Spg006110 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006110
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Tripartite motif-containing protein 5
Location	scaffold4: 5287104 .. 5288828 (+)
RNA-Seq Expression	Spg006110
Synteny	Spg006110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCTTTCTCTCTCCTATCTCTCTCTCTCTCTTTCTCTCTCCTCCACTTTTTCTCTGTAAAAAACGCCATTCCTTCACCTTCTGCCATGGCTTCTTCATTTGTCGAAACCTAACCAGAAGCTTCGTGGAAGACAGTTGTGGAAGCTGAGTGAGATTCTCTGAGAGGTTGTTGTTGTTGGATTGAGAATTTTAGGGTTTCGAGTTGTAATTGGGCGGAATTGACGATGTCTCTGAGAATAAAGGCCGTGGTGGATAAATTCGTGGAGGAGCTCAAGGAAGCCTTGGATGCGGATATTCAAGATCGAATCATGAAGGAGAGAGAGATGCAGAGTTACATCGAAGAGCGCGAACGTGAGGTTGCTGAGCGCGAAGCTGCTTGGAAGGCGGAACTCTCCCGTCGCGAGGTACTTGATTGAGTTTTCCTTTCTTTCTCGTGGAATTAGTTTGTTTCTGTTTATCTTTTTGTTTGTTTGTTAGAAAACAGCTTAATTGAAGATTACTGGTGAGTTTTCATGGATATATGCTCGTTTCTATGTTCTAATTTTCTAACACCGAGCATAAAGTGTAAGAAAAGTATTCGGTCTCTGTTACTTATCTTATACGTGGTCGATGTAACGTGAATGCTACTGTAATATGGAAATGAAGACGTTTTCTACTGAATTTTATCATTTCATGATTGAGCCTTATTCATAGCTAAATTAATAGGGCAGAATTCTTGGTGGTACTGGTACTTTCGAAGTAATTTATAGATTAATCTCATTGTGGTACGGTTGTGAGGCTTTTCGATTCAGAAAGAAGTGTAAAATTGCTCATGTCCAGTAATTGAACATTGCACAATCTTTATTTCTTCCCCCGTTGTGTGGCTCTTACCTTTTAGGTTGCTTAAATGCTTGTTTTCTGGACTTCTCCTGTCATTACTGCACGAATTGTAGGATGTCCATTTCCCTTGTCTATTGTTTTCATATTTACCTCCAAATCTAGGAAGAAAAGGTAAGGAATGAGGGATGACCATTAAGTTCCCATGAGGATGTTTGGCCTATGGTTTCAAAGCGAGGTGTTTCTGAACCTGATGTCCGAGTTCGTGTTGGGTTTGACTTGAAATTAGTATGCAGTATATAAATTGTGGGTTTCCAGCAAACCTGTGGTCTGGGACAAGCAAATTCATACACCAAATATAGACTCGACTTTTTAGCTTCGGATTACATAATCTAACTAGTGAGCCAAGCGATCCTACTAGTTCTAATGGTGCAGCAGAGCATAGTAACTTCAGCTCTACCCATGCAAGACAAGTGAATTGGCTGCTTTCACATAGATTATCTTGCCCTCAAGTCAGGCATGTTAGTTGTAGAAGAACTGGAAGTTACCTGATATAGCGAATGCACTGAGTAGACAATAATTAGTGAAAGAACTATTCTAGTAAAGATGAGCTTGAATATTTCTCTTATTATTATATAAATTCATTATGTTTTCAACCCATTTTTCTGCATCAATTACTCTGACTTCATGCTTCCAGAAAGAAAGAGTCTTTTACTACTGGAAATAATGATGATGATGATGATGAAAGTAAAATCAATGATGGCTTCTCATCATGTGTTGATTCTTTTCTTTCCTCTCTCTCTCTTTTAGGCAGAGATTGCACGACAAGAAGCAAGGTTGAAGATGGAGAAGGAAAATCTGGAAAAAGAGAAAAGTGTGCTAATGGGAACTGCATCAAATCAAGATAA

mRNA sequence

ATGTCTCTGAGAATAAAGGCCGTGGTGGATAAATTCGTGGAGGAGCTCAAGGAAGCCTTGGATGCGGATATTCAAGATCGAATCATGAAGGAGAGAGAGATGCAGAGTTACATCGAAGAGCGCGAACGTGAGGTTGCTGAGCGCGAAGCTGCTTGGAAGGCGGAACTCTCCCGTCGCGAGGGCAGAATTCTTGGTGGTACTGGATGTCCATTTCCCTTGTCTATTGTTTTCATATTTACCTCCAAATCTAGGAAGAAAAGAAAGAAAGAGTCTTTTACTACTGGAAATAATGATGATGATGATGATGAAAGTAAAATCAATGATGGCTTCTCATCATGTGTTGATTCTTTTCTTTCCTCTCTCTCTCTTTTAGGCAGAGATTGCACGACAAGAAGCAAGGTTGAAGATGGAGAAGGAAAATCTGGAAAAAGAGAAAAGTGTGCTAATGGGAACTGCATCAAATCAAGATAA

Coding sequence (CDS)

ATGTCTCTGAGAATAAAGGCCGTGGTGGATAAATTCGTGGAGGAGCTCAAGGAAGCCTTGGATGCGGATATTCAAGATCGAATCATGAAGGAGAGAGAGATGCAGAGTTACATCGAAGAGCGCGAACGTGAGGTTGCTGAGCGCGAAGCTGCTTGGAAGGCGGAACTCTCCCGTCGCGAGGGCAGAATTCTTGGTGGTACTGGATGTCCATTTCCCTTGTCTATTGTTTTCATATTTACCTCCAAATCTAGGAAGAAAAGAAAGAAAGAGTCTTTTACTACTGGAAATAATGATGATGATGATGATGAAAGTAAAATCAATGATGGCTTCTCATCATGTGTTGATTCTTTTCTTTCCTCTCTCTCTCTTTTAGGCAGAGATTGCACGACAAGAAGCAAGGTTGAAGATGGAGAAGGAAAATCTGGAAAAAGAGAAAAGTGTGCTAATGGGAACTGCATCAAATCAAGATAA

Protein sequence

MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRREGRILGGTGCPFPLSIVFIFTSKSRKKRKKESFTTGNNDDDDDESKINDGFSSCVDSFLSSLSLLGRDCTTRSKVEDGEGKSGKREKCANGNCIKSR

Homology

[Close]

BLAST of Spg006110 vs. NCBI nr
Match: RVX20853.1 (hypothetical protein CK203_002652 [Vitis vinifera])

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-21
Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 1  MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60
          MSLRIKAVVDKFV+ELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE
Sbjct: 1  MSLRIKAVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61 GRILGG 67
          G +  G
Sbjct: 61 GSLCFG 66

[Close]

BLAST of Spg006110 vs. NCBI nr
Match: XP_042978810.1 (uncharacterized protein LOC122309396 isoform X3 [Carya illinoinensis])

HSP 1 Score: 111.7 bits (278), Expect = 5.8e-21
Identity = 73/141 (51.77%), Postives = 81/141 (57.45%), Query Frame = 0


Query: 1   MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60
           MSLRIK VVDKFV+ELKEALDADIQDRIMKEREMQSYI+EREREVAEREAAWK ELSRRE
Sbjct: 1   MSLRIKTVVDKFVQELKEALDADIQDRIMKEREMQSYIDEREREVAEREAAWKVELSRRE 60

Query: 61  GRILGGTGCPFPLSIVFIFTSKSRKKRKKESFTTGNNDDDDDESKINDGFSSCVDSFLSS 120
           G        P+ +S+  +  S                                       
Sbjct: 61  GTTWKHMS-PYAISLWLLARSPLP------------------------------------ 101

Query: 121 LSLLGRDCTTRSKVEDGEGKS 142
              LGRDC TRS+ +DGE KS
Sbjct: 121 ---LGRDCATRSEAQDGERKS 101

[Close]

BLAST of Spg006110 vs. NCBI nr
Match: KAD7116479.1 (hypothetical protein E3N88_03747 [Mikania micrantha])

HSP 1 Score: 111.3 bits (277), Expect = 7.5e-21
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60
          MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE
Sbjct: 1  MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61 GRI 64
            I
Sbjct: 61 AEI 63

[Close]

BLAST of Spg006110 vs. NCBI nr
Match: XP_010530976.1 (PREDICTED: uncharacterized protein LOC104807412 [Tarenaya hassleriana] >XP_022020807.1 uncharacterized protein LOC110920893 [Helianthus annuus] >KAF5818791.1 hypothetical protein HanXRQr2_Chr02g0070151 [Helianthus annuus])

HSP 1 Score: 111.3 bits (277), Expect = 7.5e-21
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60
          MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE
Sbjct: 1  MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61 GRI 64
            I
Sbjct: 61 AEI 63

[Close]

BLAST of Spg006110 vs. NCBI nr
Match: PSS08228.1 (Midasin like [Actinidia chinensis var. chinensis] >GFY94486.1 hypothetical protein Acr_09g0009320 [Actinidia rufa])

HSP 1 Score: 111.3 bits (277), Expect = 7.5e-21
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60
          MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE
Sbjct: 1  MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61 GRI 64
            I
Sbjct: 61 AEI 63

[Close]

BLAST of Spg006110 vs. ExPASy TrEMBL
Match: A0A438KI25 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_002652 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 1  MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60
          MSLRIKAVVDKFV+ELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE
Sbjct: 1  MSLRIKAVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61 GRILGG 67
          G +  G
Sbjct: 61 GSLCFG 66

[Close]

BLAST of Spg006110 vs. ExPASy TrEMBL
Match: A0A803QTG4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-21
Identity = 77/156 (49.36%), Postives = 82/156 (52.56%), Query Frame = 0


Query: 1   MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60
           MSLRIKAVVDKFV+ELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRR 
Sbjct: 1   MSLRIKAVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRR- 60

Query: 61  GRILGGTGCPFPLSIVFIFTSKSRKKRKKESFTTGNNDDDDDESKINDGFSSCVDSFLSS 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 90

Query: 121 LSLLGRDCTTRSKVEDGEGKSGKREKCANGNCIKSR 157
                RDC +RSK +DGE K  K EK  +GNCI+SR
Sbjct: 121 -----RDCASRSKTKDGERKPRKGEKRLDGNCIESR 90

[Close]

BLAST of Spg006110 vs. ExPASy TrEMBL
Match: B9RKZ1 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1566200 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.7e-21
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60
          MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE
Sbjct: 1  MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61 GRI 64
            I
Sbjct: 61 AEI 63

[Close]

BLAST of Spg006110 vs. ExPASy TrEMBL
Match: A0A5N6PSF2 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_03747 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.7e-21
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60
          MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE
Sbjct: 1  MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61 GRI 64
            I
Sbjct: 61 AEI 63

[Close]

BLAST of Spg006110 vs. ExPASy TrEMBL
Match: A0A7J0F7U1 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_09g0009320 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.7e-21
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60
          MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE
Sbjct: 1  MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61 GRI 64
            I
Sbjct: 61 AEI 63

[Close]

BLAST of Spg006110 vs. TAIR 10
Match: AT2G17350.1 (unknown protein; Has 119 Blast hits to 93 proteins in 40 species: Archae - 0; Bacteria - 3; Metazoa - 18; Fungi - 12; Plants - 44; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). )

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-23
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60
          MSLRIK VVDKFVEELK+ALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE
Sbjct: 1  MSLRIKLVVDKFVEELKQALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61 GRI 64
            I
Sbjct: 61 TEI 63

The following BLAST results are available for this feature:

BLAST of Spg006110 vs. NCBI nr


Match Name	E-value	Identity	Description
RVX20853.1	3.4e-21	92.42	hypothetical protein CK203_002652 [Vitis vinifera]	[more]
XP_042978810.1	5.8e-21	51.77	uncharacterized protein LOC122309396 isoform X3 [Carya illinoinensis]	[more]
KAD7116479.1	7.5e-21	96.83	hypothetical protein E3N88_03747 [Mikania micrantha]	[more]
XP_010530976.1	7.5e-21	96.83	PREDICTED: uncharacterized protein LOC104807412 [Tarenaya hassleriana] >XP_02202...	[more]
PSS08228.1	7.5e-21	96.83	Midasin like [Actinidia chinensis var. chinensis] >GFY94486.1 hypothetical prote...	[more]

BLAST of Spg006110 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg006110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438KI25	1.6e-21	92.42	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_002652 PE=4 SV=1	[more]
A0A803QTG4	2.1e-21	49.36	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
B9RKZ1	3.7e-21	96.83	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1566200 PE=4 SV=1	[more]
A0A5N6PSF2	3.7e-21	96.83	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_03747 PE=4 SV=1	[more]
A0A7J0F7U1	3.7e-21	96.83	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_09g0009320 PE=4 SV=1	[more]

BLAST of Spg006110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17350.1	1.0e-23	93.65	unknown protein; Has 119 Blast hits to 93 proteins in 40 species: Archae - 0; Ba...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..105
None	No IPR available	PANTHER	PTHR35715	OS08G0511800 PROTEIN	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006110.1	Spg006110.1	mRNA