Spg005997 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg005997
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiontranscriptional regulator TAC1-like
Locationscaffold11: 1733063 .. 1737017 (+)
RNA-Seq ExpressionSpg005997
SyntenySpg005997
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTCGATACTCTGAAGATGATTCCGACGACCCCCGCACGGTTGACATGGGTCGTCCCGCCAACTGCTGCAGAAGGCCATGATCGAGACGGAGACGGAGAAAATAATCCCTCTTTCACATTGGAAGAAACCCTAATTGGTGAAGTCCGACAGCTCCCACTTTTCGTAGAGAAACCCTCGAATATGGATCAAAAGTTGGAGATTCGTCAAGTTCCCACGTCGGATTTTGCTTCTGATCAGAAGATAGGATCGTCGTTTCAACGTGATTATGTTGTTTCCGAGCTGGATCTTGAGCTTAGATTAGGACCTGAGCCACAAAATTCAACTCCAACATCATCAGCTCCTACTGGTAGTACTAGACACTTCTTTTGAATTGTTGAAAGCCATAATCTATATATATATGGTTTTGAACATTGGATTTAACTCATTGATCTTTACAAATATATATATACACATATATATATATATATATATATATATATATATATATATTACATTCTTTGTTATATATATCATAACCCCTTCATTTTTCTTGAATAAAACACTCCAAATTTAAGCAAAATTATAGCAATTTTTTCTGTTAGTATGATTTATGGGACCCTTGTTGTTTAAAAGGATATGTGTCATGTGTGTTCATTGTTGGATGTTCTATCAATTGAAATTTATTCTTGTAAAAAGAAAAAAGTTTTCCATAATGTTGTATTTTGGTTCAATAATGTAATTAATGTCACAAATTTTTTTACAAATAACTGAACTTAGGGTTTTTGTTGGCTATAGACTTTTGGCAAAGGGAAAAATTAGGAAAATGAAAACTGAGAAAGAAAGGTAAAAATTAGGGTTTTGATAGGATTTTGGATAGATACATGGATTGTGTTTGGAAGTGGAAAGCTAGGGTTTTGTAATAACAATATCATATATAGAGTTCCAAAATTATCTTAGGCCAGGGTTGTTTTCTTTACGCAATAAAACTTTGATAATTTAGTTCATGTTTGATAACCATTTGATTTTTTTTGTTTTTTTTAAAAAAAAAATTCTTCCCATTTCCTTACAATAGTTTGTTTTTGTTAAGACTTGAGAATTTTTAGCCAAATTTCAATATTTATATATATATATATATATATATATTGAAAACTATATATATAAATATTGAAAACTACTTTTTCTTTTACTACAAAACTTGACTTAGTTTTTGAAAATATGAAAAAAAAATGTAACAAAGCAAAGAAACTTTATAAGTAGATCTCGATAATTATTTGGTTTTTGGTTTTTGAAAATTAAGTTTATAAACACTACTCCCACCTATAAGTTTTTTTGTTTTTTATTTACCTTCTTCCCATATTTTCAAAACCAAGCCAATTTTTTGAAAACTAGAAAAAGTAGGCCCCCGTTTGATAACCATTTGGTTTTCGGTTTTTCAAAATTATACTTGTTTTCTCTCAATTTTTTTTATCAGGAGACATTAGAGTTCTTAGCCAAATTTCAAAAACAAAAACAAGTTTTAAACTTTTTTTTTTTTTTTTGTTTTCAAAATTTGACTTGGTTTTTGGAATCAAGAGAAGGATGTAGATAGCAAACCAAAGAAATGTATAAGTGAAATGAGTGTTTATAAGCTTAAATTAGTTTTCAAAAACCAAAAACAGAAAACGAAATGGTTATCAAACGGGGTCGTAGTATTCAAAATCTTGTTTTTGTTTTCGAAATTTGGCTAGGAATTTAAATGTGTCCTTAACAAAGATGAAACCATCATAAGAAATTGAGTAGAAAACAAGCATAATTTTTCAAAAACTAGACGGTTATAAAAAAGGACTAAAAGAGGTTTTTTTTTTTTTTTACCACATGTAGGGGTAGGAAATTGAACATCTAACCAAGCAAAGGAACCATCTTGGATTAAGAAAGATTATAATTTTTTGTTTTTTGTTTAAAAAACATTATCAATCCACCATTCCTTTGTGTTTTTTTCTTCTAATTTTTAGAAAATGTTGTTTTAAATTAATAACCACATTTTTTATTTAAAAAATAATTGTAACTTTCTTCAGTTTTTAAATTTTAACTAGAATTTTTTTTAAATTATAAATATTACCAAGAACAAAAAAATTGTGAATAACCAAGCTTAGTGTTCTTAAAAGATATTCAGTAAACTAAAAATGATTTGATTACCAAATGGATCTTAAAGTTCTTTACTCTCATAATAATTTAATTAACATGGTATATAATGTCTTAAACTTAAATTTTATAATCTTATTTTCTTGAGTATTTTATATAATTATTATCATTTTTGGTCTAATTATTTTTTGCTAGTTACTAATTTCTCCTTCTCCTAATCTGCTATCTTTCATATCAAATAGATTCTTCCAATAAAAGATTATCTCTTCCCCATTTCTGTTTACACCTCTTTAAAAAATAATAAATAAATAATCTCTTCCAAAATCTTCCTCAATTAGAATAGAAAAATACATGAAAAAATGTTGAGAGAAATATATATATATATATATATATATATATATATGAGTGTTCGAGTCATCTTATGCATACCACATGATACAACCGCTTGATTCTACAACATTTGGTTATCAGAAAATTCACAAGTTCGAACATCTTAGATCAATATTTACCAAAAAATTGAACTCATTCGCTTAAAATCTCTTTACATTTTTTTACATCAATGTGGTATGGAAAATTTTTCAAGATGTAAAGCTTATGAATTACATTTTTGCTATTCTTCTAATACTTGTAATTGCTCTCTACTACATATATTGTCCAAGTCTGACTGGGAAAGCACTACGAAGTTCGATCCGAGTTTAATAATCGACTCGAGTCTAGTAGTAAGTTCTAGGAAATAATTTTCTAAAAATAGATTTTTTACTTTTTATAATAAATATAGAATTCATCACCACTCTTATAGACACCCATATACTAAATTTTATAGATTTATAAACATACCTCAATTCATATTTTAGGTATTGCAATTCTTTTTGTAGTCCCCTCAATTTTATTTAATAATAACATTCTTAGCATTTGTTTAGTATGTAAATCATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTTTTTTTGAGTTCAACATACTCTTTGTATTTTAAAATTGGGTTCAACGCCACTTATGTAATTTGTGAAATATTCTAAAAATTATATCATTCTCTTAAATTTTATTATCAATTATAATGAAATTGTTGATAGAGGCCTTGTCCTACATGTATCCATTTCATTAAAATTATATGATTGGTTTTTTTGTTGTGACAACATGTAAGGAAGGATGGAGGACTCGAACCACAAACTTTTTTATCATTAGTACAAGTTTTATGTCATTGAACTATGCTCATGTTGACAAAATTATATAATTGTTAACAAATCGGCAAAATTATATAATTGTTAACAAATCAGACGATGTTTGTGTGATTATTTCTCATATACACAATCATAAACAAATCCACTCATGTTCTTTCCCAACTTCAACTTGACAATCAATGTCAAACTTATTCCAATAGTTTTAATGATTACTTGATTAAATCCACAAACCAATTAATATCATTTGTTTCATACAATGAGATATACTTTAATAAAGTGAACATAACTCAGCGATAATTGACATGTACTCTCGATCGAAAAATCAAAGATTCAAATCTCCTCATTTCCAATATTATAGAACTCAAAAAAATTCTTATACCTTGTGTAATTTCTAAAATCTATTAGAAGATCCATGGAGTAAAACATTCAATAAATATACTCAAATGCCATGAAGGATTCATTAGCAAAATAAAGGGAACTTGATCCCTGCAATGTGGATCATCTTACCTGTTCAAGGTATGCCTGCCCTTCTAAAAGAAATCCAAAACAATCTCAAGAAAGCCAATGAGACCATTGTGCTTTCATCAGATGAAACTTTCCTCATTCATTCAATTATAGCAAGATCTGTGTAG

mRNA sequence

ATGGTTGTCGATACTCTGAAGATGATTCCGACGACCCCCGCACGGTTGACATGGGTCGTCCCGCCAACTGCTGCAGAAGGCCATGATCGAGACGGAGACGGAGAAAATAATCCCTCTTTCACATTGGAAGAAACCCTAATTGGTGAAGTCCGACAGCTCCCACTTTTCGTAGAGAAACCCTCGAATATGGATCAAAAGTTGGAGATTCGTCAAGTTCCCACGTCGGATTTTGCTTCTGATCAGAAGATAGGATCGTCGTTTCAACGTGATTATGTTCACTACGAAGTTCGATCCGAGTTTAATAATCGACTCGAGTCTAGTAGTATGCCTGCCCTTCTAAAAGAAATCCAAAACAATCTCAAGAAAGCCAATGAGACCATTGTGCTTTCATCAGATGAAACTTTCCTCATTCATTCAATTATAGCAAGATCTGTGTAG

Coding sequence (CDS)

ATGGTTGTCGATACTCTGAAGATGATTCCGACGACCCCCGCACGGTTGACATGGGTCGTCCCGCCAACTGCTGCAGAAGGCCATGATCGAGACGGAGACGGAGAAAATAATCCCTCTTTCACATTGGAAGAAACCCTAATTGGTGAAGTCCGACAGCTCCCACTTTTCGTAGAGAAACCCTCGAATATGGATCAAAAGTTGGAGATTCGTCAAGTTCCCACGTCGGATTTTGCTTCTGATCAGAAGATAGGATCGTCGTTTCAACGTGATTATGTTCACTACGAAGTTCGATCCGAGTTTAATAATCGACTCGAGTCTAGTAGTATGCCTGCCCTTCTAAAAGAAATCCAAAACAATCTCAAGAAAGCCAATGAGACCATTGTGCTTTCATCAGATGAAACTTTCCTCATTCATTCAATTATAGCAAGATCTGTGTAG

Protein sequence

MVVDTLKMIPTTPARLTWVVPPTAAEGHDRDGDGENNPSFTLEETLIGEVRQLPLFVEKPSNMDQKLEIRQVPTSDFASDQKIGSSFQRDYVHYEVRSEFNNRLESSSMPALLKEIQNNLKKANETIVLSSDETFLIHSIIARSV
Homology
[Close]
BLAST of Spg005997 vs. NCBI nr
Match: XP_038895788.1 (transcriptional regulator TAC1-like [Benincasa hispida])

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-13
Identity = 52/90 (57.78%), Postives = 61/90 (67.78%), Query Frame = 0 

Query: 1   MVVDTLKMIP-TTPARLTWVVPPTAAEGHDRDGDGENNPSFTLEETLIG-EVRQLPLFVE 60
           MVVD  KMIP TTP +L WVV P+ +EGH R G G        EETLI  EV+QLPLFV+
Sbjct: 72  MVVDIPKMIPRTTPPQLPWVVSPSMSEGHRRSGGGR-------EETLISEEVQQLPLFVK 131

Query: 61  KPSNMDQKLEIRQVPTSDFASDQKIGSSFQ 89
             SNMDQ L+I QV   + ASD K+GSSF+
Sbjct: 132 NTSNMDQNLKIHQVLPIEVASDPKLGSSFR 154

[Close]
BLAST of Spg005997 vs. NCBI nr
Match: XP_022141797.1 (transcriptional regulator TAC1-like [Momordica charantia])

HSP 1 Score: 75.1 bits (183), Expect = 5.6e-10
Identity = 47/91 (51.65%), Postives = 57/91 (62.64%), Query Frame = 0 

Query: 1   MVVDTLKMIPTTPARLTWVVPPTAAEGHDRDGD-GE--NNPSFTLEETLIGEVRQLPLFV 60
           M VD +  I +TPARL WV+P T  EG  R  D GE     S T+EETL G+V+QL LF 
Sbjct: 73  MPVDDISKIISTPARLPWVIPSTTTEGRGRGEDRGEIGEITSSTMEETLKGKVQQLQLF- 132

Query: 61  EKPSNMDQKLEIRQVPTSDFASDQKIGSSFQ 89
           EK SNMDQK  + QV   + +SDQK+   FQ
Sbjct: 133 EKSSNMDQKFRVHQVLPLEASSDQKMVPPFQ 162

[Close]
BLAST of Spg005997 vs. NCBI nr
Match: XP_004145329.1 (transcriptional regulator TAC1 [Cucumis sativus] >KGN65749.1 hypothetical protein Csa_019602 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-08
Identity = 56/119 (47.06%), Postives = 65/119 (54.62%), Query Frame = 0 

Query: 1   MVVDTLKMIPTTPARLTWVV-PPTAAEGHDRDGDGENNPSFTLEETLIG-EVRQLPLFVE 60
           MVVDT KM+ +TP RL WVV  P+  + H R   G       LEETLI  E +QLPLFVE
Sbjct: 73  MVVDTPKMM-STPTRLPWVVISPSTRKEHGRSKGG-------LEETLISEEFQQLPLFVE 132

Query: 61  -KPSNMDQKLEIRQVPTSDFASDQKI------GSSFQRDYVHYEVRSEFNNRLESSSMP 111
             PSNMDQ LEIRQV   D   D K+      GSS     +   +  E  N   SSS+P
Sbjct: 133 NNPSNMDQNLEIRQVLPIDVDCDSKLGSPSRHGSSVSELDLELRLGPEPQNSTSSSSLP 183

[Close]
BLAST of Spg005997 vs. NCBI nr
Match: XP_008457447.1 (PREDICTED: transcriptional regulator TAC1-like [Cucumis melo] >KAA0067767.1 transcriptional regulator TAC1-like [Cucumis melo var. makuwa] >TYJ97379.1 transcriptional regulator TAC1-like [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 7.5e-07
Identity = 46/88 (52.27%), Postives = 53/88 (60.23%), Query Frame = 0 

Query: 1   MVVDTLKMIPTTPARLTWVV-PPTAAEGHDRDGDGENNPSFTLEETLIG-EVRQLPLFVE 60
           MVVDT KM+ +TP R  WVV  P+  E H R           LEETLI  E +QLPLFVE
Sbjct: 72  MVVDTPKMM-STPTRFPWVVISPSTREEHGRSN------RCGLEETLISEEFQQLPLFVE 131

Query: 61  -KPSNMDQKLEIRQVPTSDFASDQKIGS 86
             PSN+DQ LEIRQV   +   D K+GS
Sbjct: 132 NNPSNIDQNLEIRQVLPIEVDCDSKLGS 152

[Close]
BLAST of Spg005997 vs. ExPASy TrEMBL
Match: A0A6J1CKV7 (transcriptional regulator TAC1-like OS=Momordica charantia OX=3673 GN=LOC111012082 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.7e-10
Identity = 47/91 (51.65%), Postives = 57/91 (62.64%), Query Frame = 0 

Query: 1   MVVDTLKMIPTTPARLTWVVPPTAAEGHDRDGD-GE--NNPSFTLEETLIGEVRQLPLFV 60
           M VD +  I +TPARL WV+P T  EG  R  D GE     S T+EETL G+V+QL LF 
Sbjct: 73  MPVDDISKIISTPARLPWVIPSTTTEGRGRGEDRGEIGEITSSTMEETLKGKVQQLQLF- 132

Query: 61  EKPSNMDQKLEIRQVPTSDFASDQKIGSSFQ 89
           EK SNMDQK  + QV   + +SDQK+   FQ
Sbjct: 133 EKSSNMDQKFRVHQVLPLEASSDQKMVPPFQ 162

[Close]
BLAST of Spg005997 vs. ExPASy TrEMBL
Match: A0A0A0LXG2 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G524710 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.7e-09
Identity = 56/119 (47.06%), Postives = 65/119 (54.62%), Query Frame = 0 

Query: 1   MVVDTLKMIPTTPARLTWVV-PPTAAEGHDRDGDGENNPSFTLEETLIG-EVRQLPLFVE 60
           MVVDT KM+ +TP RL WVV  P+  + H R   G       LEETLI  E +QLPLFVE
Sbjct: 73  MVVDTPKMM-STPTRLPWVVISPSTRKEHGRSKGG-------LEETLISEEFQQLPLFVE 132

Query: 61  -KPSNMDQKLEIRQVPTSDFASDQKI------GSSFQRDYVHYEVRSEFNNRLESSSMP 111
             PSNMDQ LEIRQV   D   D K+      GSS     +   +  E  N   SSS+P
Sbjct: 133 NNPSNMDQNLEIRQVLPIDVDCDSKLGSPSRHGSSVSELDLELRLGPEPQNSTSSSSLP 183

[Close]
BLAST of Spg005997 vs. ExPASy TrEMBL
Match: A0A5A7VKP9 (Transcriptional regulator TAC1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001930 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.6e-07
Identity = 46/88 (52.27%), Postives = 53/88 (60.23%), Query Frame = 0 

Query: 1   MVVDTLKMIPTTPARLTWVV-PPTAAEGHDRDGDGENNPSFTLEETLIG-EVRQLPLFVE 60
           MVVDT KM+ +TP R  WVV  P+  E H R           LEETLI  E +QLPLFVE
Sbjct: 72  MVVDTPKMM-STPTRFPWVVISPSTREEHGRSN------RCGLEETLISEEFQQLPLFVE 131

Query: 61  -KPSNMDQKLEIRQVPTSDFASDQKIGS 86
             PSN+DQ LEIRQV   +   D K+GS
Sbjct: 132 NNPSNIDQNLEIRQVLPIEVDCDSKLGS 152

[Close]
BLAST of Spg005997 vs. ExPASy TrEMBL
Match: A0A1S3C679 (transcriptional regulator TAC1-like OS=Cucumis melo OX=3656 GN=LOC103497134 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.6e-07
Identity = 46/88 (52.27%), Postives = 53/88 (60.23%), Query Frame = 0 

Query: 1   MVVDTLKMIPTTPARLTWVV-PPTAAEGHDRDGDGENNPSFTLEETLIG-EVRQLPLFVE 60
           MVVDT KM+ +TP R  WVV  P+  E H R           LEETLI  E +QLPLFVE
Sbjct: 72  MVVDTPKMM-STPTRFPWVVISPSTREEHGRSN------RCGLEETLISEEFQQLPLFVE 131

Query: 61  -KPSNMDQKLEIRQVPTSDFASDQKIGS 86
             PSN+DQ LEIRQV   +   D K+GS
Sbjct: 132 NNPSNIDQNLEIRQVLPIEVDCDSKLGS 152

The following BLAST results are available for this feature:
BLAST of Spg005997 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038895788.12.4e-1357.78transcriptional regulator TAC1-like [Benincasa hispida][more]
XP_022141797.15.6e-1051.65transcriptional regulator TAC1-like [Momordica charantia][more]
XP_004145329.11.8e-0847.06transcriptional regulator TAC1 [Cucumis sativus] >KGN65749.1 hypothetical protei... [more]
XP_008457447.17.5e-0752.27PREDICTED: transcriptional regulator TAC1-like [Cucumis melo] >KAA0067767.1 tran... [more]
BLAST of Spg005997 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg005997 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CKV72.7e-1051.65transcriptional regulator TAC1-like OS=Momordica charantia OX=3673 GN=LOC1110120... [more]
A0A0A0LXG28.7e-0947.06C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G524710 P... [more]
A0A5A7VKP93.6e-0752.27Transcriptional regulator TAC1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A1S3C6793.6e-0752.27transcriptional regulator TAC1-like OS=Cucumis melo OX=3656 GN=LOC103497134 PE=4... [more]
BLAST of Spg005997 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 113..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg005997.1Spg005997.1mRNA