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Spg006179 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAAATTTCATAAATTAAATAATTTAATTAAAAAAAAAAACAAAGAAAGAAGAAGAAGATGTAGGAAGTTTCAAAAAAGAAAAGGAAAAGGCCCCTTTTTCGAGCAGCGGCGGCAGGGTTTAGCATTTGAATGCCCTAAGTCTAAGACGGAGCTCCGTTCATCGTGGCTGATTGCATAGAATTTCTCGCCGCATTCTCAGATTTACCGATGGCTTCCTTTGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCTCAGGTTGCAAGGCTGCCACTCTTCTGAGCGCCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTTTCTCTCATTGTTCTGCAAGGTAATTTCCTCAAAAGCTTTCGATTTCGACGAAGTGTGCTCAATGTAAATTAACTATGAAATCTGTCTGAGTTGAGTTAACTGCGACGACTAAGGATCGAGAATAGGGCACTTGTGCCGATGTGGATCGGAAACGAATGCTGAATTGAGTTGAAAATAAGCTGAATGTTCTCGTTTGTGATCATTTATTTATTTAATTCTGTGAAGGGTTCCAGTTGAAATGAGCTTCTGTGTGGAGTCGATGCTTCCGTTCCATTCTGCTACTTCTTCTGCATTGATGACTTCGATGCTTTCTGTTTCTCGACATAGTTATGGCTGGCTTTCAGAAGGTACTTTCAGTCTCTTGTTCTTCTAGTAGTTTCTAGGAATCGGACCAAGTTATGAGCAATTATACTAGGATGAATTTTACTCTTTTCAATGTCTTGTTATGCTGTCAGTTTTTTCTTTGGTTCTGGTTTTTGTTGGCAAAAAATTAAATCTGCTGTGTTGGTTGAATAGCTTTATTAGTTACTTGGATTGGCTTTGTGATGTACAACACAGAGGAGGATAACATGTGATATACACAATAGATCCTTTAAATTTGGACCTTAGAATGTAGGATGAGAAATAGGATGGGAAAATAGTGGAGGGAGGGATATTTTATTTATTTATTTATTATTTTTATATATACAAGAAACACGAACTTCTCACTGATATTTGAGAAGTTATAGATGAAGATGAAGAGATGAGCTTTTATAATTCATTTCATCATAATTTTCACCAAGTGATTGAAAACAATAATAGGAAACTATCTAGAAAATAATTCTCCACTTGCTCATGTTAAACCATCAACAGTATTTTGGTATTTTGGGCAAATATATTTCCCCACTGCATCAGTAATCTAAAGTCTAAACGCTCTTTTGGCTTGATTGAGCAGATGTTTTTTGCTATCTTTTTCATATCAGTGAATCAAGAATCTGAGTTTATTGTCTTAAGATAAATATAAAATGCTGCATTCTGGATTGGGGTCTAACTTTTTCACCGCTAAAAAACACAAAATGGCTTTCATCCACATACTTGAAATTAAATGTGAAGATACTAATTGCTATGTTTAATCAGTGTTCAATGATGATGTGTGATGAATGGTCAAGGGGATTCGAGAGAAGATTTTTATGCAGAGTTCCACATTGTGACAGTGCCCGCTGCTAAATTAGATGAGCTGATGCACAGGGATTTGGTTTTCCATGTCTTGACTTTCAGTCAAGTTTGCATGTCTTGA ATGGCTTCCTTTGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCTCAGGTTGCAAGGCTGCCACTCTTCTGAGCGCCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTTTCTCTCATTGTTCTGCAAGGGTTCCAGTTGAAATGAGCTTCTGTGTGGAGTCGATGCTTCCGTTCCATTCTGCTACTTCTTCTGCATTGATGACTTCGATGCTTTCTGTTTCTCGACATAGTTATGGCTGGCTTTCAGAAGGGGATTCGAGAGAAGATTTTTATGCAGAGTTCCACATTGTGACAGTGCCCGCTGCTAAATTAGATGAGCTGATGCACAGGGATTTGGTTTTCCATGTCTTGACTTTCAGTCAAGTTTGCATGTCTTGA ATGGCTTCCTTTGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCTCAGGTTGCAAGGCTGCCACTCTTCTGAGCGCCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTTTCTCTCATTGTTCTGCAAGGGTTCCAGTTGAAATGAGCTTCTGTGTGGAGTCGATGCTTCCGTTCCATTCTGCTACTTCTTCTGCATTGATGACTTCGATGCTTTCTGTTTCTCGACATAGTTATGGCTGGCTTTCAGAAGGGGATTCGAGAGAAGATTTTTATGCAGAGTTCCACATTGTGACAGTGCCCGCTGCTAAATTAGATGAGCTGATGCACAGGGATTTGGTTTTCCATGTCTTGACTTTCAGTCAAGTTTGCATGTCTTGA MASFAARAIFRSSSGSGCKAATLLSAGARAAPARSPFRIASKRPFSHCSARVPVEMSFCVESMLPFHSATSSALMTSMLSVSRHSYGWLSEGDSREDFYAEFHIVTVPAAKLDELMHRDLVFHVLTFSQVCMS Homology
BLAST of Spg006179 vs. NCBI nr
Match: TYK15251.1 (protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa]) HSP 1 Score: 151.8 bits (382), Expect = 4.3e-33 Identity = 84/92 (91.30%), Postives = 86/92 (93.48%), Query Frame = 0
BLAST of Spg006179 vs. NCBI nr
Match: XP_038887457.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X3 [Benincasa hispida]) HSP 1 Score: 149.8 bits (377), Expect = 1.6e-32 Identity = 82/92 (89.13%), Postives = 84/92 (91.30%), Query Frame = 0
BLAST of Spg006179 vs. NCBI nr
Match: KAA0039497.1 (protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa]) HSP 1 Score: 149.4 bits (376), Expect = 2.1e-32 Identity = 83/91 (91.21%), Postives = 85/91 (93.41%), Query Frame = 0
BLAST of Spg006179 vs. NCBI nr
Match: XP_008459321.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucumis melo]) HSP 1 Score: 147.9 bits (372), Expect = 6.2e-32 Identity = 82/91 (90.11%), Postives = 84/91 (92.31%), Query Frame = 0
BLAST of Spg006179 vs. NCBI nr
Match: XP_008459322.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucumis melo]) HSP 1 Score: 147.9 bits (372), Expect = 6.2e-32 Identity = 82/91 (90.11%), Postives = 84/91 (92.31%), Query Frame = 0
BLAST of Spg006179 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10 Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = 0
BLAST of Spg006179 vs. ExPASy TrEMBL
Match: A0A5D3CTR8 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00250 PE=4 SV=1) HSP 1 Score: 151.8 bits (382), Expect = 2.1e-33 Identity = 84/92 (91.30%), Postives = 86/92 (93.48%), Query Frame = 0
BLAST of Spg006179 vs. ExPASy TrEMBL
Match: A0A5A7TDD1 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G003170 PE=4 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 1.0e-32 Identity = 83/91 (91.21%), Postives = 85/91 (93.41%), Query Frame = 0
BLAST of Spg006179 vs. ExPASy TrEMBL
Match: A0A1S3CB40 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498488 PE=4 SV=1) HSP 1 Score: 147.9 bits (372), Expect = 3.0e-32 Identity = 82/91 (90.11%), Postives = 84/91 (92.31%), Query Frame = 0
BLAST of Spg006179 vs. ExPASy TrEMBL
Match: A0A1S3C9E2 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498488 PE=4 SV=1) HSP 1 Score: 147.9 bits (372), Expect = 3.0e-32 Identity = 82/91 (90.11%), Postives = 84/91 (92.31%), Query Frame = 0
BLAST of Spg006179 vs. ExPASy TrEMBL
Match: A0A0A0KVK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636540 PE=4 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 4.3e-31 Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 0
BLAST of Spg006179 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 72.0 bits (175), Expect = 4.0e-13 Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 0
BLAST of Spg006179 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 72.0 bits (175), Expect = 4.0e-13 Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 0
BLAST of Spg006179 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 72.0 bits (175), Expect = 4.0e-13 Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 0
BLAST of Spg006179 vs. TAIR 10
Match: AT2G20585.2 (nuclear fusion defective 6 ) HSP 1 Score: 70.5 bits (171), Expect = 1.2e-12 Identity = 45/94 (47.87%), Postives = 64/94 (68.09%), Query Frame = 0
BLAST of Spg006179 vs. TAIR 10
Match: AT2G20585.3 (nuclear fusion defective 6 ) HSP 1 Score: 70.5 bits (171), Expect = 1.2e-12 Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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