Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAGGAGTTTCAAAGCACTGGAAACTGGTGGGATGCTTGTAGAAGCCGCTACGACGCTGGAATATCCCCTTCCTCCTCCTCCATCACCACCTTCGTCGACCACTCCGACTCCTCCGCCGCCGCCGACCCCAATTTGCACATCATGGGCTTGGGCCTCGATTGGAACCAACCCCTCTTGTAATTAATTAGCCTCTAACTCACTACTCCATCTTTTTTTCAATTTCTTTTGTTTTATTAATATTAATCTGGTGTTTGTTGGTGATAGCAGCAGATTCAATGGATGAGATCGGAGAAGCTTTATTCAGGGGACTCCACCGAATTCAAGCCCATCAACAAAGGCTTCTCCTTAGACCATCATCACCCGCACTTCACCCCTTCTCACTACACCTCCGCCGCCGCCATTTTATACGCAAATTCCGCTACATTATTACAAGGCTTATTAGCCGGCGGCGAACAACAGCAAGCTTCGGCGGGTATGAACTTCCCAGCTTACAGTGGGCATTTCGGGATGAACTCCGACTAAGCGGGCATTTCGGGATGAACTCCGACGAGCTAATACGGCGACGTCGTGGTCCAGCTCTAAAGTTCCTCAGTTCTTAAGAAACTCGCCGCCGAAAGGGGCGGCACCCCACAGTCAGTTGCAGTTTTCTAACAACATGGCGTTTTGGAACACGTCGGATATGAAAGACGTGAGAAGAAGAGAAGAGGAAGAGGAGGAGAAGAAATTGTCGCCAGCGGTCGTCGGTGGCCGGCCACCGGAGTTAAAGAACACTACAAGATTTTCGGTCTACGCCGACGCATCGATGCGTCGGCGTAAACCCCCTTTGCGTCGGCATAGACAGCTCCCCGACGCGAAAATTGCGTCGGCATGGTCGTCGGTGTAG
mRNA sequence
ATGGCGGAGGAGTTTCAAAGCACTGGAAACTGGTGGGATGCTTGTAGAAGCCGCTACGACGCTGGAATATCCCCTTCCTCCTCCTCCATCACCACCTTCGTCGACCACTCCGACTCCTCCGCCGCCGCCGACCCCAATTTGCACATCATGGGCTTGGGCCTCGATTGGAACCAACCCCTCTTATCGGAGAAGCTTTATTCAGGGGACTCCACCGAATTCAAGCCCATCAACAAAGGCTTCTCCTTAGACCATCATCACCCGCACTTCACCCCTTCTCACTACACCTCCGCCGCCGCCATTTTATACGCAAATTCCGCTACATTATTACAAGGCTTATTAGCCGGCGGCGAACAACAGCAAGCTTCGGCGGCTAATACGGCGACGTCGTGGTCCAGCTCTAAAGTTCCTCAGTTCTTAAGAAACTCGCCGCCGAAAGGGGCGGCACCCCACAGTCAGTTGCAGTTTTCTAACAACATGGCGTTTTGGAACACGTCGGATATGAAAGACGTGAGAAGAAGAGAAGAGGAAGAGGAGGAGAAGAAATTGTCGCCAGCGGTCGTCGGTGGCCGGCCACCGGAGTTAAAGAACACTACAAGATTTTCGGTCTACGCCGACGCATCGATGCGTCGGCGTAAACCCCCTTTGCGTCGGCATAGACAGCTCCCCGACGCGAAAATTGCGTCGGCATGGTCGTCGGTGTAG
Coding sequence (CDS)
ATGGCGGAGGAGTTTCAAAGCACTGGAAACTGGTGGGATGCTTGTAGAAGCCGCTACGACGCTGGAATATCCCCTTCCTCCTCCTCCATCACCACCTTCGTCGACCACTCCGACTCCTCCGCCGCCGCCGACCCCAATTTGCACATCATGGGCTTGGGCCTCGATTGGAACCAACCCCTCTTATCGGAGAAGCTTTATTCAGGGGACTCCACCGAATTCAAGCCCATCAACAAAGGCTTCTCCTTAGACCATCATCACCCGCACTTCACCCCTTCTCACTACACCTCCGCCGCCGCCATTTTATACGCAAATTCCGCTACATTATTACAAGGCTTATTAGCCGGCGGCGAACAACAGCAAGCTTCGGCGGCTAATACGGCGACGTCGTGGTCCAGCTCTAAAGTTCCTCAGTTCTTAAGAAACTCGCCGCCGAAAGGGGCGGCACCCCACAGTCAGTTGCAGTTTTCTAACAACATGGCGTTTTGGAACACGTCGGATATGAAAGACGTGAGAAGAAGAGAAGAGGAAGAGGAGGAGAAGAAATTGTCGCCAGCGGTCGTCGGTGGCCGGCCACCGGAGTTAAAGAACACTACAAGATTTTCGGTCTACGCCGACGCATCGATGCGTCGGCGTAAACCCCCTTTGCGTCGGCATAGACAGCTCCCCGACGCGAAAATTGCGTCGGCATGGTCGTCGGTGTAG
Protein sequence
MAEEFQSTGNWWDACRSRYDAGISPSSSSITTFVDHSDSSAAADPNLHIMGLGLDWNQPLLSEKLYSGDSTEFKPINKGFSLDHHHPHFTPSHYTSAAAILYANSATLLQGLLAGGEQQQASAANTATSWSSSKVPQFLRNSPPKGAAPHSQLQFSNNMAFWNTSDMKDVRRREEEEEEKKLSPAVVGGRPPELKNTTRFSVYADASMRRRKPPLRRHRQLPDAKIASAWSSV
Homology
BLAST of Spg006204 vs. NCBI nr
Match:
XP_023546795.1 (transcription factor bHLH123-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 230.7 bits (587), Expect = 1.3e-56
Identity = 143/254 (56.30%), Postives = 152/254 (59.84%), Query Frame = 0
Query: 1 MAEEFQSTGNWWDACRSRYDAGISPSSSSITTFVDHSDSSA-AADPNLHIMGLGLDWNQP 60
MAEEFQSTGNWWDA RSRY+AGISPSSS+ITTFVDH DS A A DPNLHIMGLGLDWNQP
Sbjct: 1 MAEEFQSTGNWWDASRSRYEAGISPSSSAITTFVDHPDSGAGAGDPNLHIMGLGLDWNQP 60
Query: 61 LL-------------------------------------------SEKLYSGDS--TEFK 120
L SEKLYSG+S TEFK
Sbjct: 61 LFRGGGEKAAESSFRSMLQPDNMNLNMQETGQHHQHQQQQIQWMRSEKLYSGESPATEFK 120
Query: 121 PINKGFSLDHHH---PHFTPSHYT------------SAAAILYANSATLLQGLLAGG--E 172
PIN+GFSLDHH+ P F+PSHY+ +AAA LY NS TLLQGLLAGG E
Sbjct: 121 PINRGFSLDHHNQPPPQFSPSHYSTGDSTITSFPIDTAAAALYGNSTTLLQGLLAGGGSE 180
BLAST of Spg006204 vs. NCBI nr
Match:
KAG6600752.1 (Transcription factor basic helix-loop-helix 123, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 228.4 bits (581), Expect = 6.3e-56
Identity = 142/256 (55.47%), Postives = 152/256 (59.38%), Query Frame = 0
Query: 1 MAEEFQSTGNWWDACRSRYDAGISPSSSSITTFVDHSDSSA-AADPNLHIMGLGLDWNQP 60
MAEEFQS+GNWWDA RSRY+AGISPSSS+ITTFVDH DS A A DPNLHIMGLGLDWNQP
Sbjct: 1 MAEEFQSSGNWWDATRSRYEAGISPSSSAITTFVDHPDSGAGAGDPNLHIMGLGLDWNQP 60
Query: 61 LL-------------------------------------------SEKLYSGDS--TEFK 120
L SEKLYSG+S TEFK
Sbjct: 61 LFRGGGEKAAESSFRSMLQPDNMNLNMQETGQHHQHQQQQIQWMRSEKLYSGESPATEFK 120
Query: 121 PINKGFSLDHHH---PHFTPSHYT--------------SAAAILYANSATLLQGLLAGG- 172
PIN+GFSLDHH+ P F+PSHY+ +AAA LY NS TLLQGLLAGG
Sbjct: 121 PINRGFSLDHHNQPPPQFSPSHYSTGDSTITSFPLDTAAAAAALYGNSTTLLQGLLAGGG 180
BLAST of Spg006204 vs. NCBI nr
Match:
XP_022992590.1 (transcription factor bHLH123-like isoform X1 [Cucurbita maxima])
HSP 1 Score: 228.4 bits (581), Expect = 6.3e-56
Identity = 142/254 (55.91%), Postives = 151/254 (59.45%), Query Frame = 0
Query: 1 MAEEFQSTGNWWDACRSRYDAGISPSSSSITTFVDHSDSSA-AADPNLHIMGLGLDWNQP 60
MAEEFQSTGNWWDA RSRY+AGISPSSS+ITTFVDH D+ A A DPNLHIMGLGLDWNQP
Sbjct: 1 MAEEFQSTGNWWDASRSRYEAGISPSSSAITTFVDHPDAGAGAGDPNLHIMGLGLDWNQP 60
Query: 61 LL-------------------------------------------SEKLYSGDS--TEFK 120
L SEKLYSG+S TEFK
Sbjct: 61 LFRGGGEKGAESSFRSMLQPDNMNLNMQETGQHHQHEQQQIQWMRSEKLYSGESPATEFK 120
Query: 121 PINKGFSLDHHH---PHFTPSHYT------------SAAAILYANSATLLQGLLAGG--E 172
PIN+GFSLDHH+ P F+PSHY+ SAAA LY NS TLLQGLLAGG E
Sbjct: 121 PINRGFSLDHHNQPPPQFSPSHYSTGDSTVTSFPIDSAAAALYVNSTTLLQGLLAGGGSE 180
BLAST of Spg006204 vs. NCBI nr
Match:
XP_022941616.1 (transcription factor bHLH123-like isoform X2 [Cucurbita moschata])
HSP 1 Score: 228.4 bits (581), Expect = 6.3e-56
Identity = 142/256 (55.47%), Postives = 152/256 (59.38%), Query Frame = 0
Query: 1 MAEEFQSTGNWWDACRSRYDAGISPSSSSITTFVDHSDSSA-AADPNLHIMGLGLDWNQP 60
MAEEFQS+GNWWDA RSRY+AGISPSSS+ITTFVDH DS A A DPNLHIMGLGLDWNQP
Sbjct: 1 MAEEFQSSGNWWDATRSRYEAGISPSSSAITTFVDHPDSGAGAGDPNLHIMGLGLDWNQP 60
Query: 61 LL-------------------------------------------SEKLYSGDS--TEFK 120
L SEKLYSG+S TEFK
Sbjct: 61 LFRGGGEKAAESSFRSMLQPDNMNLNMQETGQHHQHQQQQIQWMRSEKLYSGESPATEFK 120
Query: 121 PINKGFSLDHHH---PHFTPSHYT--------------SAAAILYANSATLLQGLLAGG- 172
PIN+GFSLDHH+ P F+PSHY+ +AAA LY NS TLLQGLLAGG
Sbjct: 121 PINRGFSLDHHNQPPPQFSPSHYSTGDSTITSFPLDTAAAAAALYGNSTTLLQGLLAGGG 180
BLAST of Spg006204 vs. NCBI nr
Match:
XP_022941615.1 (transcription factor bHLH123-like isoform X1 [Cucurbita moschata])
HSP 1 Score: 228.4 bits (581), Expect = 6.3e-56
Identity = 142/256 (55.47%), Postives = 152/256 (59.38%), Query Frame = 0
Query: 1 MAEEFQSTGNWWDACRSRYDAGISPSSSSITTFVDHSDSSA-AADPNLHIMGLGLDWNQP 60
MAEEFQS+GNWWDA RSRY+AGISPSSS+ITTFVDH DS A A DPNLHIMGLGLDWNQP
Sbjct: 1 MAEEFQSSGNWWDATRSRYEAGISPSSSAITTFVDHPDSGAGAGDPNLHIMGLGLDWNQP 60
Query: 61 LL-------------------------------------------SEKLYSGDS--TEFK 120
L SEKLYSG+S TEFK
Sbjct: 61 LFRGGGEKAAESSFRSMLQPDNMNLNMQETGQHHQHQQQQIQWMRSEKLYSGESPATEFK 120
Query: 121 PINKGFSLDHHH---PHFTPSHYT--------------SAAAILYANSATLLQGLLAGG- 172
PIN+GFSLDHH+ P F+PSHY+ +AAA LY NS TLLQGLLAGG
Sbjct: 121 PINRGFSLDHHNQPPPQFSPSHYSTGDSTITSFPLDTAAAAAALYGNSTTLLQGLLAGGG 180
BLAST of Spg006204 vs. ExPASy TrEMBL
Match:
A0A6J1JQB5 (transcription factor bHLH123-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488889 PE=4 SV=1)
HSP 1 Score: 228.4 bits (581), Expect = 3.1e-56
Identity = 142/254 (55.91%), Postives = 151/254 (59.45%), Query Frame = 0
Query: 1 MAEEFQSTGNWWDACRSRYDAGISPSSSSITTFVDHSDSSA-AADPNLHIMGLGLDWNQP 60
MAEEFQSTGNWWDA RSRY+AGISPSSS+ITTFVDH D+ A A DPNLHIMGLGLDWNQP
Sbjct: 1 MAEEFQSTGNWWDASRSRYEAGISPSSSAITTFVDHPDAGAGAGDPNLHIMGLGLDWNQP 60
Query: 61 LL-------------------------------------------SEKLYSGDS--TEFK 120
L SEKLYSG+S TEFK
Sbjct: 61 LFRGGGEKGAESSFRSMLQPDNMNLNMQETGQHHQHEQQQIQWMRSEKLYSGESPATEFK 120
Query: 121 PINKGFSLDHHH---PHFTPSHYT------------SAAAILYANSATLLQGLLAGG--E 172
PIN+GFSLDHH+ P F+PSHY+ SAAA LY NS TLLQGLLAGG E
Sbjct: 121 PINRGFSLDHHNQPPPQFSPSHYSTGDSTVTSFPIDSAAAALYVNSTTLLQGLLAGGGSE 180
BLAST of Spg006204 vs. ExPASy TrEMBL
Match:
A0A6J1JW46 (transcription factor bHLH123-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488889 PE=4 SV=1)
HSP 1 Score: 228.4 bits (581), Expect = 3.1e-56
Identity = 142/254 (55.91%), Postives = 151/254 (59.45%), Query Frame = 0
Query: 1 MAEEFQSTGNWWDACRSRYDAGISPSSSSITTFVDHSDSSA-AADPNLHIMGLGLDWNQP 60
MAEEFQSTGNWWDA RSRY+AGISPSSS+ITTFVDH D+ A A DPNLHIMGLGLDWNQP
Sbjct: 1 MAEEFQSTGNWWDASRSRYEAGISPSSSAITTFVDHPDAGAGAGDPNLHIMGLGLDWNQP 60
Query: 61 LL-------------------------------------------SEKLYSGDS--TEFK 120
L SEKLYSG+S TEFK
Sbjct: 61 LFRGGGEKGAESSFRSMLQPDNMNLNMQETGQHHQHEQQQIQWMRSEKLYSGESPATEFK 120
Query: 121 PINKGFSLDHHH---PHFTPSHYT------------SAAAILYANSATLLQGLLAGG--E 172
PIN+GFSLDHH+ P F+PSHY+ SAAA LY NS TLLQGLLAGG E
Sbjct: 121 PINRGFSLDHHNQPPPQFSPSHYSTGDSTVTSFPIDSAAAALYVNSTTLLQGLLAGGGSE 180
BLAST of Spg006204 vs. ExPASy TrEMBL
Match:
A0A6J1FLL0 (transcription factor bHLH123-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446921 PE=4 SV=1)
HSP 1 Score: 228.4 bits (581), Expect = 3.1e-56
Identity = 142/256 (55.47%), Postives = 152/256 (59.38%), Query Frame = 0
Query: 1 MAEEFQSTGNWWDACRSRYDAGISPSSSSITTFVDHSDSSA-AADPNLHIMGLGLDWNQP 60
MAEEFQS+GNWWDA RSRY+AGISPSSS+ITTFVDH DS A A DPNLHIMGLGLDWNQP
Sbjct: 1 MAEEFQSSGNWWDATRSRYEAGISPSSSAITTFVDHPDSGAGAGDPNLHIMGLGLDWNQP 60
Query: 61 LL-------------------------------------------SEKLYSGDS--TEFK 120
L SEKLYSG+S TEFK
Sbjct: 61 LFRGGGEKAAESSFRSMLQPDNMNLNMQETGQHHQHQQQQIQWMRSEKLYSGESPATEFK 120
Query: 121 PINKGFSLDHHH---PHFTPSHYT--------------SAAAILYANSATLLQGLLAGG- 172
PIN+GFSLDHH+ P F+PSHY+ +AAA LY NS TLLQGLLAGG
Sbjct: 121 PINRGFSLDHHNQPPPQFSPSHYSTGDSTITSFPLDTAAAAAALYGNSTTLLQGLLAGGG 180
BLAST of Spg006204 vs. ExPASy TrEMBL
Match:
A0A6J1FU65 (transcription factor bHLH123-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446921 PE=4 SV=1)
HSP 1 Score: 228.4 bits (581), Expect = 3.1e-56
Identity = 142/256 (55.47%), Postives = 152/256 (59.38%), Query Frame = 0
Query: 1 MAEEFQSTGNWWDACRSRYDAGISPSSSSITTFVDHSDSSA-AADPNLHIMGLGLDWNQP 60
MAEEFQS+GNWWDA RSRY+AGISPSSS+ITTFVDH DS A A DPNLHIMGLGLDWNQP
Sbjct: 1 MAEEFQSSGNWWDATRSRYEAGISPSSSAITTFVDHPDSGAGAGDPNLHIMGLGLDWNQP 60
Query: 61 LL-------------------------------------------SEKLYSGDS--TEFK 120
L SEKLYSG+S TEFK
Sbjct: 61 LFRGGGEKAAESSFRSMLQPDNMNLNMQETGQHHQHQQQQIQWMRSEKLYSGESPATEFK 120
Query: 121 PINKGFSLDHHH---PHFTPSHYT--------------SAAAILYANSATLLQGLLAGG- 172
PIN+GFSLDHH+ P F+PSHY+ +AAA LY NS TLLQGLLAGG
Sbjct: 121 PINRGFSLDHHNQPPPQFSPSHYSTGDSTITSFPLDTAAAAAALYGNSTTLLQGLLAGGG 180
BLAST of Spg006204 vs. ExPASy TrEMBL
Match:
A0A5D3C2V6 (Transcription factor bHLH123 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00680 PE=4 SV=1)
HSP 1 Score: 201.8 bits (512), Expect = 3.1e-48
Identity = 136/270 (50.37%), Postives = 145/270 (53.70%), Query Frame = 0
Query: 1 MAEEFQSTGNWWDACRSRYDAGISPSSSSITTFVDHSDSSAAA-DPNLHIMGLGLDWNQP 60
MAEEFQSTGNWW+A + ISPSSSSITTFVDHSDS+AAA DPNLHIMGLGLDWNQP
Sbjct: 1 MAEEFQSTGNWWEAA-----SRISPSSSSITTFVDHSDSAAAASDPNLHIMGLGLDWNQP 60
Query: 61 LL------------------------------------------------SEKLYSGDS- 120
L SEKLYSG+S
Sbjct: 61 LFRGGGEKAAEGSFRSMLQPDNMNLNMEETGQQQQQQQQEQQQQQIQWMRSEKLYSGESP 120
Query: 121 -TEFKPINKGFSLDHHHPHF-----------TPSHYTS-----------AAAILYANSAT 172
TEFKPIN+GFSLDHHH H +PSHY+S A LY NSAT
Sbjct: 121 ATEFKPINRGFSLDHHHHHHHHQHQAQPQFSSPSHYSSGDSAVTSYPIDTNANLYGNSAT 180
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_023546795.1 | 1.3e-56 | 56.30 | transcription factor bHLH123-like [Cucurbita pepo subsp. pepo] | [more] |
| KAG6600752.1 | 6.3e-56 | 55.47 | Transcription factor basic helix-loop-helix 123, partial [Cucurbita argyrosperma... | [more] |
| XP_022992590.1 | 6.3e-56 | 55.91 | transcription factor bHLH123-like isoform X1 [Cucurbita maxima] | [more] |
| XP_022941616.1 | 6.3e-56 | 55.47 | transcription factor bHLH123-like isoform X2 [Cucurbita moschata] | [more] |
| XP_022941615.1 | 6.3e-56 | 55.47 | transcription factor bHLH123-like isoform X1 [Cucurbita moschata] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1JQB5 | 3.1e-56 | 55.91 | transcription factor bHLH123-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1... | [more] |
| A0A6J1JW46 | 3.1e-56 | 55.91 | transcription factor bHLH123-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1... | [more] |
| A0A6J1FLL0 | 3.1e-56 | 55.47 | transcription factor bHLH123-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LO... | [more] |
| A0A6J1FU65 | 3.1e-56 | 55.47 | transcription factor bHLH123-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LO... | [more] |
| A0A5D3C2V6 | 3.1e-48 | 50.37 | Transcription factor bHLH123 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
