Spg005927 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005927
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Elongin-C
Location	scaffold11: 1654000 .. 1655638 (-)
RNA-Seq Expression	Spg005927
Synteny	Spg005927

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGGACAGTCGAAAGTTTTTTTCTCCATTTCCATAGTTCGCTCAGCGCCAGAGGGAGAGGGAAAGAGGAATCTCTCTCAAGTCTCAAGATTCTTCAGAGCGAAATGAAGAAGGAAGAGACTGTGAAATTGATCAGCGCTGAGGGTTTCGAGTTCGTGATCCACAAGGATGCTGCCATGGTTTCTCAGACGATTCGAAACATGCTTACTTCGCCAGGTCTCTCTCTCTCCCTCTCTTGATCAATCCACTTTTTCAGACTTACGATCTCGTTTATCGGTTGTTGCTCACGTATAAAGAAGGATGAATTGGATGAAATCTTGGAACGATTGGTTTCTTTTGAATTTTTCATGTTTAATTAGGGCTTTGTTTTACTATTTTAGTTTTCATGGATAGGAAATTTTGCTGAATCGCAGCACAGAGAAGTGACTTTTCCTGAGATCAGCACCACCATTCTCGAGAAGATATGCCAATATTTTTACTGGAATCTTCAATTCGCCAGGTTTTCATTTCTTTTTTATGTCAGCTTTTCTCTTATTTTGATTTTTATTCATCCATTGTATACGATTAATTGAGATAAGTTTCCAGAATTTCTGGCGAAGTAATATTGATATGTTCCCTTGCTAATGTTTAGGATTTTAGATTCTGCTAATTTTGCTTAAACTGGTACTGTGTTGATGGTTACTATTTGAAAATGTGTACCGTTTACACTGAATCACACGGGAATGAAGCTTTTGGTGCTTAGTTTCTCAACCACTAGTCACTACTGTGTTACTAATTAGTGTCTGATGAAGATGTGAATTATCGATGTTCTTGTAGTTCTTGTTACCATTCTTGTCCATGATCTTGGTTTTTTACTTTTATTTTTGGAATTGCTTGCTAACGTAGGACTGCATCCTCTCCAATTTATTGAAATTAGAAACTGAAGTGCTGGGTGTTTAGTTCTGCCACTTGGACATTGCAGATTGATCTTAATGGTCTGAGAATTTTAGATTCTTTTAGGGAAAAAAGAAGGGAAGTTTTCTGAGAAGCCAGATAGAATATATGGTCTGGATAGAAAACTGCAGCGCTGTTTGATCCAGATCAACTTATCCTTATCCTAACACCATTAATGTTGCTATTGTTATATACTTTTAATTGTTTCTGTAAGAGAGGTCTTGTAGGCAAACTTTCAAGTTAGATGAAGTACAGATAAGAATTTTTACAAGTTAATTGGATTCGAAGTTAGATGGATCTAGTCAGAGTAAGCTCTTCTCAAAATTGCAACTGGCCAGAGTGTTTTATGGCATATGGGAGAGTGCATGCTCATGAACTTTGGTAAATTTTGTACCAAGTTTTGGATGGACAAGCATGTAAATGTTTTTGGTTAATTGTTCATTGGTGGACAACAGATGAAATCACACTTTTTATATAAACTATGTACTCGCCCTCATTTTTCTGGCATTAACTGATTAAAGATTATGTTGTTGTAAATACTTAAGTGTGTACCTCTTCATTCTCTTTGGTTCTTGTTTCATTCTTGAACTCTGTTGTCACGGACGTTGATTTCTTCCTTTTTGTCAGTGGGAAAGAGACCGAGTTCCCAATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGA

mRNA sequence

ATGAAGAAGGAAGAGACTGTGAAATTGATCAGCGCTGAGGGTTTCGAGTTCGTGATCCACAAGGATGCTGCCATGGTTTCTCAGACGATTCGAAACATGCTTACTTCGCCAGGAAATTTTGCTGAATCGCAGCACAGAGAAGTGACTTTTCCTGAGATCAGCACCACCATTCTCGAGAAGATATGCCAATATTTTTACTGGAATCTTCAATTCGCCAGGTTTTCATTTCTTTTTTATATTCTTTTAGGGAAAAAAGAAGGGAAGTTTTCTGAGAAGCCAGATAGAATATATGGTCTGGATAGAAAACTGCAGCGCTTGTGTACCTCTTCATTCTCTTTGGTTCTTGTTTCATTCTTGAACTCTGTTGTCACGGACGTTGATTTCTTCCTTTTTGTCAGTGGGAAAGAGACCGAGTTCCCAATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGA

Coding sequence (CDS)

ATGAAGAAGGAAGAGACTGTGAAATTGATCAGCGCTGAGGGTTTCGAGTTCGTGATCCACAAGGATGCTGCCATGGTTTCTCAGACGATTCGAAACATGCTTACTTCGCCAGGAAATTTTGCTGAATCGCAGCACAGAGAAGTGACTTTTCCTGAGATCAGCACCACCATTCTCGAGAAGATATGCCAATATTTTTACTGGAATCTTCAATTCGCCAGGTTTTCATTTCTTTTTTATATTCTTTTAGGGAAAAAAGAAGGGAAGTTTTCTGAGAAGCCAGATAGAATATATGGTCTGGATAGAAAACTGCAGCGCTTGTGTACCTCTTCATTCTCTTTGGTTCTTGTTTCATTCTTGAACTCTGTTGTCACGGACGTTGATTTCTTCCTTTTTGTCAGTGGGAAAGAGACCGAGTTCCCAATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGA

Protein sequence

MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT

Homology

[Close]

BLAST of Spg005927 vs. NCBI nr
Match: XP_038895699.1 (elongin-C [Benincasa hispida] >XP_038895700.1 elongin-C [Benincasa hispida])

HSP 1 Score: 172.2 bits (435), Expect = 3.6e-39
Identity = 98/158 (62.03%), Postives = 98/158 (62.03%), Query Frame = 0


Query: 1   MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
           MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1   MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61  ICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRLCTSSFSLVLVSFLN 120
           ICQYFYWNLQFA                                                
Sbjct: 61  ICQYFYWNLQFA------------------------------------------------ 98

Query: 121 SVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT 159
                       SGKETEFPIEPELTLELMMAANYLHT
Sbjct: 121 ------------SGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of Spg005927 vs. NCBI nr
Match: XP_022964706.1 (elongin-C-like [Cucurbita moschata] >XP_023519299.1 elongin-C-like [Cucurbita pepo subsp. pepo] >XP_023521052.1 elongin-C-like [Cucurbita pepo subsp. pepo] >KAG6583404.1 Elongin-C, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019170.1 Elongin-C, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.0 bits (432), Expect = 8.1e-39
Identity = 97/158 (61.39%), Postives = 98/158 (62.03%), Query Frame = 0


Query: 1   MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
           MKKEETVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1   MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61  ICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRLCTSSFSLVLVSFLN 120
           ICQYFYWNLQFA                                                
Sbjct: 61  ICQYFYWNLQFA------------------------------------------------ 98

Query: 121 SVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT 159
                       SGKETEFPIEPELTLELMMAANYLHT
Sbjct: 121 ------------SGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of Spg005927 vs. NCBI nr
Match: XP_022158132.1 (elongin-C [Momordica charantia])

HSP 1 Score: 170.2 bits (430), Expect = 1.4e-38
Identity = 97/158 (61.39%), Postives = 98/158 (62.03%), Query Frame = 0


Query: 1   MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
           MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1   MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61  ICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRLCTSSFSLVLVSFLN 120
           ICQYF+WNLQFA                                                
Sbjct: 61  ICQYFHWNLQFA------------------------------------------------ 98

Query: 121 SVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT 159
                       SGKETEFPIEPELTLELMMAANYLHT
Sbjct: 121 ------------SGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of Spg005927 vs. NCBI nr
Match: XP_008457436.1 (PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo] >XP_008457437.1 PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 3.1e-38
Identity = 96/158 (60.76%), Postives = 98/158 (62.03%), Query Frame = 0


Query: 1   MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
           MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1   MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61  ICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRLCTSSFSLVLVSFLN 120
           ICQYF+WNLQFA                                                
Sbjct: 61  ICQYFHWNLQFA------------------------------------------------ 98

Query: 121 SVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT 159
                       SGKETEFPIEPELTLELMMAANYLHT
Sbjct: 121 ------------SGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of Spg005927 vs. NCBI nr
Match: XP_022948640.1 (elongin-C-like [Cucurbita moschata] >XP_022948641.1 elongin-C-like [Cucurbita moschata] >XP_022948642.1 elongin-C-like [Cucurbita moschata] >XP_022998913.1 elongin-C-like [Cucurbita maxima] >XP_022998914.1 elongin-C-like [Cucurbita maxima] >XP_023523194.1 elongin-C-like [Cucurbita pepo subsp. pepo] >XP_023523196.1 elongin-C-like [Cucurbita pepo subsp. pepo] >XP_023523399.1 elongin-C-like [Cucurbita pepo subsp. pepo] >XP_023523400.1 elongin-C-like [Cucurbita pepo subsp. pepo] >KAG6607274.1 Elongin-C, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036952.1 Elongin-C, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.8 bits (421), Expect = 1.5e-37
Identity = 95/158 (60.13%), Postives = 97/158 (61.39%), Query Frame = 0


Query: 1   MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
           MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEK
Sbjct: 1   MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEK 60

Query: 61  ICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRLCTSSFSLVLVSFLN 120
           ICQYFYW+LQFA                                                
Sbjct: 61  ICQYFYWHLQFA------------------------------------------------ 98

Query: 121 SVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT 159
                       SGKETEFPIEPELTLELMMAANYLHT
Sbjct: 121 ------------SGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of Spg005927 vs. ExPASy Swiss-Prot
Match: Q2KII4 (Elongin-C OS=Bos taurus OX=9913 GN=ELOC PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 46/150 (30.67%), Postives = 68/150 (45.33%), Query Frame = 0


Query: 7   VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFY 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRLCTSSFSLVLVSFLNSVVTDV 126
           + +++   S              +E P                                 
Sbjct: 79  YKVRYTNSS--------------TEIP--------------------------------- 110

Query: 127 DFFLFVSGKETEFPIEPELTLELMMAANYL 157
                      EFPI PE+ LEL+MAAN+L
Sbjct: 139 -----------EFPIAPEIALELLMAANFL 110

[Close]

BLAST of Spg005927 vs. ExPASy Swiss-Prot
Match: Q15369 (Elongin-C OS=Homo sapiens OX=9606 GN=ELOC PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 46/150 (30.67%), Postives = 68/150 (45.33%), Query Frame = 0


Query: 7   VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFY 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRLCTSSFSLVLVSFLNSVVTDV 126
           + +++   S              +E P                                 
Sbjct: 79  YKVRYTNSS--------------TEIP--------------------------------- 110

Query: 127 DFFLFVSGKETEFPIEPELTLELMMAANYL 157
                      EFPI PE+ LEL+MAAN+L
Sbjct: 139 -----------EFPIAPEIALELLMAANFL 110

[Close]

BLAST of Spg005927 vs. ExPASy Swiss-Prot
Match: P83940 (Elongin-C OS=Mus musculus OX=10090 GN=Eloc PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 46/150 (30.67%), Postives = 68/150 (45.33%), Query Frame = 0


Query: 7   VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFY 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRLCTSSFSLVLVSFLNSVVTDV 126
           + +++   S              +E P                                 
Sbjct: 79  YKVRYTNSS--------------TEIP--------------------------------- 110

Query: 127 DFFLFVSGKETEFPIEPELTLELMMAANYL 157
                      EFPI PE+ LEL+MAAN+L
Sbjct: 139 -----------EFPIAPEIALELLMAANFL 110

[Close]

BLAST of Spg005927 vs. ExPASy Swiss-Prot
Match: P83941 (Elongin-C OS=Rattus norvegicus OX=10116 GN=Eloc PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 46/150 (30.67%), Postives = 68/150 (45.33%), Query Frame = 0


Query: 7   VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFY 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRLCTSSFSLVLVSFLNSVVTDV 126
           + +++   S              +E P                                 
Sbjct: 79  YKVRYTNSS--------------TEIP--------------------------------- 110

Query: 127 DFFLFVSGKETEFPIEPELTLELMMAANYL 157
                      EFPI PE+ LEL+MAAN+L
Sbjct: 139 -----------EFPIAPEIALELLMAANFL 110

[Close]

BLAST of Spg005927 vs. ExPASy Swiss-Prot
Match: Q9USX9 (Elongin-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=elc1 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-10
Identity = 31/69 (44.93%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 3  KEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKIC 62
          ++E V+LIS +GF F++ K+ A +S TIR +L + G F+E+Q  E TFP+I  T+LEK+C
Sbjct: 2  EKEYVRLISGDGFVFILEKEIACLSGTIRAIL-NEGIFSEAQKNECTFPDIRATLLEKVC 61

Query: 63 QYFYWNLQF 72
          +Y ++N ++
Sbjct: 62 EYLHYNYRY 69

[Close]

BLAST of Spg005927 vs. ExPASy TrEMBL
Match: A0A6J1HJP6 (Elongin-C OS=Cucurbita moschata OX=3662 GN=LOC111464707 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 3.9e-39
Identity = 97/158 (61.39%), Postives = 98/158 (62.03%), Query Frame = 0


Query: 1   MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
           MKKEETVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1   MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61  ICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRLCTSSFSLVLVSFLN 120
           ICQYFYWNLQFA                                                
Sbjct: 61  ICQYFYWNLQFA------------------------------------------------ 98

Query: 121 SVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT 159
                       SGKETEFPIEPELTLELMMAANYLHT
Sbjct: 121 ------------SGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of Spg005927 vs. ExPASy TrEMBL
Match: A0A6J1DWE1 (Elongin-C OS=Momordica charantia OX=3673 GN=LOC111024690 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 6.7e-39
Identity = 97/158 (61.39%), Postives = 98/158 (62.03%), Query Frame = 0


Query: 1   MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
           MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1   MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61  ICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRLCTSSFSLVLVSFLN 120
           ICQYF+WNLQFA                                                
Sbjct: 61  ICQYFHWNLQFA------------------------------------------------ 98

Query: 121 SVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT 159
                       SGKETEFPIEPELTLELMMAANYLHT
Sbjct: 121 ------------SGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of Spg005927 vs. ExPASy TrEMBL
Match: A0A1S3C6T3 (Elongin-C OS=Cucumis melo OX=3656 GN=LOC103497125 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.5e-38
Identity = 96/158 (60.76%), Postives = 98/158 (62.03%), Query Frame = 0


Query: 1   MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
           MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1   MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61  ICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRLCTSSFSLVLVSFLN 120
           ICQYF+WNLQFA                                                
Sbjct: 61  ICQYFHWNLQFA------------------------------------------------ 98

Query: 121 SVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT 159
                       SGKETEFPIEPELTLELMMAANYLHT
Sbjct: 121 ------------SGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of Spg005927 vs. ExPASy TrEMBL
Match: A0A0A0LY44 (Elongin-C OS=Cucumis sativus OX=3659 GN=Csa_1G525280 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.5e-38
Identity = 96/158 (60.76%), Postives = 98/158 (62.03%), Query Frame = 0


Query: 1   MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
           MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1   MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61  ICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRLCTSSFSLVLVSFLN 120
           ICQYF+WNLQFA                                                
Sbjct: 61  ICQYFHWNLQFA------------------------------------------------ 98

Query: 121 SVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT 159
                       SGKETEFPIEPELTLELMMAANYLHT
Sbjct: 121 ------------SGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of Spg005927 vs. ExPASy TrEMBL
Match: A0A6J1KFM7 (Elongin-C OS=Cucurbita maxima OX=3661 GN=LOC111493436 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 7.4e-38
Identity = 95/158 (60.13%), Postives = 97/158 (61.39%), Query Frame = 0


Query: 1   MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
           MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEK
Sbjct: 1   MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEK 60

Query: 61  ICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRLCTSSFSLVLVSFLN 120
           ICQYFYW+LQFA                                                
Sbjct: 61  ICQYFYWHLQFA------------------------------------------------ 98

Query: 121 SVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT 159
                       SGKETEFPIEPELTLELMMAANYLHT
Sbjct: 121 ------------SGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of Spg005927 vs. TAIR 10
Match: AT5G59140.1 (BTB/POZ domain-containing protein )

HSP 1 Score: 132.5 bits (332), Expect = 3.0e-31
Identity = 78/154 (50.65%), Postives = 87/154 (56.49%), Query Frame = 0


Query: 5   ETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQY 64
           ETVKLIS EGFEFVI ++AAMVSQTIR+MLTSPG F+ES+   VTFP+ISTTILEKICQY
Sbjct: 3   ETVKLISMEGFEFVIDREAAMVSQTIRSMLTSPGGFSESKDGVVTFPDISTTILEKICQY 62

Query: 65  FYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRLCTSSFSLVLVSFLNSVVT 124
           FYW+LQ++R                                                   
Sbjct: 63  FYWSLQYSR--------------------------------------------------- 96

Query: 125 DVDFFLFVSGKETEFPIEPELTLELMMAANYLHT 159
                    GKETEF IEPELTLELMMAANYLHT
Sbjct: 123 ---------GKETEFHIEPELTLELMMAANYLHT 96

The following BLAST results are available for this feature:

BLAST of Spg005927 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895699.1	3.6e-39	62.03	elongin-C [Benincasa hispida] >XP_038895700.1 elongin-C [Benincasa hispida]	[more]
XP_022964706.1	8.1e-39	61.39	elongin-C-like [Cucurbita moschata] >XP_023519299.1 elongin-C-like [Cucurbita pe...	[more]
XP_022158132.1	1.4e-38	61.39	elongin-C [Momordica charantia]	[more]
XP_008457436.1	3.1e-38	60.76	PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo] >XP_00...	[more]
XP_022948640.1	1.5e-37	60.13	elongin-C-like [Cucurbita moschata] >XP_022948641.1 elongin-C-like [Cucurbita mo...	[more]

BLAST of Spg005927 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2KII4	1.1e-11	30.67	Elongin-C OS=Bos taurus OX=9913 GN=ELOC PE=1 SV=1	[more]
Q15369	1.1e-11	30.67	Elongin-C OS=Homo sapiens OX=9606 GN=ELOC PE=1 SV=1	[more]
P83940	1.1e-11	30.67	Elongin-C OS=Mus musculus OX=10090 GN=Eloc PE=1 SV=1	[more]
P83941	1.1e-11	30.67	Elongin-C OS=Rattus norvegicus OX=10116 GN=Eloc PE=1 SV=1	[more]
Q9USX9	1.7e-10	44.93	Elongin-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=el...	[more]

BLAST of Spg005927 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJP6	3.9e-39	61.39	Elongin-C OS=Cucurbita moschata OX=3662 GN=LOC111464707 PE=3 SV=1	[more]
A0A6J1DWE1	6.7e-39	61.39	Elongin-C OS=Momordica charantia OX=3673 GN=LOC111024690 PE=3 SV=1	[more]
A0A1S3C6T3	1.5e-38	60.76	Elongin-C OS=Cucumis melo OX=3656 GN=LOC103497125 PE=3 SV=1	[more]
A0A0A0LY44	1.5e-38	60.76	Elongin-C OS=Cucumis sativus OX=3659 GN=Csa_1G525280 PE=3 SV=1	[more]
A0A6J1KFM7	7.4e-38	60.13	Elongin-C OS=Cucurbita maxima OX=3661 GN=LOC111493436 PE=3 SV=1	[more]

BLAST of Spg005927 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59140.1	3.0e-31	50.65	BTB/POZ domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..158 e-value: 8.3E-4 score: 14.9
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 5..157 e-value: 4.3E-24 score: 86.9
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 6..72
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 6..67 e-value: 4.4E-8 score: 33.2
None	No IPR available	PANTHER	PTHR20648:SF0	ELONGIN-C	coord: 2..158
None	No IPR available	CDD	cd18321	BTB_POZ_EloC	coord: 6..158 e-value: 2.39759E-38 score: 124.238
IPR039948	Elongin-C	PANTHER	PTHR20648	ELONGIN-C	coord: 2..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005927.1	Spg005927.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process