Spg006220 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006220
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Mitochondrial transcription termination factor family protein
Location	scaffold4: 5060889 .. 5062062 (+)
RNA-Seq Expression	Spg006220
Synteny	Spg006220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATTAGCGCCAGTGGAAATGGTACTAGTATGCTGTGGTTCTTCAGGGATAAAGGTTTTGATGACAGAAGCATCGATAATATGTTTAAGAAGTGTAGGCGTTTAGAAGGTATGCAGAACGAAAGAGCTTCTGAAAACTGGGATTATTTGGAAAGAATTGGGATTCAGAAGAGGAAGCTCCCTTCTGTTGTTTCCAAATGCCCTAAGATTCTAGCTCTTGGTCTTCATGAGAAACTTGTCCCCATGGTTGAGTGCCTTGGGACGCTCAGCACTAAGCCTCAGGAAATTGCTTCAGCTATTGCCAAATTTCCTGGCATTCTTTCCTATAGTGTTGAAGAGAAGCTATGTCCTCTTTTGGCTTTTTTTCAAGCATTGGGTGTCTCTGAAAAGCAGCTTGGGAAGATGATTCTACTCAACCCGAGGCTCATTAGCTACAGCATTGAATCGAAGCTCATTGAAACTGTTGATTTTCTTGCTGGGATTGGTCTAACAAAGGAGGGGATGATTGGTAAAGTTCTAGCAAAAAATCCATTTCTCATGGGTTATAGCATTGATAAAAGGCTCCGCCCTACTTCGGAGTTTTTGAAATCGATCGGTCTGAAGGAGATGGATCTTCAAGCAGTTGCGTTGAAATTTCCAGACATTTTGTGCAGGGATGTGGATAAAGTTTTGAGACCAAATTTGGTTTATCTAAGAAGATGTGGGTTTAAAGATGGAGAAATAGTGTCTTTGGTGACTGGTTATCCTCCTATTTTGATAAAGAGCATTCAACATTCTCTAGAACCTCGGATCAGATTTTTAGTTGAAATAATGGGAAGAAAACTTGATGAAGTTGCCAAATATCCCGACTTTTTTAAGCATGGTTTGAAGAAAAGACTCGAGCTGAGGCATAGATTGTTGAAAGAGAATAAAGTGGACTTTACCTTGAGTGAATTGCTGGAATGCAATCAAAAGAAGTTTATGATGAAAATGGGTTTGTTATGAGGTGGAGTTTTAGGTCCTCATATCCTGAAAGAATGTTGTTTTCTCATCATCTCTACAAGTTTTGTTGCCTAATTATTAATTTTCCAGACTTCTAGTTAAAGTGAAGAGCATTCAACCTGCTGAGCAAAATTCTGTAGGCCTGGATTATTGTTCTCCTCCATTCATGCTTCATGCTTTAGGCTCTTAA

mRNA sequence

ATGGAAATTAGCGCCAGTGGAAATGGTACTAGTATGCTGTGGTTCTTCAGGGATAAAGGTTTTGATGACAGAAGCATCGATAATATGTTTAAGAAGTGTAGGCGTTTAGAAGGTATGCAGAACGAAAGAGCTTCTGAAAACTGGGATTATTTGGAAAGAATTGGGATTCAGAAGAGGAAGCTCCCTTCTGTTGTTTCCAAATGCCCTAAGATTCTAGCTCTTGGTCTTCATGAGAAACTTGTCCCCATGGTTGAGTGCCTTGGGACGCTCAGCACTAAGCCTCAGGAAATTGCTTCAGCTATTGCCAAATTTCCTGGCATTCTTTCCTATAGTGTTGAAGAGAAGCTATGTCCTCTTTTGGCTTTTTTTCAAGCATTGGGTGTCTCTGAAAAGCAGCTTGGGAAGATGATTCTACTCAACCCGAGGCTCATTAGCTACAGCATTGAATCGAAGCTCATTGAAACTGTTGATTTTCTTGCTGGGATTGGTCTAACAAAGGAGGGGATGATTGGTAAAGTTCTAGCAAAAAATCCATTTCTCATGGGTTATAGCATTGATAAAAGGCTCCGCCCTACTTCGGAGTTTTTGAAATCGATCGGTCTGAAGGAGATGGATCTTCAAGCAGTTGCGTTGAAATTTCCAGACATTTTGTGCAGGGATGTGGATAAAGTTTTGAGACCAAATTTGGTTTATCTAAGAAGATGTGGGTTTAAAGATGGAGAAATAGTGTCTTTGGTGACTGGTTATCCTCCTATTTTGATAAAGAGCATTCAACATTCTCTAGAACCTCGGATCAGATTTTTAGTTGAAATAATGGGAAGAAAACTTGATGAAGTTGCCAAATATCCCGACTTTTTTAAGCATGGTTTGAAGAAAAGACTCGAGCTGAGGCATAGATTGTTGAAAGAGAATAAAGTGGACTTTACCTTGAGTGAATTGCTGGAATGCAATCAAAAGAAGTTTATGATGAAAATGGTTAAAGTGAAGAGCATTCAACCTGCTGAGCAAAATTCTGTAGGCCTGGATTATTGTTCTCCTCCATTCATGCTTCATGCTTTAGGCTCTTAA

Coding sequence (CDS)

ATGGAAATTAGCGCCAGTGGAAATGGTACTAGTATGCTGTGGTTCTTCAGGGATAAAGGTTTTGATGACAGAAGCATCGATAATATGTTTAAGAAGTGTAGGCGTTTAGAAGGTATGCAGAACGAAAGAGCTTCTGAAAACTGGGATTATTTGGAAAGAATTGGGATTCAGAAGAGGAAGCTCCCTTCTGTTGTTTCCAAATGCCCTAAGATTCTAGCTCTTGGTCTTCATGAGAAACTTGTCCCCATGGTTGAGTGCCTTGGGACGCTCAGCACTAAGCCTCAGGAAATTGCTTCAGCTATTGCCAAATTTCCTGGCATTCTTTCCTATAGTGTTGAAGAGAAGCTATGTCCTCTTTTGGCTTTTTTTCAAGCATTGGGTGTCTCTGAAAAGCAGCTTGGGAAGATGATTCTACTCAACCCGAGGCTCATTAGCTACAGCATTGAATCGAAGCTCATTGAAACTGTTGATTTTCTTGCTGGGATTGGTCTAACAAAGGAGGGGATGATTGGTAAAGTTCTAGCAAAAAATCCATTTCTCATGGGTTATAGCATTGATAAAAGGCTCCGCCCTACTTCGGAGTTTTTGAAATCGATCGGTCTGAAGGAGATGGATCTTCAAGCAGTTGCGTTGAAATTTCCAGACATTTTGTGCAGGGATGTGGATAAAGTTTTGAGACCAAATTTGGTTTATCTAAGAAGATGTGGGTTTAAAGATGGAGAAATAGTGTCTTTGGTGACTGGTTATCCTCCTATTTTGATAAAGAGCATTCAACATTCTCTAGAACCTCGGATCAGATTTTTAGTTGAAATAATGGGAAGAAAACTTGATGAAGTTGCCAAATATCCCGACTTTTTTAAGCATGGTTTGAAGAAAAGACTCGAGCTGAGGCATAGATTGTTGAAAGAGAATAAAGTGGACTTTACCTTGAGTGAATTGCTGGAATGCAATCAAAAGAAGTTTATGATGAAAATGGTTAAAGTGAAGAGCATTCAACCTGCTGAGCAAAATTCTGTAGGCCTGGATTATTGTTCTCCTCCATTCATGCTTCATGCTTTAGGCTCTTAA

Protein sequence

MEISASGNGTSMLWFFRDKGFDDRSIDNMFKKCRRLEGMQNERASENWDYLERIGIQKRKLPSVVSKCPKILALGLHEKLVPMVECLGTLSTKPQEIASAIAKFPGILSYSVEEKLCPLLAFFQALGVSEKQLGKMILLNPRLISYSIESKLIETVDFLAGIGLTKEGMIGKVLAKNPFLMGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDGEIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRKLDEVAKYPDFFKHGLKKRLELRHRLLKENKVDFTLSELLECNQKKFMMKMVKVKSIQPAEQNSVGLDYCSPPFMLHALGS

Homology

[Close]

BLAST of Spg006220 vs. NCBI nr
Match: XP_022135779.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 603.2 bits (1554), Expect = 1.4e-168
Identity = 302/325 (92.92%), Postives = 312/325 (96.00%), Query Frame = 0


Query: 1   MEISASGNGTSMLWFFRDKGFDDRSIDNMFKKCRRLEGMQNERASENWDYLERIGIQKRK 60
           ME SAS NGT+MLWFFRDKGFDDRSID MFKKCRRLE +  ERASENW+YLERIGIQKRK
Sbjct: 6   METSASRNGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLERIGIQKRK 65

Query: 61  LPSVVSKCPKILALGLHEKLVPMVECLGTLSTKPQEIASAIAKFPGILSYSVEEKLCPLL 120
           LP VVSKCPKILALGLHEKLVPMVECLGTLSTKP EIASAIAKFPGILSYSVEEKLCPLL
Sbjct: 66  LPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVEEKLCPLL 125

Query: 121 AFFQALGVSEKQLGKMILLNPRLISYSIESKLIETVDFLAGIGLTKEGMIGKVLAKNPFL 180
           AFFQALGV EKQLGKMILLNPRLISYSIESKLIETVDFLAG+GLTKEGM+GKV+AKNPFL
Sbjct: 126 AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLAGLGLTKEGMLGKVIAKNPFL 185

Query: 181 MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG 240
           MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG
Sbjct: 186 MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG 245

Query: 241 EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRKLDEVAKYPDFFKHGLKKRLELRHRL 300
           E+VSLVTGYPPILIKSI+HSLEPRIRFLVEIMGRKL+EVAKYPDFFKHG KKRLELR +L
Sbjct: 246 EVVSLVTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGFKKRLELRQKL 305

Query: 301 LKENKVDFTLSELLECNQKKFMMKM 326
           L E KVDFTLSELLECNQKKFMMKM
Sbjct: 306 LIEKKVDFTLSELLECNQKKFMMKM 330

[Close]

BLAST of Spg006220 vs. NCBI nr
Match: XP_038887558.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 592.4 bits (1526), Expect = 2.5e-165
Identity = 294/325 (90.46%), Postives = 308/325 (94.77%), Query Frame = 0


Query: 1   MEISASGNGTSMLWFFRDKGFDDRSIDNMFKKCRRLEGMQNERASENWDYLERIGIQKRK 60
           ME+SAS NG  MLWFFRDKGFDDRSID MFK+CRRL+ MQ ERASENW+YLERIGIQ+RK
Sbjct: 1   MEVSASRNGNCMLWFFRDKGFDDRSIDKMFKRCRRLKDMQKERASENWEYLERIGIQRRK 60

Query: 61  LPSVVSKCPKILALGLHEKLVPMVECLGTLSTKPQEIASAIAKFPGILSYSVEEKLCPLL 120
           LPS+VSKCPKILALGL EKLVPMVECL TLSTKP EIASAIAKFPGILSYSVEEKLCPLL
Sbjct: 61  LPSIVSKCPKILALGLQEKLVPMVECLATLSTKPNEIASAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVSEKQLGKMILLNPRLISYSIESKLIETVDFLAGIGLTKEGMIGKVLAKNPFL 180
           AFFQALGV EK LGKMILLNPRLISYSIESKL+ETVDF AG GL KEG+IGKVLAKNPFL
Sbjct: 121 AFFQALGVPEKHLGKMILLNPRLISYSIESKLVETVDFFAGFGLMKEGVIGKVLAKNPFL 180

Query: 181 MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG 240
           MGYS+DKRLRPTSEFL+SIGL EMDLQAVALKFPDILCRDVDKVLRPNL YLRRCGFKDG
Sbjct: 181 MGYSVDKRLRPTSEFLRSIGLNEMDLQAVALKFPDILCRDVDKVLRPNLDYLRRCGFKDG 240

Query: 241 EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRKLDEVAKYPDFFKHGLKKRLELRHRL 300
           EIVSLVTGYPP+LIKSIQHSLEPRIRFLVEIMGRKLDEVA+YPDFFKHGLKKRLELRHRL
Sbjct: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLDEVAEYPDFFKHGLKKRLELRHRL 300

Query: 301 LKENKVDFTLSELLECNQKKFMMKM 326
           LKE ++DFTLSELLECNQKKFMMKM
Sbjct: 301 LKEKQMDFTLSELLECNQKKFMMKM 325

[Close]

BLAST of Spg006220 vs. NCBI nr
Match: XP_023554548.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 587.0 bits (1512), Expect = 1.1e-163
Identity = 295/325 (90.77%), Postives = 306/325 (94.15%), Query Frame = 0


Query: 1   MEISASGNGTSMLWFFRDKGFDDRSIDNMFKKCRRLEGMQNERASENWDYLERIGIQKRK 60
           MEIS S NGTSMLWFFRDKGFDD SID MFKKCRRLEGMQNERA+ENW+YLE IGIQKRK
Sbjct: 1   MEISGSRNGTSMLWFFRDKGFDDGSIDKMFKKCRRLEGMQNERAAENWEYLEGIGIQKRK 60

Query: 61  LPSVVSKCPKILALGLHEKLVPMVECLGTLSTKPQEIASAIAKFPGILSYSVEEKLCPLL 120
           LPSVVSKCPKIL LGL EK+ PMVECL TLSTKP+EIA+AIAKFPGILSYSVEEKLCPLL
Sbjct: 61  LPSVVSKCPKILVLGLQEKIAPMVECLATLSTKPREIATAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVSEKQLGKMILLNPRLISYSIESKLIETVDFLAGIGLTKEGMIGKVLAKNPFL 180
           AFFQALGV EKQLGKMILLNPRLISYSIESKLIETVDFLAG+GLTK+GMIGKVLAKNPFL
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLAGVGLTKDGMIGKVLAKNPFL 180

Query: 181 MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG 240
           +GYS+ KRLRPT EFLKSIGL EMDLQAVALKFPDILCRDVDKVLRPNL YLRR GFKDG
Sbjct: 181 IGYSVHKRLRPTFEFLKSIGLSEMDLQAVALKFPDILCRDVDKVLRPNLDYLRRSGFKDG 240

Query: 241 EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRKLDEVAKYPDFFKHGLKKRLELRHRL 300
           EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGR LDEVA+YP+FFKHGLKKRLELRHRL
Sbjct: 241 EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRTLDEVAEYPEFFKHGLKKRLELRHRL 300

Query: 301 LKENKVDFTLSELLECNQKKFMMKM 326
           LKE   DFTLSELLECNQKKFMMKM
Sbjct: 301 LKEKTTDFTLSELLECNQKKFMMKM 325

[Close]

BLAST of Spg006220 vs. NCBI nr
Match: KAG7011838.1 (Transcription termination factor MTERF6, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 586.3 bits (1510), Expect = 1.8e-163
Identity = 294/325 (90.46%), Postives = 305/325 (93.85%), Query Frame = 0


Query: 1   MEISASGNGTSMLWFFRDKGFDDRSIDNMFKKCRRLEGMQNERASENWDYLERIGIQKRK 60
           MEIS SGNGTSMLWFFRDKGFDD SID MFKKCRRLEGMQNERA+ENW+YLE IGIQKRK
Sbjct: 1   MEISGSGNGTSMLWFFRDKGFDDGSIDKMFKKCRRLEGMQNERAAENWEYLEGIGIQKRK 60

Query: 61  LPSVVSKCPKILALGLHEKLVPMVECLGTLSTKPQEIASAIAKFPGILSYSVEEKLCPLL 120
           LPSVV KCPKIL LGL EK+ PMVECL TLSTKP+EIA+AIAKFPGILSYSVEEKLCPLL
Sbjct: 61  LPSVVFKCPKILVLGLQEKIAPMVECLATLSTKPREIATAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVSEKQLGKMILLNPRLISYSIESKLIETVDFLAGIGLTKEGMIGKVLAKNPFL 180
           AFFQALGV EKQLGKMILLNPRLISYSIESKLIETVDFLAG+GLTKEGMIGKVL KNPFL
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLAGVGLTKEGMIGKVLVKNPFL 180

Query: 181 MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG 240
           +GYS+ KRLRPT EFLKSIGL EMDLQAVALKFPD+LCRDVDKVLRPNL YLRR GFKDG
Sbjct: 181 IGYSVHKRLRPTFEFLKSIGLSEMDLQAVALKFPDVLCRDVDKVLRPNLDYLRRRGFKDG 240

Query: 241 EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRKLDEVAKYPDFFKHGLKKRLELRHRL 300
           EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGR LDEVA+YP+FFKHGLKKRLELRHRL
Sbjct: 241 EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRTLDEVAEYPEFFKHGLKKRLELRHRL 300

Query: 301 LKENKVDFTLSELLECNQKKFMMKM 326
           LKE   DFTLSELLECNQKKFMMKM
Sbjct: 301 LKEKTTDFTLSELLECNQKKFMMKM 325

[Close]

BLAST of Spg006220 vs. NCBI nr
Match: XP_022969173.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucurbita maxima])

HSP 1 Score: 585.1 bits (1507), Expect = 4.1e-163
Identity = 294/325 (90.46%), Postives = 306/325 (94.15%), Query Frame = 0


Query: 1   MEISASGNGTSMLWFFRDKGFDDRSIDNMFKKCRRLEGMQNERASENWDYLERIGIQKRK 60
           MEIS S NGTSMLWFFRDKGFDD SID MFKKCRRLEGMQNERA+ENW+YLE IGIQKRK
Sbjct: 1   MEISGSRNGTSMLWFFRDKGFDDGSIDKMFKKCRRLEGMQNERAAENWEYLEGIGIQKRK 60

Query: 61  LPSVVSKCPKILALGLHEKLVPMVECLGTLSTKPQEIASAIAKFPGILSYSVEEKLCPLL 120
           LPSVVSKCPKIL LGL EK+ PMVECL TL+TKP+EIA+AIAKFPGILSYSVEEKLCPLL
Sbjct: 61  LPSVVSKCPKILVLGLQEKIAPMVECLATLTTKPREIATAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVSEKQLGKMILLNPRLISYSIESKLIETVDFLAGIGLTKEGMIGKVLAKNPFL 180
           AFFQALGV EKQLGKMILLNPRLISYSIESKLIETVDFLAG+GLTKEGMIGKVL KNPFL
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLAGVGLTKEGMIGKVLVKNPFL 180

Query: 181 MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG 240
           +GYS+ KRLRPT EFLKSIGL EMDLQAVALKFPDILCRDVDKVLRPNL YLRR GFKDG
Sbjct: 181 IGYSVHKRLRPTFEFLKSIGLSEMDLQAVALKFPDILCRDVDKVLRPNLDYLRRRGFKDG 240

Query: 241 EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRKLDEVAKYPDFFKHGLKKRLELRHRL 300
           EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGR LDEVA+YP+FFKHGLKKRLELRHRL
Sbjct: 241 EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRTLDEVAEYPEFFKHGLKKRLELRHRL 300

Query: 301 LKENKVDFTLSELLECNQKKFMMKM 326
           LKE  +DFTLSELLECNQKKFMMKM
Sbjct: 301 LKEKTMDFTLSELLECNQKKFMMKM 325

[Close]

BLAST of Spg006220 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 5.2e-121
Identity = 210/319 (65.83%), Postives = 264/319 (82.76%), Query Frame = 0


Query: 8   NGTSMLWFFRDKGFDDRSIDNMFKKCRRLEGMQNERASENWDYLERI-GIQKRKLPSVVS 67
           N +S++WFFRDKGFDD SID M +KC++LE  Q++ ASENWDYL  I GIQ+RKLP +VS
Sbjct: 5   NTSSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVS 64

Query: 68  KCPKILALGLHEKLVPMVECLGTLSTKPQEIASAIAKFPGILSYSVEEKLCPLLAFFQAL 127
           +CPKIL L L E+L+PMVECL +L   P+E+ASAI KFP ILS+SVEEKLCPLLAFFQAL
Sbjct: 65  RCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQAL 124

Query: 128 GVSEKQLGKMILLNPRLISYSIESKLIETVDFLAGIGLTKEGMIGKVLAKNPFLMGYSID 187
           GV E QLGKMIL NPRLISYSI++KL   V FLA +GL ++GMIGKVL KNPFLMGYS+D
Sbjct: 125 GVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVD 184

Query: 188 KRLRPTSEFLK-SIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDGEIVSL 247
           KRLRPT+EFLK S+GL E  +++V + FP +LCRDV+K+L+PN  YL+ CGF D +I ++
Sbjct: 185 KRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATM 244

Query: 248 VTGYPPILIKSIQHSLEPRIRFLVEIMGRKLDEVAKYPDFFKHGLKKRLELRHRLLKENK 307
           VTGYP ILIKS+++SL+PRIRFLV++MGR +DEVA YP+FF HGLKK++E R +L+K+N 
Sbjct: 245 VTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNN 304

Query: 308 VDFTLSELLECNQKKFMMK 325
           +D +L E+L+CN KKF  K
Sbjct: 305 IDCSLREMLDCNTKKFHEK 323

[Close]

BLAST of Spg006220 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.1e-29
Identity = 88/299 (29.43%), Postives = 158/299 (52.84%), Query Frame = 0


Query: 50  YLERIGIQKRKLPSVVSKCPKILALGLHEKLVPMVECLGTLSTKPQEIASAIAKFPGILS 109
           YL  +G+   ++ ++  K        L  K+ P+VE L  L     +I + + K P I  
Sbjct: 202 YLLDLGLNLEQIKTITRKFAAFPYYSLDGKIKPVVEFLLDLGIPKSDIPTILCKRPQICG 261

Query: 110 YSVEEKLCPLLAFFQALGVSEKQLGKMILLNPRLISYSIESKLIETVDFLAGIGLTKEGM 169
            S+ + L P +AF + LG+ + Q  K+I   P +++YS   KL  TV+FL+  GLT+E  
Sbjct: 262 ISLTDNLKPTMAFLETLGIDKNQWAKIISRFPAILTYS-RQKLTSTVEFLSQTGLTEE-Q 321

Query: 170 IGKVLAKNPFLMGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNL 229
           IG++L + P +M YS++ +LRPT E+ +S+    +D+  +  + P      ++  L+P  
Sbjct: 322 IGRILTRCPNIMSYSVEDKLRPTMEYFRSL---NVDVAVLLHRCPQTFGLSIESNLKPVT 381

Query: 230 VYLRRCGFKDGEIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRKLDEVAKYPDFFKHG 289
            +    GF   EI  +++ Y  +   S++ ++ P+  +  + M     E+ K+P FF + 
Sbjct: 382 EFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPKWDYF-QTMDYPKSELVKFPQFFGYS 441

Query: 290 LKKRLELRHRLLKENKVDFTLSELLECN-------QKKFMMKMVKVKSIQPAEQNSVGL 342
           L++R++ R+ L++ + V   L+++L  +        KK MMK+V    I  AEQ+S GL
Sbjct: 442 LQERIKPRYELVQRSGVRLLLNQVLSLSGIEFEKVVKKKMMKLVSNNVI--AEQSSGGL 492

[Close]

BLAST of Spg006220 vs. ExPASy Swiss-Prot
Match: F4IHL3 (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.7e-29
Identity = 79/312 (25.32%), Postives = 157/312 (50.32%), Query Frame = 0


Query: 32  KCRRLEGMQNERASENWDYLERIGIQKRKLPSVVSKCPKILALGLHEKLVPMVECLGTLS 91
           +C  L     E      D+  ++G+ +    ++V   PKI+     + +   +  L    
Sbjct: 304 RCPELLSFSMEEVKSRVDFFLKMGMNQNDFGTMVYDYPKIIGFFSFQVMEKKINYLKEFG 363

Query: 92  TKPQEIASAIAKFPGILSYSVEEKLCPLLAFFQALGVSEKQLGKMILLNPRLISYSIESK 151
              +E+   +A  P ++  S+EE+  PL+ +F  LG+ ++ + +++++ P L    +E  
Sbjct: 364 LSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILVVKPILYCIDLEKT 423

Query: 152 LIETVDFLAGIGLTKEGMIGKVLAKNPFLMGYSIDKRLRPTSEFLKS-IGLKEMDLQAVA 211
           +   V FL  +G+  E  IG +L K P L+  S+ K++RP   FL +  G+ + D+  V 
Sbjct: 424 IAPKVRFLQEMGIPNEA-IGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAGVTQKDIGKVI 483

Query: 212 LKFPDILCRDVDKVLRPNLVYLRRCGFKDGEIVSLVTGYPPILIKSIQHSLEPRIRFLVE 271
              P +L   +   L PN+ Y    G +  ++  ++  +P +L  ++  +L P+ R+L  
Sbjct: 484 AMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNVD-NLRPKYRYLRR 543

Query: 272 IMGRKLDEVAKYPDFFKHGLKKRLELRHRLLKENKVDFTLSELLECNQKKFMMKMVKVKS 331
            M R L ++ ++P FF + L++R+  RH ++ EN+V+F L  +L C  ++F  ++     
Sbjct: 544 TMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEFERRV--RDK 603

Query: 332 IQPAEQNSVGLD 343
           ++  E+   GLD
Sbjct: 604 VERRERFEAGLD 611

[Close]

BLAST of Spg006220 vs. ExPASy Swiss-Prot
Match: Q9FM80 (Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF9 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.1e-21
Identity = 66/230 (28.70%), Postives = 117/230 (50.87%), Query Frame = 0


Query: 44  ASENWDYLERIGIQKRKLPSVVSKCPKILALGLHEKLVPMVECLGTLSTKPQEIASAIAK 103
           A E  DYL  +G++ R +  ++ + P+IL   +   L   +  L  L     +I   +A 
Sbjct: 219 AQERLDYLLSVGVKHRDIKRMLLRQPQILQYTVENNLKAHISFLMGLGIPNSKIGQIVAA 278

Query: 104 FPGILSYSVEEKLCPLLAF-FQALGVSEKQLGKMILLNPRLISYSIESKLIETVDFLA-G 163
            P + SYSVE  L P + +  + +G+ E  +GK++ L+P+++   ++        FL+  
Sbjct: 279 TPSLFSYSVENSLRPTIRYLIEEVGIKETDVGKVVQLSPQILVQRLDITWNTRYMFLSKE 338

Query: 164 IGLTKEGMIGKVLAKNPFLMGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDV 223
           +G  ++ ++ K++ K+P L+ YSID    P   FL+SIG+   D+  V      +L   +
Sbjct: 339 LGAPRDSVV-KMVKKHPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLTQVLSLSL 398

Query: 224 DKVLRPNLVYLRRCGFKDGEIVSLVTGYPPILIKSIQHSLEPRIRFLVEI 272
           +  L+P  +YL     +    V ++T YP  L  S+   + PR RFLVE+
Sbjct: 399 EDNLKPKYMYLVN---ELNNEVHILTKYPMYLSLSLDQRIRPRHRFLVEL 444

[Close]

BLAST of Spg006220 vs. ExPASy Swiss-Prot
Match: Q84X53 (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 8.0e-21
Identity = 58/196 (29.59%), Postives = 111/196 (56.63%), Query Frame = 0


Query: 127 GVSEKQLGKMILLNPRLISYSIESKLIETVDFLAGIGLTKEGMIGKVLAKNPFLMGYSID 186
           G+S   +G+++ + P L++   ES+++  + FL+      E  I K +++ P L+  S+D
Sbjct: 76  GLSRPAVGRILDMFPDLLTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVD 135

Query: 187 KRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRR-CGFKDGEIVSL 246
            +LRP   FLK++G    D   +  +   +L  +V++ L P + YL    GF   E+  +
Sbjct: 136 YQLRPALTFLKTLGFVGRD--TITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKM 195

Query: 247 VTGYPPILIKSIQHSLEPRIRFLVEIMGRKLDEVAKYPDFFKHGLKKRLELRHRLLKENK 306
           V   P +L  S+ ++L P++ F +E M   + E+ ++P +F   L+++++ RHRLLKE+ 
Sbjct: 196 VVRSPALLTYSVDNNLVPKVEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHG 255

Query: 307 VDFTLSELLECNQKKF 322
           +   LSE+L+ +  +F
Sbjct: 256 ILMPLSEMLKVSDGQF 269

[Close]

BLAST of Spg006220 vs. ExPASy TrEMBL
Match: A0A6J1C2G0 (transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007658 PE=3 SV=1)

HSP 1 Score: 603.2 bits (1554), Expect = 7.0e-169
Identity = 302/325 (92.92%), Postives = 312/325 (96.00%), Query Frame = 0


Query: 1   MEISASGNGTSMLWFFRDKGFDDRSIDNMFKKCRRLEGMQNERASENWDYLERIGIQKRK 60
           ME SAS NGT+MLWFFRDKGFDDRSID MFKKCRRLE +  ERASENW+YLERIGIQKRK
Sbjct: 6   METSASRNGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLERIGIQKRK 65

Query: 61  LPSVVSKCPKILALGLHEKLVPMVECLGTLSTKPQEIASAIAKFPGILSYSVEEKLCPLL 120
           LP VVSKCPKILALGLHEKLVPMVECLGTLSTKP EIASAIAKFPGILSYSVEEKLCPLL
Sbjct: 66  LPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVEEKLCPLL 125

Query: 121 AFFQALGVSEKQLGKMILLNPRLISYSIESKLIETVDFLAGIGLTKEGMIGKVLAKNPFL 180
           AFFQALGV EKQLGKMILLNPRLISYSIESKLIETVDFLAG+GLTKEGM+GKV+AKNPFL
Sbjct: 126 AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLAGLGLTKEGMLGKVIAKNPFL 185

Query: 181 MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG 240
           MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG
Sbjct: 186 MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG 245

Query: 241 EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRKLDEVAKYPDFFKHGLKKRLELRHRL 300
           E+VSLVTGYPPILIKSI+HSLEPRIRFLVEIMGRKL+EVAKYPDFFKHG KKRLELR +L
Sbjct: 246 EVVSLVTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGFKKRLELRQKL 305

Query: 301 LKENKVDFTLSELLECNQKKFMMKM 326
           L E KVDFTLSELLECNQKKFMMKM
Sbjct: 306 LIEKKVDFTLSELLECNQKKFMMKM 330

[Close]

BLAST of Spg006220 vs. ExPASy TrEMBL
Match: A0A6J1I081 (transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111468249 PE=3 SV=1)

HSP 1 Score: 585.1 bits (1507), Expect = 2.0e-163
Identity = 294/325 (90.46%), Postives = 306/325 (94.15%), Query Frame = 0


Query: 1   MEISASGNGTSMLWFFRDKGFDDRSIDNMFKKCRRLEGMQNERASENWDYLERIGIQKRK 60
           MEIS S NGTSMLWFFRDKGFDD SID MFKKCRRLEGMQNERA+ENW+YLE IGIQKRK
Sbjct: 1   MEISGSRNGTSMLWFFRDKGFDDGSIDKMFKKCRRLEGMQNERAAENWEYLEGIGIQKRK 60

Query: 61  LPSVVSKCPKILALGLHEKLVPMVECLGTLSTKPQEIASAIAKFPGILSYSVEEKLCPLL 120
           LPSVVSKCPKIL LGL EK+ PMVECL TL+TKP+EIA+AIAKFPGILSYSVEEKLCPLL
Sbjct: 61  LPSVVSKCPKILVLGLQEKIAPMVECLATLTTKPREIATAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVSEKQLGKMILLNPRLISYSIESKLIETVDFLAGIGLTKEGMIGKVLAKNPFL 180
           AFFQALGV EKQLGKMILLNPRLISYSIESKLIETVDFLAG+GLTKEGMIGKVL KNPFL
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLAGVGLTKEGMIGKVLVKNPFL 180

Query: 181 MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG 240
           +GYS+ KRLRPT EFLKSIGL EMDLQAVALKFPDILCRDVDKVLRPNL YLRR GFKDG
Sbjct: 181 IGYSVHKRLRPTFEFLKSIGLSEMDLQAVALKFPDILCRDVDKVLRPNLDYLRRRGFKDG 240

Query: 241 EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRKLDEVAKYPDFFKHGLKKRLELRHRL 300
           EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGR LDEVA+YP+FFKHGLKKRLELRHRL
Sbjct: 241 EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRTLDEVAEYPEFFKHGLKKRLELRHRL 300

Query: 301 LKENKVDFTLSELLECNQKKFMMKM 326
           LKE  +DFTLSELLECNQKKFMMKM
Sbjct: 301 LKEKTMDFTLSELLECNQKKFMMKM 325

[Close]

BLAST of Spg006220 vs. ExPASy TrEMBL
Match: A0A6J1GLD3 (transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111455322 PE=3 SV=1)

HSP 1 Score: 584.7 bits (1506), Expect = 2.6e-163
Identity = 294/325 (90.46%), Postives = 307/325 (94.46%), Query Frame = 0


Query: 1   MEISASGNGTSMLWFFRDKGFDDRSIDNMFKKCRRLEGMQNERASENWDYLERIGIQKRK 60
           MEIS S NGTSMLWFFRDKGFDD SID MFKKCRRLEGMQNERA+ENW+YLE IGIQKRK
Sbjct: 1   MEISGSRNGTSMLWFFRDKGFDDGSIDKMFKKCRRLEGMQNERAAENWEYLEGIGIQKRK 60

Query: 61  LPSVVSKCPKILALGLHEKLVPMVECLGTLSTKPQEIASAIAKFPGILSYSVEEKLCPLL 120
           LPSVVSKCPKIL LGL EK+ PMVECL TLSTKP+EIA+AIAKFPGILSYSVEEKLCPLL
Sbjct: 61  LPSVVSKCPKILVLGLQEKIAPMVECLATLSTKPREIATAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVSEKQLGKMILLNPRLISYSIESKLIETVDFLAGIGLTKEGMIGKVLAKNPFL 180
           AFFQALGV EKQLGKMILLNPRLISYSIESKLIETVDFLAG+GLTK+GMIGKVLAKNPFL
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLAGVGLTKDGMIGKVLAKNPFL 180

Query: 181 MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG 240
           +GYS+ KRLRPT EFLKSIGL EMDLQAVALKFPDILCRDVDKVLRPNL YLRR GFKDG
Sbjct: 181 IGYSVHKRLRPTFEFLKSIGLSEMDLQAVALKFPDILCRDVDKVLRPNLDYLRRRGFKDG 240

Query: 241 EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRKLDEVAKYPDFFKHGLKKRLELRHRL 300
           EIVSLVTGYPPILIKSIQHSLEPRI+FLVEIM RKLDEVA+YP+FFKHGLKKRLELRHRL
Sbjct: 241 EIVSLVTGYPPILIKSIQHSLEPRIKFLVEIMERKLDEVAEYPEFFKHGLKKRLELRHRL 300

Query: 301 LKENKVDFTLSELLECNQKKFMMKM 326
           LKE  +DFTLSELLECNQKKFMMKM
Sbjct: 301 LKEKTMDFTLSELLECNQKKFMMKM 325

[Close]

BLAST of Spg006220 vs. ExPASy TrEMBL
Match: A0A0A0K108 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G029940 PE=3 SV=1)

HSP 1 Score: 584.3 bits (1505), Expect = 3.3e-163
Identity = 294/325 (90.46%), Postives = 306/325 (94.15%), Query Frame = 0


Query: 1   MEISASGNGTSMLWFFRDKGFDDRSIDNMFKKCRRLEGMQNERASENWDYLERIGIQKRK 60
           ME SAS NG  MLWFFRDKGFDDRSID MF+KCRRLE MQNERASENW+YLERIGIQKRK
Sbjct: 1   MESSASRNGNCMLWFFRDKGFDDRSIDKMFRKCRRLEDMQNERASENWEYLERIGIQKRK 60

Query: 61  LPSVVSKCPKILALGLHEKLVPMVECLGTLSTKPQEIASAIAKFPGILSYSVEEKLCPLL 120
           LPSVVSKCPKILALGL EKLVPMVECL TLSTKP EIA+AIAKFPGILSYSVEEKLCPLL
Sbjct: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVSEKQLGKMILLNPRLISYSIESKLIETVDFLAGIGLTKEGMIGKVLAKNPFL 180
           AFFQALGV EKQLGKMILLNPRLISYSIESKL+ETVDFLAG+GLTKEG+IGKVLAKNPFL
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180

Query: 181 MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG 240
           MGYS+DKRLRPT EFLKSIGL +MDLQAVALKFPDILCRDVDKVLR NL YLR  GFKDG
Sbjct: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRYNLDYLRSRGFKDG 240

Query: 241 EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRKLDEVAKYPDFFKHGLKKRLELRHRL 300
           EIVSLVTGYPP+LIKSIQHSLEPRIRFLVEIMGRKL+EVA+YPDFFKHGLKK+LELRHRL
Sbjct: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRL 300

Query: 301 LKENKVDFTLSELLECNQKKFMMKM 326
           LKE  VDF LSELLECNQKKFMMKM
Sbjct: 301 LKEKNVDFALSELLECNQKKFMMKM 325

[Close]

BLAST of Spg006220 vs. ExPASy TrEMBL
Match: A0A5A7UUK2 (Transcription termination factor MTERF6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold640G00330 PE=3 SV=1)

HSP 1 Score: 583.6 bits (1503), Expect = 5.7e-163
Identity = 293/325 (90.15%), Postives = 305/325 (93.85%), Query Frame = 0


Query: 1   MEISASGNGTSMLWFFRDKGFDDRSIDNMFKKCRRLEGMQNERASENWDYLERIGIQKRK 60
           ME SAS NG  MLWFFRDKGFDDRSID MF+KCRRLE  QNERASENW+YLERIGIQKRK
Sbjct: 8   MESSASQNGNCMLWFFRDKGFDDRSIDKMFRKCRRLEDTQNERASENWEYLERIGIQKRK 67

Query: 61  LPSVVSKCPKILALGLHEKLVPMVECLGTLSTKPQEIASAIAKFPGILSYSVEEKLCPLL 120
           LPSVVSKCPKILALGL EKLVPMVECL TLSTKP EIA+AIAKFPGILSYSVEEKLCPLL
Sbjct: 68  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 127

Query: 121 AFFQALGVSEKQLGKMILLNPRLISYSIESKLIETVDFLAGIGLTKEGMIGKVLAKNPFL 180
           AFFQALGV EK LGKMILLNPRLISYSIESKL+ETVDFLAG+GLTKEG+IGKVLAKNPFL
Sbjct: 128 AFFQALGVPEKHLGKMILLNPRLISYSIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 187

Query: 181 MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG 240
           MGYS+DKRLRPT EFLKSIGL +MDLQAVALKFPDILCRDVDKVLR NL YLR  GFKDG
Sbjct: 188 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRSNLDYLRSRGFKDG 247

Query: 241 EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRKLDEVAKYPDFFKHGLKKRLELRHRL 300
           EIVS+VTGYPP+LIKSIQHSLEPRIRFLVEIMGRKLDEVA+YPDFFKHGLKK+LELRHRL
Sbjct: 248 EIVSMVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLDEVAEYPDFFKHGLKKKLELRHRL 307

Query: 301 LKENKVDFTLSELLECNQKKFMMKM 326
           LKE  VDFTLSELLECNQKKFMMKM
Sbjct: 308 LKEKNVDFTLSELLECNQKKFMMKM 332

[Close]

BLAST of Spg006220 vs. TAIR 10
Match: AT4G38160.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 435.6 bits (1119), Expect = 3.7e-122
Identity = 210/319 (65.83%), Postives = 264/319 (82.76%), Query Frame = 0


Query: 8   NGTSMLWFFRDKGFDDRSIDNMFKKCRRLEGMQNERASENWDYLERI-GIQKRKLPSVVS 67
           N +S++WFFRDKGFDD SID M +KC++LE  Q++ ASENWDYL  I GIQ+RKLP +VS
Sbjct: 5   NTSSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVS 64

Query: 68  KCPKILALGLHEKLVPMVECLGTLSTKPQEIASAIAKFPGILSYSVEEKLCPLLAFFQAL 127
           +CPKIL L L E+L+PMVECL +L   P+E+ASAI KFP ILS+SVEEKLCPLLAFFQAL
Sbjct: 65  RCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQAL 124

Query: 128 GVSEKQLGKMILLNPRLISYSIESKLIETVDFLAGIGLTKEGMIGKVLAKNPFLMGYSID 187
           GV E QLGKMIL NPRLISYSI++KL   V FLA +GL ++GMIGKVL KNPFLMGYS+D
Sbjct: 125 GVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVD 184

Query: 188 KRLRPTSEFLK-SIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDGEIVSL 247
           KRLRPT+EFLK S+GL E  +++V + FP +LCRDV+K+L+PN  YL+ CGF D +I ++
Sbjct: 185 KRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATM 244

Query: 248 VTGYPPILIKSIQHSLEPRIRFLVEIMGRKLDEVAKYPDFFKHGLKKRLELRHRLLKENK 307
           VTGYP ILIKS+++SL+PRIRFLV++MGR +DEVA YP+FF HGLKK++E R +L+K+N 
Sbjct: 245 VTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNN 304

Query: 308 VDFTLSELLECNQKKFMMK 325
           +D +L E+L+CN KKF  K
Sbjct: 305 IDCSLREMLDCNTKKFHEK 323

[Close]

BLAST of Spg006220 vs. TAIR 10
Match: AT4G38160.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 435.6 bits (1119), Expect = 3.7e-122
Identity = 210/319 (65.83%), Postives = 264/319 (82.76%), Query Frame = 0


Query: 8   NGTSMLWFFRDKGFDDRSIDNMFKKCRRLEGMQNERASENWDYLERI-GIQKRKLPSVVS 67
           N +S++WFFRDKGFDD SID M +KC++LE  Q++ ASENWDYL  I GIQ+RKLP +VS
Sbjct: 5   NTSSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVS 64

Query: 68  KCPKILALGLHEKLVPMVECLGTLSTKPQEIASAIAKFPGILSYSVEEKLCPLLAFFQAL 127
           +CPKIL L L E+L+PMVECL +L   P+E+ASAI KFP ILS+SVEEKLCPLLAFFQAL
Sbjct: 65  RCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQAL 124

Query: 128 GVSEKQLGKMILLNPRLISYSIESKLIETVDFLAGIGLTKEGMIGKVLAKNPFLMGYSID 187
           GV E QLGKMIL NPRLISYSI++KL   V FLA +GL ++GMIGKVL KNPFLMGYS+D
Sbjct: 125 GVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVD 184

Query: 188 KRLRPTSEFLK-SIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDGEIVSL 247
           KRLRPT+EFLK S+GL E  +++V + FP +LCRDV+K+L+PN  YL+ CGF D +I ++
Sbjct: 185 KRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATM 244

Query: 248 VTGYPPILIKSIQHSLEPRIRFLVEIMGRKLDEVAKYPDFFKHGLKKRLELRHRLLKENK 307
           VTGYP ILIKS+++SL+PRIRFLV++MGR +DEVA YP+FF HGLKK++E R +L+K+N 
Sbjct: 245 VTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNN 304

Query: 308 VDFTLSELLECNQKKFMMK 325
           +D +L E+L+CN KKF  K
Sbjct: 305 IDCSLREMLDCNTKKFHEK 323

[Close]

BLAST of Spg006220 vs. TAIR 10
Match: AT4G38160.3 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 435.6 bits (1119), Expect = 3.7e-122
Identity = 210/319 (65.83%), Postives = 264/319 (82.76%), Query Frame = 0


Query: 8   NGTSMLWFFRDKGFDDRSIDNMFKKCRRLEGMQNERASENWDYLERI-GIQKRKLPSVVS 67
           N +S++WFFRDKGFDD SID M +KC++LE  Q++ ASENWDYL  I GIQ+RKLP +VS
Sbjct: 5   NTSSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVS 64

Query: 68  KCPKILALGLHEKLVPMVECLGTLSTKPQEIASAIAKFPGILSYSVEEKLCPLLAFFQAL 127
           +CPKIL L L E+L+PMVECL +L   P+E+ASAI KFP ILS+SVEEKLCPLLAFFQAL
Sbjct: 65  RCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQAL 124

Query: 128 GVSEKQLGKMILLNPRLISYSIESKLIETVDFLAGIGLTKEGMIGKVLAKNPFLMGYSID 187
           GV E QLGKMIL NPRLISYSI++KL   V FLA +GL ++GMIGKVL KNPFLMGYS+D
Sbjct: 125 GVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVD 184

Query: 188 KRLRPTSEFLK-SIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDGEIVSL 247
           KRLRPT+EFLK S+GL E  +++V + FP +LCRDV+K+L+PN  YL+ CGF D +I ++
Sbjct: 185 KRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATM 244

Query: 248 VTGYPPILIKSIQHSLEPRIRFLVEIMGRKLDEVAKYPDFFKHGLKKRLELRHRLLKENK 307
           VTGYP ILIKS+++SL+PRIRFLV++MGR +DEVA YP+FF HGLKK++E R +L+K+N 
Sbjct: 245 VTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNN 304

Query: 308 VDFTLSELLECNQKKFMMK 325
           +D +L E+L+CN KKF  K
Sbjct: 305 IDCSLREMLDCNTKKFHEK 323

[Close]

BLAST of Spg006220 vs. TAIR 10
Match: AT1G78930.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 132.9 bits (333), Expect = 5.1e-31
Identity = 83/282 (29.43%), Postives = 146/282 (51.77%), Query Frame = 0


Query: 51  LERIGIQKRKLPSVVSKCPKILALGLHEKLVPMVECLGTLSTKPQEIASAIAKFPGILSY 110
           +E++ +  +    ++ K P IL+  + E    +     + S    +I  AI ++P +L  
Sbjct: 307 MEKVSVVNKDSGKLLLKYPWILSPSIQENYSHIGSFFYSESVLKMDIDHAIRRWPLLLGC 366

Query: 111 SVEEKLCPLLAFFQALGVSEKQLGKMILLNPRLISYSIESKLIETVDFLAGIGLTKEGMI 170
           S    +  ++  F  LGV +K++GK+I   P+L+      + ++ V FL  +G  KE ++
Sbjct: 367 SA-SNMEMMVKEFDKLGVRDKRMGKVIPKMPQLLLCK-PQEFLKVVCFLEDLGFQKE-IV 426

Query: 171 GKVLAKNPFLMGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLV 230
           G++L + P + G SI+K L+    FL   G+       +  K+P+ L  D DK + P L 
Sbjct: 427 GQILCRCPEIFGCSIEKTLQKKLIFLTRFGVSTTHFPRIIKKYPEFLIYDADKTVLPRLK 486

Query: 231 YLRRCGFKDGEIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRKLDEVAKYPDFFKHGL 290
           YL   G  + EI  ++  + PIL  SI   L P+  FLV  M + + EV +YP +F + L
Sbjct: 487 YLMEIGISEREIAFMIRKFSPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYSL 546

Query: 291 KKRLELRHRLLKENKVDFTLSELLECNQKKFMMKMVKVKSIQ 333
           +KR++ R R+LK   ++ TL E+L  N ++F    + +  +Q
Sbjct: 547 EKRIKPRFRVLKGRNIECTLQEMLGKNDEEFAADFLGLGELQ 585

[Close]

BLAST of Spg006220 vs. TAIR 10
Match: AT4G14605.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 131.3 bits (329), Expect = 1.5e-30
Identity = 88/299 (29.43%), Postives = 158/299 (52.84%), Query Frame = 0


Query: 50  YLERIGIQKRKLPSVVSKCPKILALGLHEKLVPMVECLGTLSTKPQEIASAIAKFPGILS 109
           YL  +G+   ++ ++  K        L  K+ P+VE L  L     +I + + K P I  
Sbjct: 202 YLLDLGLNLEQIKTITRKFAAFPYYSLDGKIKPVVEFLLDLGIPKSDIPTILCKRPQICG 261

Query: 110 YSVEEKLCPLLAFFQALGVSEKQLGKMILLNPRLISYSIESKLIETVDFLAGIGLTKEGM 169
            S+ + L P +AF + LG+ + Q  K+I   P +++YS   KL  TV+FL+  GLT+E  
Sbjct: 262 ISLTDNLKPTMAFLETLGIDKNQWAKIISRFPAILTYS-RQKLTSTVEFLSQTGLTEE-Q 321

Query: 170 IGKVLAKNPFLMGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNL 229
           IG++L + P +M YS++ +LRPT E+ +S+    +D+  +  + P      ++  L+P  
Sbjct: 322 IGRILTRCPNIMSYSVEDKLRPTMEYFRSL---NVDVAVLLHRCPQTFGLSIESNLKPVT 381

Query: 230 VYLRRCGFKDGEIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRKLDEVAKYPDFFKHG 289
            +    GF   EI  +++ Y  +   S++ ++ P+  +  + M     E+ K+P FF + 
Sbjct: 382 EFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPKWDYF-QTMDYPKSELVKFPQFFGYS 441

Query: 290 LKKRLELRHRLLKENKVDFTLSELLECN-------QKKFMMKMVKVKSIQPAEQNSVGL 342
           L++R++ R+ L++ + V   L+++L  +        KK MMK+V    I  AEQ+S GL
Sbjct: 442 LQERIKPRYELVQRSGVRLLLNQVLSLSGIEFEKVVKKKMMKLVSNNVI--AEQSSGGL 492

The following BLAST results are available for this feature:

BLAST of Spg006220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135779.1	1.4e-168	92.92	transcription termination factor MTERF6, chloroplastic/mitochondrial [Momordica ...	[more]
XP_038887558.1	2.5e-165	90.46	transcription termination factor MTERF6, chloroplastic/mitochondrial [Benincasa ...	[more]
XP_023554548.1	1.1e-163	90.77	transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucurbita ...	[more]
KAG7011838.1	1.8e-163	90.46	Transcription termination factor MTERF6, chloroplastic/mitochondrial, partial [C...	[more]
XP_022969173.1	4.1e-163	90.46	transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucurbita ...	[more]

BLAST of Spg006220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL6	5.2e-121	65.83	Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop...	[more]
F4JVI3	2.1e-29	29.43	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]
F4IHL3	4.7e-29	25.32	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9FM80	2.1e-21	28.70	Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q84X53	8.0e-21	29.59	Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX...	[more]

BLAST of Spg006220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2G0	7.0e-169	92.92	transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Momordic...	[more]
A0A6J1I081	2.0e-163	90.46	transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Cucurbit...	[more]
A0A6J1GLD3	2.6e-163	90.46	transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Cucurbit...	[more]
A0A0A0K108	3.3e-163	90.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G029940 PE=3 SV=1	[more]
A0A5A7UUK2	5.7e-163	90.15	Transcription termination factor MTERF6 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Spg006220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38160.1	3.7e-122	65.83	Mitochondrial transcription termination factor family protein	[more]
AT4G38160.2	3.7e-122	65.83	Mitochondrial transcription termination factor family protein	[more]
AT4G38160.3	3.7e-122	65.83	Mitochondrial transcription termination factor family protein	[more]
AT1G78930.1	5.1e-31	29.43	Mitochondrial transcription termination factor family protein	[more]
AT4G14605.1	1.5e-30	29.43	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 27..57 e-value: 570.0 score: 5.8 coord: 207..238 e-value: 0.11 score: 21.7 coord: 62..93 e-value: 99.0 score: 11.7 coord: 98..129 e-value: 2.4E-4 score: 30.5 coord: 276..307 e-value: 7.9 score: 15.4 coord: 134..165 e-value: 5.9E-5 score: 32.5 coord: 243..275 e-value: 0.21 score: 20.6 coord: 171..202 e-value: 3.0E-5 score: 33.4
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 169..321 e-value: 2.1E-31 score: 109.0 coord: 7..167 e-value: 7.0E-24 score: 84.3
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 11..327
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 95..332 e-value: 8.5E-56 score: 191.0
None	No IPR available	PANTHER	PTHR13068:SF5	TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIAL	coord: 11..327

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006220.1	Spg006220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0032502	developmental process
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003690	double-stranded DNA binding