Spg006145 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006145
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold4: 5329892 .. 5330660 (+)
RNA-Seq Expression	Spg006145
Synteny	Spg006145

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTAAAGGATTGCCTGGTATCATCAACAAAAACTGTGATACTGCGACTCCTTTTCAGAAAAAAAAAAATCAACAAAATATGTGACCTCTAAGCATGCAGGATTTCTCTTGAATGATTGATTACGTGTTACAACCTTGTTTTGTTAATGATATTTGCCCACACTTCATTATTGTTTAAATTATTGGTGGTAAGTTTTATTTTAAGCTGAGGTCTCGGCTCTTGCTTTTTTGACGTGTGGAAAAGGTGTGTCCAATGTTCATCTGGTCAGTTATCAGTGTTTTCTAGTTTTTAGTTTGTATGCAACAAGACTATCTTATAATCCGATACTAATAATGCTGAGTTAATCCGTTCACTGGAAATTTGATAGCGTACTTGGAGCAGTCCTTAAGCAATTTGTTGGTTTCTTTGCTAACAATTTCCTCCTTCCGTTTCTTTTTCAAGTCATCAAGTCCATAGTGTCACTATAACCATACTAAAGTGACTTTAACAGGCACAATATAACTCCATTTCCTGTTGAACATGTATTGGAAAAATGACTACAGAATGTTGTTCAAGAACTTTTGGCTGACAATGTGCAAAAGTCGGCGAGAGCTGAATCAGAACTCAAGGTGCTTCCCAAGCAACTATGGTGTTCCCTTAAAGAAAGTAAAGACAGTGGAGATACTTGCTGTGAAGTAGGATGGCTTTTTGATCAAGGGCATGCGATCACATCAAGATGCATCTTCTCAAGCGCAGCGAAATTGAAGGCAAGTTCTTTCAGTTAG

mRNA sequence

ATGAAATTAAAGGATTGCCTGAATGTTGTTCAAGAACTTTTGGCTGACAATGTGCAAAAGTCGGCGAGAGCTGAATCAGAACTCAAGGTGCTTCCCAAGCAACTATGGTGTTCCCTTAAAGAAAGTAAAGACAGTGGAGATACTTGCTGTGAAGTAGGATGGCTTTTTGATCAAGGGCATGCGATCACATCAAGATGCATCTTCTCAAGCGCAGCGAAATTGAAGGCAAGTTCTTTCAGTTAG

Coding sequence (CDS)

ATGAAATTAAAGGATTGCCTGAATGTTGTTCAAGAACTTTTGGCTGACAATGTGCAAAAGTCGGCGAGAGCTGAATCAGAACTCAAGGTGCTTCCCAAGCAACTATGGTGTTCCCTTAAAGAAAGTAAAGACAGTGGAGATACTTGCTGTGAAGTAGGATGGCTTTTTGATCAAGGGCATGCGATCACATCAAGATGCATCTTCTCAAGCGCAGCGAAATTGAAGGCAAGTTCTTTCAGTTAG

Protein sequence

MKLKDCLNVVQELLADNVQKSARAESELKVLPKQLWCSLKESKDSGDTCCEVGWLFDQGHAITSRCIFSSAAKLKASSFS

Homology

[Close]

BLAST of Spg006145 vs. NCBI nr
Match: XP_022969127.1 (uncharacterized protein LOC111468217 [Cucurbita maxima])

HSP 1 Score: 133.3 bits (334), Expect = 9.5e-28
Identity = 63/74 (85.14%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 7   LNVVQELLADNVQKSARAESELKVLPKQLWCSLKESKDSGDTCCEVGWLFDQGHAITSRC 66
           +NV+QELLADNVQKS R ESELKVLPKQLWCSLKES+DSGDTCCEVGWLFD GHAITSRC
Sbjct: 305 INVIQELLADNVQKSVRTESELKVLPKQLWCSLKESEDSGDTCCEVGWLFDHGHAITSRC 364

Query: 67  IFSSAAKLKASSFS 81
           IFSS+AKLK  S +
Sbjct: 365 IFSSSAKLKEISIA 378

[Close]

BLAST of Spg006145 vs. NCBI nr
Match: XP_023554509.1 (uncharacterized protein LOC111811725 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.5 bits (332), Expect = 1.6e-27
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 8   NVVQELLADNVQKSARAESELKVLPKQLWCSLKESKDSGDTCCEVGWLFDQGHAITSRCI 67
           NV+QELLADNVQKS R ESELKVLPKQLWCSLKES+DSGDTCCEVGWLFD GHAITSRCI
Sbjct: 306 NVIQELLADNVQKSVRTESELKVLPKQLWCSLKESEDSGDTCCEVGWLFDHGHAITSRCI 365

Query: 68  FSSAAKLKASSFS 81
           FSS+AKLK  S +
Sbjct: 366 FSSSAKLKEISIA 378

[Close]

BLAST of Spg006145 vs. NCBI nr
Match: KAG7022774.1 (hypothetical protein SDJN02_16510, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.7 bits (330), Expect = 2.8e-27
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 7   LNVVQELLADNVQKSARAESELKVLPKQLWCSLKESKDSGDTCCEVGWLFDQGHAITSRC 66
           +N+ QELLAD+VQKS R ES LK+LPKQLWCSLKESKDSGD CCEVGWLFD GHAITSRC
Sbjct: 313 INIAQELLADDVQKSTRTESNLKMLPKQLWCSLKESKDSGDACCEVGWLFDHGHAITSRC 372

Query: 67  IFSSAAKLKASS 79
           IFSSAAKLKASS
Sbjct: 373 IFSSAAKLKASS 384

[Close]

BLAST of Spg006145 vs. NCBI nr
Match: XP_022952169.1 (uncharacterized protein LOC111454926 [Cucurbita moschata])

HSP 1 Score: 130.2 bits (326), Expect = 8.0e-27
Identity = 62/74 (83.78%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 7   LNVVQELLADNVQKSARAESELKVLPKQLWCSLKESKDSGDTCCEVGWLFDQGHAITSRC 66
           +NV+QELLADNVQKS R ESELKVLPKQLWCSLKES+DS DTCCEVGWLFD GHAITSRC
Sbjct: 305 INVIQELLADNVQKSVRTESELKVLPKQLWCSLKESEDSEDTCCEVGWLFDHGHAITSRC 364

Query: 67  IFSSAAKLKASSFS 81
           IFSS+AKLK  S +
Sbjct: 365 IFSSSAKLKEISIA 378

[Close]

BLAST of Spg006145 vs. NCBI nr
Match: XP_022135982.1 (uncharacterized protein LOC111007798 isoform X1 [Momordica charantia])

HSP 1 Score: 128.6 bits (322), Expect = 2.3e-26
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 7   LNVVQELLADNVQKSARAESELKVLPKQLWCSLKESKDSGDTCCEVGWLFDQGHAITSRC 66
           +N VQELLADNVQ+S R ES+LKVLPKQLWCSL+ESK+SGDTCCEVGWLFDQGHAITSRC
Sbjct: 300 INAVQELLADNVQRSTRIESDLKVLPKQLWCSLRESKESGDTCCEVGWLFDQGHAITSRC 359

Query: 67  IFSSAAKLKASSFS 81
           IFSS A+LK  S +
Sbjct: 360 IFSSTARLKEISIA 373

[Close]

BLAST of Spg006145 vs. ExPASy TrEMBL
Match: A0A6J1HVH4 (uncharacterized protein LOC111468217 OS=Cucurbita maxima OX=3661 GN=LOC111468217 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.6e-28
Identity = 63/74 (85.14%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 7   LNVVQELLADNVQKSARAESELKVLPKQLWCSLKESKDSGDTCCEVGWLFDQGHAITSRC 66
           +NV+QELLADNVQKS R ESELKVLPKQLWCSLKES+DSGDTCCEVGWLFD GHAITSRC
Sbjct: 305 INVIQELLADNVQKSVRTESELKVLPKQLWCSLKESEDSGDTCCEVGWLFDHGHAITSRC 364

Query: 67  IFSSAAKLKASSFS 81
           IFSS+AKLK  S +
Sbjct: 365 IFSSSAKLKEISIA 378

[Close]

BLAST of Spg006145 vs. ExPASy TrEMBL
Match: A0A6J1GKV0 (uncharacterized protein LOC111454926 OS=Cucurbita moschata OX=3662 GN=LOC111454926 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.9e-27
Identity = 62/74 (83.78%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 7   LNVVQELLADNVQKSARAESELKVLPKQLWCSLKESKDSGDTCCEVGWLFDQGHAITSRC 66
           +NV+QELLADNVQKS R ESELKVLPKQLWCSLKES+DS DTCCEVGWLFD GHAITSRC
Sbjct: 305 INVIQELLADNVQKSVRTESELKVLPKQLWCSLKESEDSEDTCCEVGWLFDHGHAITSRC 364

Query: 67  IFSSAAKLKASSFS 81
           IFSS+AKLK  S +
Sbjct: 365 IFSSSAKLKEISIA 378

[Close]

BLAST of Spg006145 vs. ExPASy TrEMBL
Match: A0A6J1C4A4 (uncharacterized protein LOC111007798 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007798 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 7   LNVVQELLADNVQKSARAESELKVLPKQLWCSLKESKDSGDTCCEVGWLFDQGHAITSRC 66
           +N VQELLADNVQ+S R ES+LKVLPKQLWCSL+ESK+SGDTCCEVGWLFDQGHAITSRC
Sbjct: 300 INAVQELLADNVQRSTRIESDLKVLPKQLWCSLRESKESGDTCCEVGWLFDQGHAITSRC 359

Query: 67  IFSSAAKLKASSFS 81
           IFSS A+LK  S +
Sbjct: 360 IFSSTARLKEISIA 373

[Close]

BLAST of Spg006145 vs. ExPASy TrEMBL
Match: A0A5A7UZI9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00170 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-26
Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 7   LNVVQELLADNVQKSARAESELKVLPKQLWCSLKESKDSGDTCCEVGWLFDQGHAITSRC 66
           +NV+QELLADNVQKS R ESELK+LPKQLWCSLKESKDSGDT CEVGWLF  GHAITSRC
Sbjct: 301 INVIQELLADNVQKSVRTESELKLLPKQLWCSLKESKDSGDTYCEVGWLFAHGHAITSRC 360

Query: 67  IFSSAAKLKAS 78
           IFSS +KLKAS
Sbjct: 361 IFSSTSKLKAS 371

[Close]

BLAST of Spg006145 vs. ExPASy TrEMBL
Match: A0A6J1ER56 (uncharacterized protein LOC111435129 OS=Cucurbita moschata OX=3662 GN=LOC111435129 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.3e-26
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 8   NVVQELLADNVQKSARAESELKVLPKQLWCSLKESKDSGDTCCEVGWLFDQGHAITSRCI 67
           N+ QELLAD+VQKS R ES LK+LPKQLWCSLKESKDSGD CCEVGWLFD GHAITSRCI
Sbjct: 529 NIAQELLADDVQKSTRTESNLKMLPKQLWCSLKESKDSGDACCEVGWLFDHGHAITSRCI 588

Query: 68  FSSAAKLKASSFS 81
           FSSAAKLK  S +
Sbjct: 589 FSSAAKLKEISIA 601

[Close]

BLAST of Spg006145 vs. TAIR 10
Match: AT4G38225.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-12
Identity = 31/66 (46.97%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 10  VQELLADNVQKSARAESELKVLPKQLWCSLKESKDSGDTCCEVGWLFDQGHAITSRCIFS 69
           +Q++  + V +  R E++L +LP++LWCSL++ KD  +    VGW+F+ GHAITS C+FS
Sbjct: 286 IQQVTGEKVIEIVREENDLLLLPQELWCSLQQGKDR-ERVFSVGWVFEPGHAITSSCVFS 345

Query: 70  SAAKLK 76
           S +KLK
Sbjct: 346 SDSKLK 350

[Close]

BLAST of Spg006145 vs. TAIR 10
Match: AT4G38225.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-12
Identity = 31/66 (46.97%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 10  VQELLADNVQKSARAESELKVLPKQLWCSLKESKDSGDTCCEVGWLFDQGHAITSRCIFS 69
           +Q++  + V +  R E++L +LP++LWCSL++ KD  +    VGW+F+ GHAITS C+FS
Sbjct: 286 IQQVTGEKVIEIVREENDLLLLPQELWCSLQQGKDR-ERVFSVGWVFEPGHAITSSCVFS 345

Query: 70  SAAKLK 76
           S +KLK
Sbjct: 346 SDSKLK 350

The following BLAST results are available for this feature:

BLAST of Spg006145 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022969127.1	9.5e-28	85.14	uncharacterized protein LOC111468217 [Cucurbita maxima]	[more]
XP_023554509.1	1.6e-27	86.30	uncharacterized protein LOC111811725 [Cucurbita pepo subsp. pepo]	[more]
KAG7022774.1	2.8e-27	86.11	hypothetical protein SDJN02_16510, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022952169.1	8.0e-27	83.78	uncharacterized protein LOC111454926 [Cucurbita moschata]	[more]
XP_022135982.1	2.3e-26	81.08	uncharacterized protein LOC111007798 isoform X1 [Momordica charantia]	[more]

BLAST of Spg006145 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg006145 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HVH4	4.6e-28	85.14	uncharacterized protein LOC111468217 OS=Cucurbita maxima OX=3661 GN=LOC111468217...	[more]
A0A6J1GKV0	3.9e-27	83.78	uncharacterized protein LOC111454926 OS=Cucurbita moschata OX=3662 GN=LOC1114549...	[more]
A0A6J1C4A4	1.1e-26	81.08	uncharacterized protein LOC111007798 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A5A7UZI9	1.9e-26	85.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1ER56	4.3e-26	82.19	uncharacterized protein LOC111435129 OS=Cucurbita moschata OX=3662 GN=LOC1114351...	[more]

BLAST of Spg006145 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38225.3	1.2e-12	46.97	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G38225.1	1.2e-12	46.97	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR42936	GLYCEROL KINASE	coord: 6..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006145.1	Spg006145.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane