Spg006244 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006244
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	F-box domain-containing protein
Location	scaffold4: 4706012 .. 4706485 (-)
RNA-Seq Expression	Spg006244
Synteny	Spg006244

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCGAAATGCGCCTCAAGAAGACAACAACAAGAAAATCAAATTCTCAATCAACGATCACCTCGACATCCTCACCGAAATCCTCAAGCGACTCGACGGCCCCTCCCTCTGCGCCGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTCGCAACGACGATTCGCTCTGGGAGCACCTCTGCTTCCGCCACGTCTCCTCTCCGCCGCCCTCCTCCGTCCGCCCTGTCGTCCTCGCTCTCGGCGGCTACAAGAGACTCTACATGCTCTGCCTCCGTCCTGTCCTCAGCCGATTGAATCGCTCCGATTCGCTCCGCCGCGTTTGGACTCTGCAAGATCAGGTCCAACTCTCGCTCTCCTTGTTCTGCGTCGATTATTACGAGAGAAACGGTTGCCTCGGAGGCGATGCCGCGGCGGCGGCGGCCTCCGCGGCTCCGTCGCTGCGGTTCCTCTGCAAACCGGTGAACGTATAA

mRNA sequence

ATGCAGCGAAATGCGCCTCAAGAAGACAACAACAAGAAAATCAAATTCTCAATCAACGATCACCTCGACATCCTCACCGAAATCCTCAAGCGACTCGACGGCCCCTCCCTCTGCGCCGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTCGCAACGACGATTCGCTCTGGGAGCACCTCTGCTTCCGCCACGTCTCCTCTCCGCCGCCCTCCTCCGTCCGCCCTGTCGTCCTCGCTCTCGGCGGCTACAAGAGACTCTACATGCTCTGCCTCCGTCCTGTCCTCAGCCGATTGAATCGCTCCGATTCGCTCCGCCGCGTTTGGACTCTGCAAGATCAGGTCCAACTCTCGCTCTCCTTGTTCTGCGTCGATTATTACGAGAGAAACGGTTGCCTCGGAGGCGATGCCGCGGCGGCGGCGGCCTCCGCGGCTCCGTCGCTGCGGTTCCTCTGCAAACCGGTGAACGTATAA

Coding sequence (CDS)

ATGCAGCGAAATGCGCCTCAAGAAGACAACAACAAGAAAATCAAATTCTCAATCAACGATCACCTCGACATCCTCACCGAAATCCTCAAGCGACTCGACGGCCCCTCCCTCTGCGCCGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTCGCAACGACGATTCGCTCTGGGAGCACCTCTGCTTCCGCCACGTCTCCTCTCCGCCGCCCTCCTCCGTCCGCCCTGTCGTCCTCGCTCTCGGCGGCTACAAGAGACTCTACATGCTCTGCCTCCGTCCTGTCCTCAGCCGATTGAATCGCTCCGATTCGCTCCGCCGCGTTTGGACTCTGCAAGATCAGGTCCAACTCTCGCTCTCCTTGTTCTGCGTCGATTATTACGAGAGAAACGGTTGCCTCGGAGGCGATGCCGCGGCGGCGGCGGCCTCCGCGGCTCCGTCGCTGCGGTTCCTCTGCAAACCGGTGAACGTATAA

Protein sequence

MQRNAPQEDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNRSDSLRRVWTLQDQVQLSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV

Homology

[Close]

BLAST of Spg006244 vs. NCBI nr
Match: XP_022952371.1 (F-box protein SNE-like [Cucurbita moschata] >XP_023554630.1 F-box protein SNE-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 272.3 bits (695), Expect = 2.6e-69
Identity = 141/163 (86.50%), Postives = 145/163 (88.96%), Query Frame = 0


Query: 1   MQRNAPQED-----NNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60
           MQ NAPQ D     N+KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 61  SLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNRSDSLRRVWTLQDQV 120
           SLWEHLCFRHVSSPP SSVRP++LALGGYKRLYMLCLRPVLSRLNRS  + RV TLQDQV
Sbjct: 61  SLWEHLCFRHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 121 Q-LSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV 158
           Q LSLSLFCVDYYERNG LGGDAAA    AAPSLRFLCKPVNV
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAA----AAPSLRFLCKPVNV 159

[Close]

BLAST of Spg006244 vs. NCBI nr
Match: XP_022969281.1 (F-box protein SNE-like [Cucurbita maxima])

HSP 1 Score: 269.6 bits (688), Expect = 1.7e-68
Identity = 140/163 (85.89%), Postives = 144/163 (88.34%), Query Frame = 0


Query: 1   MQRNAPQED-----NNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60
           MQ NAPQ D     N+KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 61  SLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNRSDSLRRVWTLQDQV 120
           SLWEHLCF HVSSPP SSVRP++LALGGYKRLYMLCLRPVLSRLNRS  + RV TLQDQV
Sbjct: 61  SLWEHLCFLHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 121 Q-LSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV 158
           Q LSLSLFCVDYYERNG LGGDAAA    AAPSLRFLCKPVNV
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAA----AAPSLRFLCKPVNV 159

[Close]

BLAST of Spg006244 vs. NCBI nr
Match: KAG7011864.1 (F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.9 bits (686), Expect = 2.8e-68
Identity = 140/163 (85.89%), Postives = 144/163 (88.34%), Query Frame = 0


Query: 1   MQRNAPQED-----NNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60
           MQ NAPQ D     N+KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 61  SLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNRSDSLRRVWTLQDQV 120
           SLWEHLCFRHVSSP  SSVRP++LALGGYKRLYMLCLRPVLSRLNRS  + RV TLQDQV
Sbjct: 61  SLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 121 Q-LSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV 158
           Q LSLSLFCVDYYERNG LGGDAAA    AAPSLRFLCKPVNV
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAA----AAPSLRFLCKPVNV 159

[Close]

BLAST of Spg006244 vs. NCBI nr
Match: KAG6572228.1 (F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 263.1 bits (671), Expect = 1.6e-66
Identity = 137/160 (85.62%), Postives = 141/160 (88.12%), Query Frame = 0


Query: 1   MQRNAPQED-----NNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60
           MQ NAPQ D     N+KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 61  SLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNRSDSLRRVWTLQDQV 120
           SLWEHLCFRHVSSP  SSVRP++LALGGYKRLYMLCLRPVLSRLNRS  + RV TLQDQV
Sbjct: 61  SLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 121 Q-LSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKP 155
           Q LSLSLFCVDYYERNG LGGDAAA    AAPSLRFLCKP
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAA----AAPSLRFLCKP 156

[Close]

BLAST of Spg006244 vs. NCBI nr
Match: XP_022136160.1 (F-box protein SNE-like [Momordica charantia])

HSP 1 Score: 241.5 bits (615), Expect = 4.9e-60
Identity = 123/163 (75.46%), Postives = 136/163 (83.44%), Query Frame = 0


Query: 1   MQRNAPQEDN----NKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDS 60
           MQRNA +++N     K  KFSINDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARNDDS
Sbjct: 1   MQRNAAEKNNKIKKKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDS 60

Query: 61  LWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLN--RSDSLRRVWTLQDQ 120
           LWEHLC RH SSPPPS++R VVLALGGYKRLYMLCLRP+L+  N  RS  +RRV TLQD 
Sbjct: 61  LWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLLATFNRRRSHFVRRVSTLQDH 120

Query: 121 VQLSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV 158
           +QLSLSLF VD YER+G + GDAAA    AAPSLRFLCKPVNV
Sbjct: 121 LQLSLSLFSVDCYERSGRIAGDAAA----AAPSLRFLCKPVNV 159

[Close]

BLAST of Spg006244 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.2e-38
Identity = 92/159 (57.86%), Postives = 111/159 (69.81%), Query Frame = 0


Query: 7   QEDNNKKIK------FSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEH 66
           ++ NNK+ +      FSINDH D+L EIL+RLDG SLC+AACVCRLW A+ARN DS+WE 
Sbjct: 11  EKSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARN-DSIWEE 70

Query: 67  LCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNRSDSLRRVWTLQDQVQLSLS 126
           LCFR VS  P  S+R VV ALGGY+ LY LC+RPVL+RL      + +WT +DQ+QLSLS
Sbjct: 71  LCFRQVSPRPSLSLRSVVSALGGYRCLYFLCIRPVLARLP-----KLLWT-RDQLQLSLS 130

Query: 127 LFCVDYYER--NGCLGGDAAAAAASAAPSLRFLCKPVNV 158
           L+CV YYER   G   GDA  +      SL FL KPVNV
Sbjct: 131 LYCVHYYERLYVGAWLGDAPPS------SLIFLRKPVNV 156

[Close]

BLAST of Spg006244 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-12
Identity = 52/139 (37.41%), Postives = 79/139 (56.83%), Query Frame = 0


Query: 2   QRNAPQEDNNKKIKFSIND-HLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEH 61
           Q   P ED  +  +  + D   D++ E+L+R +  +L AAACV R W  LA  D+ LWE 
Sbjct: 57  QEEQPPEDAGEGEQPRVPDLGEDLVFEVLRRAEARTLAAAACVSRGWRQLA-EDERLWEA 116

Query: 62  LCFRHVSSPPPS--SVRPVVLALGGYKRLYMLCLRPVLSR---LNRSDSLRR--VWTLQD 121
            C R  ++   S   +R VVL+LGG++RL+ + +RP+  R   + R    R+  V   +D
Sbjct: 117 ACVREWANLGFSERQLRAVVLSLGGFRRLHAVYIRPLQWRGAGVPRQQGRRQPPVRLGRD 176

Query: 122 QVQLSLSLFCVDYYERNGC 133
           QVQLSLSLF + +++   C
Sbjct: 177 QVQLSLSLFSIGFFQNMPC 194

[Close]

BLAST of Spg006244 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.9e-11
Identity = 45/130 (34.62%), Postives = 78/130 (60.00%), Query Frame = 0


Query: 9   DNNKKIKFSINDHL-------DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHL 68
           + NKK+K +  + +       +++ E+LK +D  +L  ++CV ++W   A+ D+ LWE +
Sbjct: 17  ETNKKMKSTEEEEIGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQ-DERLWELI 76

Query: 69  CFRHVSS--PPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNRSDSLRRVWTLQDQVQLSL 128
           C RH ++     + +R VVLALGG++RL+ L L P LS+ N      R    +D+++L+L
Sbjct: 77  CTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWP-LSKPN-----PRARFGKDELKLTL 136

Query: 129 SLFCVDYYER 130
           SL  + YYE+
Sbjct: 137 SLLSIRYYEK 139

[Close]

BLAST of Spg006244 vs. ExPASy TrEMBL
Match: A0A6J1GK18 (F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111455075 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.2e-69
Identity = 141/163 (86.50%), Postives = 145/163 (88.96%), Query Frame = 0


Query: 1   MQRNAPQED-----NNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60
           MQ NAPQ D     N+KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 61  SLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNRSDSLRRVWTLQDQV 120
           SLWEHLCFRHVSSPP SSVRP++LALGGYKRLYMLCLRPVLSRLNRS  + RV TLQDQV
Sbjct: 61  SLWEHLCFRHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 121 Q-LSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV 158
           Q LSLSLFCVDYYERNG LGGDAAA    AAPSLRFLCKPVNV
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAA----AAPSLRFLCKPVNV 159

[Close]

BLAST of Spg006244 vs. ExPASy TrEMBL
Match: A0A6J1HXD0 (F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111468335 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 8.1e-69
Identity = 140/163 (85.89%), Postives = 144/163 (88.34%), Query Frame = 0


Query: 1   MQRNAPQED-----NNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60
           MQ NAPQ D     N+KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 61  SLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNRSDSLRRVWTLQDQV 120
           SLWEHLCF HVSSPP SSVRP++LALGGYKRLYMLCLRPVLSRLNRS  + RV TLQDQV
Sbjct: 61  SLWEHLCFLHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 121 Q-LSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV 158
           Q LSLSLFCVDYYERNG LGGDAAA    AAPSLRFLCKPVNV
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAA----AAPSLRFLCKPVNV 159

[Close]

BLAST of Spg006244 vs. ExPASy TrEMBL
Match: A0A6J1C339 (F-box protein SNE-like OS=Momordica charantia OX=3673 GN=LOC111007919 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.4e-60
Identity = 123/163 (75.46%), Postives = 136/163 (83.44%), Query Frame = 0


Query: 1   MQRNAPQEDN----NKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDS 60
           MQRNA +++N     K  KFSINDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARNDDS
Sbjct: 1   MQRNAAEKNNKIKKKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDS 60

Query: 61  LWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLN--RSDSLRRVWTLQDQ 120
           LWEHLC RH SSPPPS++R VVLALGGYKRLYMLCLRP+L+  N  RS  +RRV TLQD 
Sbjct: 61  LWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLLATFNRRRSHFVRRVSTLQDH 120

Query: 121 VQLSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV 158
           +QLSLSLF VD YER+G + GDAAA    AAPSLRFLCKPVNV
Sbjct: 121 LQLSLSLFSVDCYERSGRIAGDAAA----AAPSLRFLCKPVNV 159

[Close]

BLAST of Spg006244 vs. ExPASy TrEMBL
Match: M5WSV2 (F-box domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_3G200200 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.3e-55
Identity = 115/156 (73.72%), Postives = 127/156 (81.41%), Query Frame = 0


Query: 2   QRNAPQEDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHL 61
           Q+    ED  K+ KF INDH+DIL EILKRLDGPSL  AACVCRLW  LARN DSLWEHL
Sbjct: 4   QKTPSSEDKEKRPKFFINDHIDILVEILKRLDGPSLGVAACVCRLWSTLARN-DSLWEHL 63

Query: 62  CFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNRSDSLRRVWTLQDQVQLSLSL 121
           CFRHVSSPPPSSVRPVV+ALGGYKRLY +C+RPVLSRL+ SD +RRVWT +D+VQLSLSL
Sbjct: 64  CFRHVSSPPPSSVRPVVVALGGYKRLYRVCVRPVLSRLSDSDLVRRVWT-RDEVQLSLSL 123

Query: 122 FCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV 158
           FCVDYYER+G LGG      ASA+ SL FLC  VNV
Sbjct: 124 FCVDYYERSGRLGGGGGGGDASAS-SLMFLCNTVNV 156

[Close]

BLAST of Spg006244 vs. ExPASy TrEMBL
Match: A0A6P4BI13 (F-box protein SNE OS=Ziziphus jujuba OX=326968 GN=LOC107432193 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.9e-55
Identity = 114/156 (73.08%), Postives = 127/156 (81.41%), Query Frame = 0


Query: 2   QRNAPQEDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHL 61
           Q+N  ++   K+ +F INDH+DIL EILKRLDGPSL AAACVCRLWCA+ RN DSLWEHL
Sbjct: 3   QQNRAEDQKEKRPRFCINDHIDILIEILKRLDGPSLGAAACVCRLWCAITRN-DSLWEHL 62

Query: 62  CFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNRSDSLRRVWTLQDQVQLSLSL 121
           CFRHVSSPPPSSVRPVV+ALGGYKRLYM+C+R VLSRL  SD +RRVWT  D+VQLSLSL
Sbjct: 63  CFRHVSSPPPSSVRPVVVALGGYKRLYMVCVRQVLSRLGHSDLVRRVWT-GDEVQLSLSL 122

Query: 122 FCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV 158
           FCVDYYER G   G      ASA+ SL FLCKPVNV
Sbjct: 123 FCVDYYERLGSGSGRLGGGDASAS-SLMFLCKPVNV 155

[Close]

BLAST of Spg006244 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 159.1 bits (401), Expect = 3.0e-39
Identity = 92/159 (57.86%), Postives = 111/159 (69.81%), Query Frame = 0


Query: 7   QEDNNKKIK------FSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEH 66
           ++ NNK+ +      FSINDH D+L EIL+RLDG SLC+AACVCRLW A+ARN DS+WE 
Sbjct: 11  EKSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARN-DSIWEE 70

Query: 67  LCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNRSDSLRRVWTLQDQVQLSLS 126
           LCFR VS  P  S+R VV ALGGY+ LY LC+RPVL+RL      + +WT +DQ+QLSLS
Sbjct: 71  LCFRQVSPRPSLSLRSVVSALGGYRCLYFLCIRPVLARLP-----KLLWT-RDQLQLSLS 130

Query: 127 LFCVDYYER--NGCLGGDAAAAAASAAPSLRFLCKPVNV 158
           L+CV YYER   G   GDA  +      SL FL KPVNV
Sbjct: 131 LYCVHYYERLYVGAWLGDAPPS------SLIFLRKPVNV 156

[Close]

BLAST of Spg006244 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-12
Identity = 45/130 (34.62%), Postives = 78/130 (60.00%), Query Frame = 0


Query: 9   DNNKKIKFSINDHL-------DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHL 68
           + NKK+K +  + +       +++ E+LK +D  +L  ++CV ++W   A+ D+ LWE +
Sbjct: 17  ETNKKMKSTEEEEIGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQ-DERLWELI 76

Query: 69  CFRHVSS--PPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNRSDSLRRVWTLQDQVQLSL 128
           C RH ++     + +R VVLALGG++RL+ L L P LS+ N      R    +D+++L+L
Sbjct: 77  CTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWP-LSKPN-----PRARFGKDELKLTL 136

Query: 129 SLFCVDYYER 130
           SL  + YYE+
Sbjct: 137 SLLSIRYYEK 139

The following BLAST results are available for this feature:

BLAST of Spg006244 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952371.1	2.6e-69	86.50	F-box protein SNE-like [Cucurbita moschata] >XP_023554630.1 F-box protein SNE-li...	[more]
XP_022969281.1	1.7e-68	85.89	F-box protein SNE-like [Cucurbita maxima]	[more]
KAG7011864.1	2.8e-68	85.89	F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6572228.1	1.6e-66	85.63	F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022136160.1	4.9e-60	75.46	F-box protein SNE-like [Momordica charantia]	[more]

BLAST of Spg006244 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUB6	4.2e-38	57.86	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]
Q7XAK4	2.3e-12	37.41	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]
Q9STX3	1.9e-11	34.62	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]

BLAST of Spg006244 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GK18	1.2e-69	86.50	F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111455075 PE=4 SV=1	[more]
A0A6J1HXD0	8.1e-69	85.89	F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111468335 PE=4 SV=1	[more]
A0A6J1C339	2.4e-60	75.46	F-box protein SNE-like OS=Momordica charantia OX=3673 GN=LOC111007919 PE=4 SV=1	[more]
M5WSV2	2.3e-55	73.72	F-box domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_3G200200 PE=4...	[more]
A0A6P4BI13	3.9e-55	73.08	F-box protein SNE OS=Ziziphus jujuba OX=326968 GN=LOC107432193 PE=4 SV=1	[more]

BLAST of Spg006244 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48170.1	3.0e-39	57.86	F-box family protein	[more]
AT4G24210.1	1.4e-12	34.62	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 22..60 e-value: 1.3E-4 score: 31.3
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 23..64 e-value: 7.6E-10 score: 38.5
None	No IPR available	GENE3D	1.20.1280.50		coord: 9..115 e-value: 1.9E-11 score: 45.7
IPR044184	F-box protein SNE	PANTHER	PTHR47750	F-BOX PROTEIN SNE	coord: 3..157
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 23..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006244.1	Spg006244.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009937	regulation of gibberellic acid mediated signaling pathway
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding