Spg005934 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg005934
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionmetallothionein-like protein LSC54
Locationscaffold11: 2124414 .. 2125392 (-)
RNA-Seq ExpressionSpg005934
SyntenySpg005934
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAAAAATCCCACAGAGGTTTTGAAAATATTTTGGTTAAGTCTCTGAAACAAAAATGGCTTCTGGCTGCAAGTGTGGTGACAATTGCTCCTGTGGAGATAGCTGCAATTGCCTCTCTGGGTCTCTCTCATCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTTTTTTTATTCATTTTGTTTTTGAAGATTTAGAGGAGAAAATTTGTTAGAAAACGTTCAAATCTTTTAACTTGTTACATTATTTTTTTAAGGTTAACTTGTCTTTTCTTTTTCGCTCCATTATTTTTGTTGATTGAATTTTTACATTTTTTTTTAATCTTTGCAGGAACATCAAAGAGGCCACCTCCCTTGTCAACATGTATGTAAATGAATCTAATAAGTAACTTTTTAATCTTTTTGAAAAATTTAACTTTAATAGTTATACAAGTACTACAGTAGTATTAGAAATTTTTCGTTCAACGTCGATCATGTGCAGGAACAACGGTTGTGACTGCTGCGACAGCAGCTGCTCCTGCGACGCATGCAGCTGCTGCTGAGCAACTGAAGAAATGGATGAGGCCCTCAAACAACAAAACTTGTGAAATGGAATAAATTTATATGAATCAACCTGCAAAATTAATCTGTTTTTGCTTCTCTTTTTGCACTTTGTTTGAATATGTAATGGCTACTACTTGAAATCCTAGTGTGAACTATGTAGTGCTTTGTTGTGGATTTGGATTGTTGTTTCATATCAAAACCAGAAGTGTGTGTGTTTGGATTGTGTGTTCTAATAAAAATTTGGTTTGTGTAGTAGATTCAAGATTGAGTTTGAATAACTCGAAGTTATGAAGTCAAAGGTTACGTTGTAGTTTGTTGGTTTGTGTTCTTGTCCATCTTAGAAACTATCCAAATTCAAAATTTTAACATCTATTTTAAGCTACCCAATGATTTTTACAAATCAAACACAAACTACAACGTTGGATTCTTG

mRNA sequence

ATGGCTTCTGGCTGCAAGTGTGGTGACAATTGCTCCTGTGGAGATAGCTGCAATTGCCTCTCTGGGAACATCAAAGAGGCCACCTCCCTTGTCAACATGAACAACGGTTGTGACTGCTGCGACAGCAGCTGCTCCTGCGACGCATGCAGCTGCTGCTGA

Coding sequence (CDS)

ATGGCTTCTGGCTGCAAGTGTGGTGACAATTGCTCCTGTGGAGATAGCTGCAATTGCCTCTCTGGGAACATCAAAGAGGCCACCTCCCTTGTCAACATGAACAACGGTTGTGACTGCTGCGACAGCAGCTGCTCCTGCGACGCATGCAGCTGCTGCTGA

Protein sequence

MASGCKCGDNCSCGDSCNCLSGNIKEATSLVNMNNGCDCCDSSCSCDACSCC
Homology
[Close]
BLAST of Spg005934 vs. NCBI nr
Match: KAG7019194.1 (hypothetical protein SDJN02_18152 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.8 bits (164), Expect = 3.2e-08
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 1  MASGCKCGDNCSCGDSCNCLSGNIKEATSLVNM 34
          MASGCKCGDNCSCGDSCNCLSG +KE TSL+NM
Sbjct: 1  MASGCKCGDNCSCGDSCNCLSGTVKETTSLINM 33

[Close]
BLAST of Spg005934 vs. NCBI nr
Match: XP_022997994.1 (metallothionein-like protein LSC54 [Cucurbita maxima])

HSP 1 Score: 63.2 bits (152), Expect = 7.9e-07
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 1  MASGCKCGDNCSCGDSCNCLSGNIKEATSLVNMNNGCDCCDSSCSCDACSC 52
          M SGCKCGD+CSCGDSCNC SG+I EA   +   +GC  C SSCSCD C+C
Sbjct: 30 MGSGCKCGDSCSCGDSCNCQSGSITEA--FILNKDGCS-CGSSCSCDPCNC 77

[Close]
BLAST of Spg005934 vs. ExPASy TrEMBL
Match: A0A6J1KD42 (metallothionein-like protein LSC54 OS=Cucurbita maxima OX=3661 GN=LOC111492782 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-07
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 1  MASGCKCGDNCSCGDSCNCLSGNIKEATSLVNMNNGCDCCDSSCSCDACSC 52
          M SGCKCGD+CSCGDSCNC SG+I EA   +   +GC  C SSCSCD C+C
Sbjct: 30 MGSGCKCGDSCSCGDSCNCQSGSITEA--FILNKDGCS-CGSSCSCDPCNC 77

The following BLAST results are available for this feature:
BLAST of Spg005934 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019194.13.2e-0887.88hypothetical protein SDJN02_18152 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022997994.17.9e-0764.71metallothionein-like protein LSC54 [Cucurbita maxima][more]
BLAST of Spg005934 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg005934 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KD423.8e-0764.71metallothionein-like protein LSC54 OS=Cucurbita maxima OX=3661 GN=LOC111492782 P... [more]
BLAST of Spg005934 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg005934.1Spg005934.1mRNA