  NS
Sbjct: 1   MSQNSKFFCSKVRLPAGFRAKRAKERFHGQRWSNLLYLLPFGVILILGLWSMFSFCDENS 60

Query: 61  VRERELPDTCKEKAWSLLKHFNVSESQFHALASFFFHSDQVLFLE 106
           V E  +PD C+EKA +LL+HFNVSESQ HALAS FF+SDQ   L+
Sbjct: 61  VGEVGIPDMCEEKARNLLQHFNVSESQLHALASLFFYSDQTASLQ 105

The following BLAST results are available for this feature:

BLAST of Spg006252 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589107.1	1.0e-40	80.00	Histidine kinase 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7022815.1	1.0e-40	80.00	Histidine kinase 2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022928260.1	1.0e-40	80.00	histidine kinase 2 isoform X2 [Cucurbita moschata]	[more]
XP_022928257.1	1.0e-40	80.00	histidine kinase 2 isoform X1 [Cucurbita moschata] >XP_022928258.1 histidine kin...	[more]
XP_023529579.1	2.9e-40	79.05	histidine kinase 2-like [Cucurbita pepo subsp. pepo] >XP_023529580.1 histidine k...	[more]

BLAST of Spg006252 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg006252 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJE1	4.9e-41	80.00	Histidine kinase OS=Cucurbita moschata OX=3662 GN=LOC111435146 PE=4 SV=1	[more]
A0A6J1ER81	4.9e-41	80.00	Histidine kinase OS=Cucurbita moschata OX=3662 GN=LOC111435146 PE=4 SV=1	[more]
A0A6J1JPU8	5.6e-37	76.19	Histidine kinase OS=Cucurbita maxima OX=3661 GN=LOC111486406 PE=4 SV=1	[more]
A0A6J1JNY0	5.6e-37	76.19	Histidine kinase OS=Cucurbita maxima OX=3661 GN=LOC111486406 PE=4 SV=1	[more]
A0A6J1C2P9	1.1e-35	74.29	Histidine kinase OS=Momordica charantia OX=3673 GN=LOC111007822 PE=4 SV=1	[more]

BLAST of Spg006252 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.250.1190		coord: 59..101 e-value: 6.2E-8 score: 34.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006252.1	Spg006252.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048856	anatomical structure development
biological_process	GO:0009736	cytokinin-activated signaling pathway
biological_process	GO:0018106	peptidyl-histidine phosphorylation
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0050793	regulation of developmental process
biological_process	GO:0009628	response to abiotic stimulus
biological_process	GO:0006950	response to stress
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0000155	phosphorelay sensor kinase activity