Spg005956 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005956
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	CCT domain-containing protein
Location	scaffold11: 2882840 .. 2885165 (-)
RNA-Seq Expression	Spg005956
Synteny	Spg005956

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAATCTCCCATCTCTTCCTTTCATTCACAAACCTTAAAAAAAAAGCATTCAAACTCTCCCTCTCCTCCCTCCTCCGCCACCTCATCATGCACAGCCACTTCGCCGCCACGGCCGACGCCTCTCTCTGCCACCTCCACTCCCCCGACCTCGCGGTGTCACCACCGCCTTTCTCATCGTTCCCTAATCTCATATCTTCCCACTCTTCCTCTTCCTCCTCCTCTTCCTCGCTTCTGGCATATAGCCAGCTCCTCGGGAGCGAGTTAGACCCGATGCTAGAGTCACCGGGGTTTCTACACTCGGAGGTTAGTTATAGTGGCAGTAGTGGACCATGTAGTAGCTACGGTTCTCCGACGTCGCAGCCCGGCTTGATAGAGCGGAGCATGAGCAGCCACTCGCTCCGAAAAAATGGGCTGAGCCATGGACCGAGCACTCGAGTTTCCGCGTTGTTCGACGCGGAGGGTCCGGTGAGAAGGGTCTACAGCTCCGGGGATTTGCCGGTGAGTTTTGCTCTCCAAAACTCTAAAAAAAAATTAATTCTTTCACTTGAAACTTTTAGCACTTAATTTTAACTCTATAACTCTTTTGAGAAACTATTAATTAAAAAAAAAAATACCATTTTTGTCAGTGTCGTTTTTTGTTTCTCAAAAGTCATTTTCAACTTAGGTCGGAAACCTTCATATGTTACAAACATAGTCAAACAGCAATTATTTGTCCCACATTTAATAAATAATAATGTTATAATATGGGCAAATGGTCCAATAGTAGCTAATACATTGTGAAATATATTTATTTATTTTATATCATTAAGTAAAAAATTGGTTAAATTTCTTAATATGAAATATTAACCAAAATTAGAAGTATAAATTTTGTTTACTGTGAATTAAAAACAAAGATTATATTGTTGATTATAAATTTATAATCAGGGAAGAGCAGAAAGGGCATGCTCGAGTGAAAGCAGCTTGATAATTGAAGGAATGACCAAAGCTTGTCGGTATAGCCCCGAAGAGAAGAGAGAAAGAATTGAGAAATACAAAATCAAGAGAAACCAGAGGAATTTTAATAAGAAAATTAAGGTAATTATTTTTTTTTTCTCATTGTAAACGTCGTAAATATAATTGAGATTATTATCATCGTAACATTGCACGATATAATTATCGTGTGATGAAAATGAATACGTAGCGGAAAAACTTAAAAATAAAATGATTATCTCACGGGTTTGAACATCAAATTTCACTTGAGTTTAAAATATGTTGGCAAATAATTAGTGTTTTTTTTTTTAATTTTCTACATGAATATGATTTAGAGGGAGAAGAAATGATGACAAGATGCATCTAAAATAATTGTGTCATGTTGGAAGTTAAACACAAAGTGGAGTAAAAATGATTGTGGATAGGGTTGCTATTCATATGTAGCTAGCAGCAGTGATGTGTTATTTTTCTACTCCAATGACATTTTTTATTTTTGGGATTTTCTTAAATTAAAATACTTTGCAATTTTATTTATATTTCATAATCTCTTTACTCAATAAACTTGTGCTCTAAAAGTGACAATTTTAGGTAACATAACATGGGAAAATATTGAAGAATTAAAGCTTCTCTACTTGTTTTCTCCCAAATTTTTCACAAGGGTTTTTATAAAACTACTTTTTTTTTTTTTTTTTTAACTTGAGTTTTTGAAAACTTTAAAAGAAAGTATTTTTTTTAAAAAAAAAAATTATTAGAAGTAGAAGTAGGGTTTATAAACTTAAATTTTCAAAAACCAAAAACAAAAAACTGAATGCTTATCAAATAGACCTAATTAAGTAAATGAGAAAGTTCTACATTTGATATATAAATTTAGGTTAAATCACAAATTTGGTCAATAAACTTTCATAGTTATGCCTATTTAATATTTGAACTTTAAAACATATCATTACATCCTTAAACTTTTAATTTCAATTCTAATAAGTCATTTGTCATTAAAACTATTACTCAATGTTGGTGACATGTTGAAAAACACACGACGAATAATATAGTATATGATGTGACATAAGAAAACAGGTTAATAAAAAAAAAATTAACTACACGTACTCTATCTGTTTGCTCGTTATTTTATAGACAACGTAACAAATCATCACTGGTTAGTCTAATCACGACGGAGGAATTTGGCAGTATGAATGCAGGAAGACATTGGCAGACAGCAGAAAGCGAGTAAGAGGGAGATTTGCGAGAAATGAAGAAACAGAGAGCAGCTGCTATGACAATGCCATGGTGGACGAAGAAGCCCAAGACGATGGCTCTTGGATCACCTTTCTTGACTCCTATTCTGTTAATTTTATTCCTTGA

mRNA sequence

ATGCACAGCCACTTCGCCGCCACGGCCGACGCCTCTCTCTGCCACCTCCACTCCCCCGACCTCGCGGTGTCACCACCGCCTTTCTCATCGTTCCCTAATCTCATATCTTCCCACTCTTCCTCTTCCTCCTCCTCTTCCTCGCTTCTGGCATATAGCCAGCTCCTCGGGAGCGAGTTAGACCCGATGCTAGAGTCACCGGGGTTTCTACACTCGGAGGTTAGTTATAGTGGCAGTAGTGGACCATGTAGTAGCTACGGTTCTCCGACGTCGCAGCCCGGCTTGATAGAGCGGAGCATGAGCAGCCACTCGCTCCGAAAAAATGGGCTGAGCCATGGACCGAGCACTCGAGTTTCCGCGTTGTTCGACGCGGAGGGTCCGGTGAGAAGGGTCTACAGCTCCGGGGATTTGCCGGGAAGAGCAGAAAGGGCATGCTCGAGTGAAAGCAGCTTGATAATTGAAGGAATGACCAAAGCTTGTCGGTATAGCCCCGAAGAGAAGAGAGAAAGAATTGAGAAATACAAAATCAAGAGAAACCAGAGGAATTTTAATAAGAAAATTAAGTCTAATCACGACGGAGGAATTTGGCAGTATGAATGCAGGAAGACATTGGCAGACAGCAGAAAGCGAGTAAGAGGGAGATTTGCGAGAAATGAAGAAACAGAGAGCAGCTGCTATGACAATGCCATGGTGGACGAAGAAGCCCAAGACGATGGCTCTTGGATCACCTTTCTTGACTCCTATTCTGTTAATTTTATTCCTTGA

Coding sequence (CDS)

ATGCACAGCCACTTCGCCGCCACGGCCGACGCCTCTCTCTGCCACCTCCACTCCCCCGACCTCGCGGTGTCACCACCGCCTTTCTCATCGTTCCCTAATCTCATATCTTCCCACTCTTCCTCTTCCTCCTCCTCTTCCTCGCTTCTGGCATATAGCCAGCTCCTCGGGAGCGAGTTAGACCCGATGCTAGAGTCACCGGGGTTTCTACACTCGGAGGTTAGTTATAGTGGCAGTAGTGGACCATGTAGTAGCTACGGTTCTCCGACGTCGCAGCCCGGCTTGATAGAGCGGAGCATGAGCAGCCACTCGCTCCGAAAAAATGGGCTGAGCCATGGACCGAGCACTCGAGTTTCCGCGTTGTTCGACGCGGAGGGTCCGGTGAGAAGGGTCTACAGCTCCGGGGATTTGCCGGGAAGAGCAGAAAGGGCATGCTCGAGTGAAAGCAGCTTGATAATTGAAGGAATGACCAAAGCTTGTCGGTATAGCCCCGAAGAGAAGAGAGAAAGAATTGAGAAATACAAAATCAAGAGAAACCAGAGGAATTTTAATAAGAAAATTAAGTCTAATCACGACGGAGGAATTTGGCAGTATGAATGCAGGAAGACATTGGCAGACAGCAGAAAGCGAGTAAGAGGGAGATTTGCGAGAAATGAAGAAACAGAGAGCAGCTGCTATGACAATGCCATGGTGGACGAAGAAGCCCAAGACGATGGCTCTTGGATCACCTTTCTTGACTCCTATTCTGTTAATTTTATTCCTTGA

Protein sequence

MHSHFAATADASLCHLHSPDLAVSPPPFSSFPNLISSHSSSSSSSSSLLAYSQLLGSELDPMLESPGFLHSEVSYSGSSGPCSSYGSPTSQPGLIERSMSSHSLRKNGLSHGPSTRVSALFDAEGPVRRVYSSGDLPGRAERACSSESSLIIEGMTKACRYSPEEKRERIEKYKIKRNQRNFNKKIKSNHDGGIWQYECRKTLADSRKRVRGRFARNEETESSCYDNAMVDEEAQDDGSWITFLDSYSVNFIP

Homology

[Close]

BLAST of Spg005956 vs. NCBI nr
Match: XP_038895146.1 (zinc finger protein CONSTANS-LIKE 5-like [Benincasa hispida])

HSP 1 Score: 336.7 bits (862), Expect = 1.8e-88
Identity = 192/255 (75.29%), Postives = 204/255 (80.00%), Query Frame = 0


Query: 8   TADASLCHLHSPDLAVSPPPFSSFPNLISSHSSSSSSSSSLLAYSQLLGSELDPMLESPG 67
           TADASLCHLHSPD AVSPP F SFPN  SSH   +SSSS L  YSQL  SELD +LES G
Sbjct: 12  TADASLCHLHSPDHAVSPPLFPSFPNFFSSH---TSSSSLLPTYSQL--SELDLVLESSG 71

Query: 68  FLHSEVSYSGSSGPCSSYGSPTSQPGLIERSMSSHSLRKNGLSHGPSTRVSALFDAEGP- 127
           FL SEVSYSGSSGPCSSYGSPTSQP LI RSMSSHSL+KN +SHGP  R S+LFDA+GP 
Sbjct: 72  FLPSEVSYSGSSGPCSSYGSPTSQPALIHRSMSSHSLQKNRVSHGPGARSSSLFDADGPA 131

Query: 128 VRRVYSSGDLPGRAERACSSESSLIIEGMTKACRYSPEEKRERIEKYKIKRNQRNFNKKI 187
           VRRVYSSGDL GR ER CSSESSLIIE MTKACRYSPEEKRERIE+YK KRNQRNFNKKI
Sbjct: 132 VRRVYSSGDLQGRTERGCSSESSLIIERMTKACRYSPEEKRERIERYKTKRNQRNFNKKI 191

Query: 188 KSNHDGGIWQYECRKTLADSRKRVRGRFARNEETES-----------SCYDNAMVDEEAQ 247
           K         YECRKTLADSR+R+RGRFARNEETE+           S YDNAMV+E+ Q
Sbjct: 192 K---------YECRKTLADSRRRIRGRFARNEETENSNSTSSPVETWSYYDNAMVEEDTQ 251

Query: 248 DDGSWITFLDSYSVN 251
           DDGSWITFL SYSVN
Sbjct: 252 DDGSWITFLGSYSVN 252

[Close]

BLAST of Spg005956 vs. NCBI nr
Match: XP_011657991.1 (two-component response regulator-like APRR9 isoform X1 [Cucumis sativus] >KGN65685.1 hypothetical protein Csa_020089 [Cucumis sativus])

HSP 1 Score: 301.6 bits (771), Expect = 6.4e-78
Identity = 180/262 (68.70%), Postives = 198/262 (75.57%), Query Frame = 0


Query: 1   MHSHFAATADASLCHLHSPDLAVSPPPFSSFPNLISSHSSSSSSSSSLLAYSQLLGSELD 60
           MHS F+   D S+ HLHSPDL VSPP F SFPN  SSH     SSS LLAYSQL    L+
Sbjct: 1   MHS-FSPAVDTSIFHLHSPDLIVSPPLFPSFPNFSSSH-----SSSFLLAYSQL---ALN 60

Query: 61  PMLESPGFLHSEV-SYSGSSGPCSSYGSPT-SQPGLIERSMSSHSLRKNGLSHGPSTRVS 120
           P+LESP  L SEV SYSGSSGPCSSYGSPT SQP LI+RSMSS SL+K+ + HGP  R+S
Sbjct: 61  PVLESPELLPSEVISYSGSSGPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARIS 120

Query: 121 ALFDAEGP-VRRVYSSGDLPGRAERACSSESSLIIEGMTKACRYSPEEKRERIEKYKIKR 180
           +L D + P VRRVYSSGDL GR ER CSSESSLIIEGMTKACRYSPEEKRERIE+YK KR
Sbjct: 121 SLIDTDMPAVRRVYSSGDLQGRTERGCSSESSLIIEGMTKACRYSPEEKRERIERYKTKR 180

Query: 181 NQRNFNKKIKSNHDGGIWQYECRKTLADSRKRVRGRFARNEETES-----------SCYD 240
           NQRNFNKKIK         YECRKTLADSR+R+RGRFARNEE E+           SCY+
Sbjct: 181 NQRNFNKKIK---------YECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYE 240

Query: 241 NAMVDEE-AQDDGSWITFLDSY 248
           N MV+E+  QDDGSWITFLDSY
Sbjct: 241 NPMVEEDTVQDDGSWITFLDSY 244

[Close]

BLAST of Spg005956 vs. NCBI nr
Match: XP_008457517.1 (PREDICTED: zinc finger protein CONSTANS-LIKE 3-like [Cucumis melo])

HSP 1 Score: 293.9 bits (751), Expect = 1.3e-75
Identity = 180/265 (67.92%), Postives = 195/265 (73.58%), Query Frame = 0


Query: 1   MHSHFAATADASLCHLHSPDLAV--SPPPFSSFPNLISSHSSSSSSSSSLLAYSQLLGSE 60
           MHS F+   D S+ HLHSPDL V  SPP F SFPN  SSH     SSS LLAYSQL    
Sbjct: 1   MHS-FSPAVDTSIFHLHSPDLIVSSSPPLFPSFPNFSSSH-----SSSFLLAYSQL---A 60

Query: 61  LDPMLESPGFLHSEV-SYSGSSGPCSSYGSPT-SQPGLIERSMSSHSLRKNGLSHGPSTR 120
           LDP+LESP  L  EV SYSGSSGPCSSYGSPT SQP LI+RSMSS SL+K+ + HGP  R
Sbjct: 61  LDPVLESPDLLPLEVISYSGSSGPCSSYGSPTSSQPALIQRSMSSQSLQKDRVRHGPGAR 120

Query: 121 VSALFDAEGP-VRRVYSSGDLPGRAERACSSESSLIIEGMTKACRYSPEEKRERIEKYKI 180
           +S+L D + P VRRVYSSGDL GR ER CSSESSLIIEGMTKACRYSPEEK+ERIE+YK 
Sbjct: 121 ISSLIDTDMPAVRRVYSSGDLQGRTERGCSSESSLIIEGMTKACRYSPEEKKERIERYKS 180

Query: 181 KRNQRNFNKKIKSNHDGGIWQYECRKTLADSRKRVRGRFARNEETES-----------SC 240
           KRNQRNFNKKIK         YECRKTLADSR+R+RGRFARNEE E+           SC
Sbjct: 181 KRNQRNFNKKIK---------YECRKTLADSRRRIRGRFARNEEIENSNSTSSPLEAWSC 240

Query: 241 YDNAMVDE--EAQDDGSWITFLDSY 248
           YDN MV E    QDDGSWITFLDSY
Sbjct: 241 YDNPMVKELDTTQDDGSWITFLDSY 247

[Close]

BLAST of Spg005956 vs. NCBI nr
Match: KAG7019213.1 (Zinc finger protein CONSTANS-LIKE 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 288.1 bits (736), Expect = 7.3e-74
Identity = 169/265 (63.77%), Postives = 189/265 (71.32%), Query Frame = 0


Query: 1   MHSHFAATADASLCHLHSPDLAVSPPPFSSFPNLISSHSSSSSSSSSLLAYSQLLGSELD 60
           MH+  +AT +ASLCHL +PDLA+SPP  +SFP+ ISSHSSS         +S LL S+L 
Sbjct: 1   MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSS---------FSSLLASDLV 60

Query: 61  PMLESPGFLHSEVSYSGSSGPCSSYGSPTSQPGLIERSMSSHSLRKNGLSHGPSTRVSAL 120
           PMLESPG L SE+SYS SSGPCSSYGSPTS+P   +RSM           H P+ ++S L
Sbjct: 61  PMLESPGLLPSELSYSCSSGPCSSYGSPTSKP---QRSM----------RHRPNVQISTL 120

Query: 121 FDAEGPVRRVYSSGDLPGRAERACSSESSLIIEGM-TKACRYSPEEKRERIEKYKIKRNQ 180
           FD E  VRR YS  DL GR E A SSESSLIIEGM TKACRYSPEEKR+RIEKYK KRNQ
Sbjct: 121 FDLESSVRRAYSFNDLQGRTEMASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQ 180

Query: 181 RNFNKKIKSNHDGGIWQYECRKTLADSRKRVRGRFARNEETES-----------SCYDNA 240
           RNFNKKIK         YECRKTLADSR+R+RGRFARNEE E+           SCYDNA
Sbjct: 181 RNFNKKIK---------YECRKTLADSRRRIRGRFARNEEVENSNSTSSPTETWSCYDNA 234

Query: 241 MVDEEAQDDGSWITFLDSYSVNFIP 254
             +E  QDDGSWITFLDSYSVNFIP
Sbjct: 241 TAEEVGQDDGSWITFLDSYSVNFIP 234

[Close]

BLAST of Spg005956 vs. NCBI nr
Match: XP_022970463.1 (zinc finger protein CONSTANS-LIKE 5-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 280.4 bits (716), Expect = 1.5e-71
Identity = 166/265 (62.64%), Postives = 184/265 (69.43%), Query Frame = 0


Query: 1   MHSHFAATADASLCHLHSPDLAVSPPPFSSFPNLISSHSSSSSSSSSLLAYSQLLGSELD 60
           MH+  +AT +ASLCHL +PDLAVSPP  +SFP+ ISSHSS             LL SEL 
Sbjct: 1   MHAFSSATLEASLCHLPTPDLAVSPPLLASFPHFISSHSS-------------LLASELA 60

Query: 61  PMLESPGFLHSEVSYSGSSGPCSSYGSPTSQPGLIERSMSSHSLRKNGLSHGPSTRVSAL 120
           PMLE  G L SE+SYS SSGPCSSY SPTS+P   +RSM          SHGP  ++S L
Sbjct: 61  PMLEPSGLLPSELSYSCSSGPCSSYESPTSKP---QRSM----------SHGPGVQISML 120

Query: 121 FDAEGPVRRVYSSGDLPGRAERACSSESSLIIEGM-TKACRYSPEEKRERIEKYKIKRNQ 180
           FD E  VRR Y S DL GR E   S+ESSLIIEGM TKACRYSPEEKR+RIEKYK KRNQ
Sbjct: 121 FDLESSVRRAYRSNDLQGRTEMTNSNESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQ 180

Query: 181 RNFNKKIKSNHDGGIWQYECRKTLADSRKRVRGRFARNEETES-----------SCYDNA 240
           RNFNKKIK         YECRKTLADSR+R+RGRFARNEE E+           SCYDNA
Sbjct: 181 RNFNKKIK---------YECRKTLADSRRRIRGRFARNEEVENSNSTSSPTETWSCYDNA 230

Query: 241 MVDEEAQDDGSWITFLDSYSVNFIP 254
             +E+ QDDGSWITFLDSYSVNFIP
Sbjct: 241 TTEEDGQDDGSWITFLDSYSVNFIP 230

[Close]

BLAST of Spg005956 vs. ExPASy TrEMBL
Match: A0A0A0LUR6 (CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G497300 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 3.1e-78
Identity = 180/262 (68.70%), Postives = 198/262 (75.57%), Query Frame = 0


Query: 1   MHSHFAATADASLCHLHSPDLAVSPPPFSSFPNLISSHSSSSSSSSSLLAYSQLLGSELD 60
           MHS F+   D S+ HLHSPDL VSPP F SFPN  SSH     SSS LLAYSQL    L+
Sbjct: 1   MHS-FSPAVDTSIFHLHSPDLIVSPPLFPSFPNFSSSH-----SSSFLLAYSQL---ALN 60

Query: 61  PMLESPGFLHSEV-SYSGSSGPCSSYGSPT-SQPGLIERSMSSHSLRKNGLSHGPSTRVS 120
           P+LESP  L SEV SYSGSSGPCSSYGSPT SQP LI+RSMSS SL+K+ + HGP  R+S
Sbjct: 61  PVLESPELLPSEVISYSGSSGPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARIS 120

Query: 121 ALFDAEGP-VRRVYSSGDLPGRAERACSSESSLIIEGMTKACRYSPEEKRERIEKYKIKR 180
           +L D + P VRRVYSSGDL GR ER CSSESSLIIEGMTKACRYSPEEKRERIE+YK KR
Sbjct: 121 SLIDTDMPAVRRVYSSGDLQGRTERGCSSESSLIIEGMTKACRYSPEEKRERIERYKTKR 180

Query: 181 NQRNFNKKIKSNHDGGIWQYECRKTLADSRKRVRGRFARNEETES-----------SCYD 240
           NQRNFNKKIK         YECRKTLADSR+R+RGRFARNEE E+           SCY+
Sbjct: 181 NQRNFNKKIK---------YECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYE 240

Query: 241 NAMVDEE-AQDDGSWITFLDSY 248
           N MV+E+  QDDGSWITFLDSY
Sbjct: 241 NPMVEEDTVQDDGSWITFLDSY 244

[Close]

BLAST of Spg005956 vs. ExPASy TrEMBL
Match: A0A1S3C703 (zinc finger protein CONSTANS-LIKE 3-like OS=Cucumis melo OX=3656 GN=LOC103497191 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 6.4e-76
Identity = 180/265 (67.92%), Postives = 195/265 (73.58%), Query Frame = 0


Query: 1   MHSHFAATADASLCHLHSPDLAV--SPPPFSSFPNLISSHSSSSSSSSSLLAYSQLLGSE 60
           MHS F+   D S+ HLHSPDL V  SPP F SFPN  SSH     SSS LLAYSQL    
Sbjct: 1   MHS-FSPAVDTSIFHLHSPDLIVSSSPPLFPSFPNFSSSH-----SSSFLLAYSQL---A 60

Query: 61  LDPMLESPGFLHSEV-SYSGSSGPCSSYGSPT-SQPGLIERSMSSHSLRKNGLSHGPSTR 120
           LDP+LESP  L  EV SYSGSSGPCSSYGSPT SQP LI+RSMSS SL+K+ + HGP  R
Sbjct: 61  LDPVLESPDLLPLEVISYSGSSGPCSSYGSPTSSQPALIQRSMSSQSLQKDRVRHGPGAR 120

Query: 121 VSALFDAEGP-VRRVYSSGDLPGRAERACSSESSLIIEGMTKACRYSPEEKRERIEKYKI 180
           +S+L D + P VRRVYSSGDL GR ER CSSESSLIIEGMTKACRYSPEEK+ERIE+YK 
Sbjct: 121 ISSLIDTDMPAVRRVYSSGDLQGRTERGCSSESSLIIEGMTKACRYSPEEKKERIERYKS 180

Query: 181 KRNQRNFNKKIKSNHDGGIWQYECRKTLADSRKRVRGRFARNEETES-----------SC 240
           KRNQRNFNKKIK         YECRKTLADSR+R+RGRFARNEE E+           SC
Sbjct: 181 KRNQRNFNKKIK---------YECRKTLADSRRRIRGRFARNEEIENSNSTSSPLEAWSC 240

Query: 241 YDNAMVDE--EAQDDGSWITFLDSY 248
           YDN MV E    QDDGSWITFLDSY
Sbjct: 241 YDNPMVKELDTTQDDGSWITFLDSY 247

[Close]

BLAST of Spg005956 vs. ExPASy TrEMBL
Match: A0A6J1I3X3 (zinc finger protein CONSTANS-LIKE 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469436 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 7.4e-72
Identity = 166/265 (62.64%), Postives = 184/265 (69.43%), Query Frame = 0


Query: 1   MHSHFAATADASLCHLHSPDLAVSPPPFSSFPNLISSHSSSSSSSSSLLAYSQLLGSELD 60
           MH+  +AT +ASLCHL +PDLAVSPP  +SFP+ ISSHSS             LL SEL 
Sbjct: 1   MHAFSSATLEASLCHLPTPDLAVSPPLLASFPHFISSHSS-------------LLASELA 60

Query: 61  PMLESPGFLHSEVSYSGSSGPCSSYGSPTSQPGLIERSMSSHSLRKNGLSHGPSTRVSAL 120
           PMLE  G L SE+SYS SSGPCSSY SPTS+P   +RSM          SHGP  ++S L
Sbjct: 61  PMLEPSGLLPSELSYSCSSGPCSSYESPTSKP---QRSM----------SHGPGVQISML 120

Query: 121 FDAEGPVRRVYSSGDLPGRAERACSSESSLIIEGM-TKACRYSPEEKRERIEKYKIKRNQ 180
           FD E  VRR Y S DL GR E   S+ESSLIIEGM TKACRYSPEEKR+RIEKYK KRNQ
Sbjct: 121 FDLESSVRRAYRSNDLQGRTEMTNSNESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQ 180

Query: 181 RNFNKKIKSNHDGGIWQYECRKTLADSRKRVRGRFARNEETES-----------SCYDNA 240
           RNFNKKIK         YECRKTLADSR+R+RGRFARNEE E+           SCYDNA
Sbjct: 181 RNFNKKIK---------YECRKTLADSRRRIRGRFARNEEVENSNSTSSPTETWSCYDNA 230

Query: 241 MVDEEAQDDGSWITFLDSYSVNFIP 254
             +E+ QDDGSWITFLDSYSVNFIP
Sbjct: 241 TTEEDGQDDGSWITFLDSYSVNFIP 230

[Close]

BLAST of Spg005956 vs. ExPASy TrEMBL
Match: A0A6J1HLZ0 (zinc finger protein CONSTANS-LIKE 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464822 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 2.1e-71
Identity = 165/261 (63.22%), Postives = 185/261 (70.88%), Query Frame = 0


Query: 1   MHSHFAATADASLCHLHSPDLAVSPPPFSSFPNLISSHSSSSSSSSSLLAYSQLLGSELD 60
           MH+  +AT +ASLCHL +PDLA+SPP  +SFP+ ISSHSSS         +S LL S+L 
Sbjct: 1   MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSS---------FSSLLASDLV 60

Query: 61  PMLESPGFLHSEVSYSGSSGPCSSYGSPTSQPGLIERSMSSHSLRKNGLSHGPSTRVSAL 120
           PMLESPG L SE+SYS SSGPCSSYGSPTS+P   +RSM           H P+ ++S L
Sbjct: 61  PMLESPGLLPSELSYSCSSGPCSSYGSPTSKP---QRSM----------RHRPNVQISTL 120

Query: 121 FDAEGPVRRVYSSGDLPGRAERACSSESSLIIEGM-TKACRYSPEEKRERIEKYKIKRNQ 180
           FD E  VRR YS  DL GR E A SSESSLIIEGM TKACRYSPEEKR+RIEKYK KRNQ
Sbjct: 121 FDLESSVRRAYSFNDLQGRTEMASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQ 180

Query: 181 RNFNKKIKSNHDGGIWQYECRKTLADSRKRVRGRFARNEETES-----------SCYDNA 240
           RNFNKKIK         YECRKTLADSR+R+RGRFARNEE E+           SCYDNA
Sbjct: 181 RNFNKKIK---------YECRKTLADSRRRIRGRFARNEEVENSNSTSSPTETWSCYDNA 230

Query: 241 MVDEEAQDDGSWITFLDSYSV 250
             +E  QDDGSWITFLDSYSV
Sbjct: 241 TAEEVGQDDGSWITFLDSYSV 230

[Close]

BLAST of Spg005956 vs. ExPASy TrEMBL
Match: A0A6J1DVX1 (uncharacterized protein LOC111023585 OS=Momordica charantia OX=3673 GN=LOC111023585 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 7.6e-69
Identity = 160/248 (64.52%), Postives = 181/248 (72.98%), Query Frame = 0


Query: 11  ASLCHLHSPDLAVSP-PPFSSFPNLISSHSSSSSSSSSLLAYSQLLGSELDPMLESPGFL 70
           A+LCHLHSPD+A+SP PPF S PN   SH     S S L AY QLL  +LD + ES G L
Sbjct: 7   AALCHLHSPDIAISPLPPFPSLPNFSLSH----YSPSPLSAYCQLLRCQLDSVPESEGLL 66

Query: 71  HSEVSYSGSSGPCSSYGSPTSQPGLIERSMSSHSLRKNGLSHGPSTRVSALFDAEGPVRR 130
           +SEVSYSGSSGPCSS GSPTSQPGLI+RS+SSH L           ++SAL    GPVRR
Sbjct: 67  NSEVSYSGSSGPCSSNGSPTSQPGLIQRSLSSHGL---------DLQLSAL----GPVRR 126

Query: 131 VYSSGDLPGRAERACSSESSLIIEGMTKACRYSPEEKRERIEKYKIKRNQRNFNKKIKSN 190
           V+S+GDL GRAER  SSESSLIIEGM KACRYSPEEKRERIE+YK KRNQRNFNKKIK  
Sbjct: 127 VHSAGDLQGRAERGWSSESSLIIEGMAKACRYSPEEKRERIERYKTKRNQRNFNKKIK-- 186

Query: 191 HDGGIWQYECRKTLADSRKRVRGRFARNEETESSCYDNAMVDE----EAQDDGSWITFLD 250
                  YECRKTLADSR+R+RGRFARNEETE   +  + V+       +DDGSWI+FLD
Sbjct: 187 -------YECRKTLADSRRRIRGRFARNEETEHKNFTTSPVESWSYATGEDDGSWISFLD 228

Query: 251 SYSVNFIP 254
           S SVN +P
Sbjct: 247 SCSVNLVP 228

[Close]

BLAST of Spg005956 vs. TAIR 10
Match: AT5G59990.1 (CCT motif family protein )

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-30
Identity = 105/250 (42.00%), Postives = 139/250 (55.60%), Query Frame = 0


Query: 8   TADASLCHLHSPDLAVSPPPFSSFPNLISSHSSSSSSSSSLLAYSQ--LLGSELDPMLES 67
           + D   C L+S D+ V+PP       L   H        +LL  SQ  L  +E    +  
Sbjct: 11  SGDNCPCFLYSDDI-VAPPQL-----LDHHHHQFPPPPLALLMMSQNSLYAAE---AVSG 70

Query: 68  PGFLHSEVSYSGSSGPCSSYGSPTS--QPGLIERSMSSHSLRKNGLSHGPSTRVSALFDA 127
            G+  S ++  G S  C S  S  S  +  +++RS+SSH    NG S   +     + D 
Sbjct: 71  FGYFDSGMNGGGGSSSCDSPSSMGSGGESLVMQRSVSSH----NGFSGNYTAAHDFVNDD 130

Query: 128 EGPVRRVYSSGDLPGRAERACS---SESSLIIEGMTKACRYSPEEKRERIEKYKIKRNQR 187
           +GPVRR  S+GDLP  + R  S   SES+ IIEGM+KA +YSPEEK+E+IEKY+ KRN R
Sbjct: 131 DGPVRRALSAGDLPRSSRRESSTVWSESNAIIEGMSKAYKYSPEEKKEKIEKYRSKRNLR 190

Query: 188 NFNKKIKSNHDGGIWQYECRKTLADSRKRVRGRFARNEETESSCYDNAMVDEEAQDDGSW 247
           NFNK+IK         YECRKTLADSR R+RGRFARN+E       + M +    D  +W
Sbjct: 191 NFNKRIK---------YECRKTLADSRPRIRGRFARNDEISQQEQVDVM-EAVVGDVDTW 237

Query: 248 ITFLDSYSVN 251
            +FLDS+S N
Sbjct: 251 ASFLDSFSAN 237

[Close]

BLAST of Spg005956 vs. TAIR 10
Match: AT5G59990.2 (CCT motif family protein )

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-17
Identity = 76/187 (40.64%), Postives = 103/187 (55.08%), Query Frame = 0


Query: 8   TADASLCHLHSPDLAVSPPPFSSFPNLISSHSSSSSSSSSLLAYSQ--LLGSELDPMLES 67
           + D   C L+S D+ V+PP       L   H        +LL  SQ  L  +E    +  
Sbjct: 11  SGDNCPCFLYSDDI-VAPPQL-----LDHHHHQFPPPPLALLMMSQNSLYAAE---AVSG 70

Query: 68  PGFLHSEVSYSGSSGPCSSYGSPTS--QPGLIERSMSSHSLRKNGLSHGPSTRVSALFDA 127
            G+  S ++  G S  C S  S  S  +  +++RS+SSH    NG S   +     + D 
Sbjct: 71  FGYFDSGMNGGGGSSSCDSPSSMGSGGESLVMQRSVSSH----NGFSGNYTAAHDFVNDD 130

Query: 128 EGPVRRVYSSGDLPGRAERACS---SESSLIIEGMTKACRYSPEEKRERIEKYKIKRNQR 187
           +GPVRR  S+GDLP  + R  S   SES+ IIEGM+KA +YSPEEK+E+IEKY+ KRN R
Sbjct: 131 DGPVRRALSAGDLPRSSRRESSTVWSESNAIIEGMSKAYKYSPEEKKEKIEKYRSKRNLR 184

[Close]

BLAST of Spg005956 vs. TAIR 10
Match: AT5G41380.1 (CCT motif family protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-15
Identity = 79/216 (36.57%), Postives = 111/216 (51.39%), Query Frame = 0


Query: 31  FPNLISSHSSSSSSSSSL---LAYSQLLGSELDPM---LESPGFLHSEVSYSGSSGPCS- 90
           F +    H  SSS  S L   L+ SQ + + L P     +    + +E  + G +   + 
Sbjct: 55  FDHFTPQHILSSSPPSDLLGTLSLSQHIPTGLYPNFSDFQISDAVKTEKFFDGHNQAATM 114

Query: 91  --SYGSPTSQPGLIERSMSSHSLR--------------KNGLSHGP-STRVSALFDAEGP 150
             SY +  +    ++RS SS+S+                + LS+   S+  +A F ++  
Sbjct: 115 ARSYSTIENSGRYMQRSFSSNSVEGKQTQVPFNIPMMDSSNLSYNNLSSPENAFFSSQ-- 174

Query: 151 VRRVYSSGDLPGRAERACSSESSLI---IEGMTKACRYSPEEKRERIEKYKIKRNQRNFN 210
           +RRVYS+GDL    E   SSE+S +    E   K  RYS EE++E+I KY+ KRNQRNF 
Sbjct: 175 MRRVYSTGDLQNNMEMQRSSENSTMPFSEEQNFKVGRYSAEERKEKISKYRAKRNQRNFT 234

Query: 211 KKIKSNHDGGIWQYECRKTLADSRKRVRGRFARNEE 220
           K IK         Y CRKTLADSR R+RGRFARN+E
Sbjct: 235 KTIK---------YACRKTLADSRPRIRGRFARNDE 259

[Close]

BLAST of Spg005956 vs. TAIR 10
Match: AT1G63820.1 (CCT motif family protein )

HSP 1 Score: 75.9 bits (185), Expect = 5.3e-14
Identity = 57/128 (44.53%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 127 VRRVYSSGDLP--GR---AERACSS----ESSLII-----EGMTKACRYSPEEKRERIEK 186
           +RRVYS+GDL   GR    +R+ SS    ESS        E   +  RYS EE++E+I K
Sbjct: 139 MRRVYSTGDLQNLGRDFTGQRSYSSPLAAESSPTTVFSGDEQSLRVGRYSSEERKEKISK 198

Query: 187 YKIKRNQRNFNKKIKSNHDGGIWQYECRKTLADSRKRVRGRFARNEETESSCYDNAMVDE 241
           Y+ KR QRNF K IK         Y CRKTLAD+R RVRGRFARN+E   +    +    
Sbjct: 199 YRAKRTQRNFTKTIK---------YACRKTLADNRPRVRGRFARNDEVFENPKIASSFTR 257

[Close]

BLAST of Spg005956 vs. TAIR 10
Match: AT3G12890.1 (activator of spomin::LUC2 )

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-12
Identity = 42/76 (55.26%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 145 SSESSLIIEGMTKACRYSPEEKRERIEKYKIKRNQRNFNKKIKSNHDGGIWQYECRKTLA 204
           +SE  +  E  TK  RYS EE+++RI +Y  K+NQRNFNK IK         Y CRKTLA
Sbjct: 118 NSEGGIQAEPNTKVGRYSVEERKDRIMRYLKKKNQRNFNKTIK---------YVCRKTLA 177

Query: 205 DSRKRVRGRFARNEET 221
           D R RVRGRFARN +T
Sbjct: 178 DRRVRVRGRFARNNDT 184

The following BLAST results are available for this feature:

BLAST of Spg005956 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895146.1	1.8e-88	75.29	zinc finger protein CONSTANS-LIKE 5-like [Benincasa hispida]	[more]
XP_011657991.1	6.4e-78	68.70	two-component response regulator-like APRR9 isoform X1 [Cucumis sativus] >KGN656...	[more]
XP_008457517.1	1.3e-75	67.92	PREDICTED: zinc finger protein CONSTANS-LIKE 3-like [Cucumis melo]	[more]
KAG7019213.1	7.3e-74	63.77	Zinc finger protein CONSTANS-LIKE 5, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_022970463.1	1.5e-71	62.64	zinc finger protein CONSTANS-LIKE 5-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Spg005956 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg005956 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUR6	3.1e-78	68.70	CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G497300 PE=4 SV...	[more]
A0A1S3C703	6.4e-76	67.92	zinc finger protein CONSTANS-LIKE 3-like OS=Cucumis melo OX=3656 GN=LOC103497191...	[more]
A0A6J1I3X3	7.4e-72	62.64	zinc finger protein CONSTANS-LIKE 5-like isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1HLZ0	2.1e-71	63.22	zinc finger protein CONSTANS-LIKE 5-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1DVX1	7.6e-69	64.52	uncharacterized protein LOC111023585 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of Spg005956 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59990.1	1.1e-30	42.00	CCT motif family protein	[more]
AT5G59990.2	1.3e-17	40.64	CCT motif family protein	[more]
AT5G41380.1	1.6e-15	36.57	CCT motif family protein	[more]
AT1G63820.1	5.3e-14	44.53	CCT motif family protein	[more]
AT3G12890.1	1.7e-12	55.26	activator of spomin::LUC2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 167..217 e-value: 8.0E-13 score: 48.3
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 175..217 score: 9.057829
None	No IPR available	PANTHER	PTHR31319	ZINC FINGER PROTEIN CONSTANS-LIKE 4	coord: 7..248
None	No IPR available	PANTHER	PTHR31319:SF73	CCT MOTIF FAMILY PROTEIN	coord: 7..248

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005956.1	Spg005956.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009909	regulation of flower development
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding