Spg005908 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005908
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Rab5-interacting
Location	scaffold11: 1933164 .. 1935292 (+)
RNA-Seq Expression	Spg005908
Synteny	Spg005908

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGTTCTTCACGTTCTAGAGAGAGAAATTAGAGAGAGAGAGAGTGAGAGTGATTTTGCTGACCAACAAATTTTCATAAAACTACAATTTCCCACTTCAGATTGAAATCGATTTCATCAAAATTTTATAATAACAAATCGAAAGAGATCTACAGAAAAGCCGTCTCCTGAATTTGTTTAATCCATTCCTACACTCTCATGCCGTTCTTGTTGTTCCAAAACCCTAGCATCTTCTGATCTTCCCTCCAAATTCCAATCCTCACTCAACTGGGTATTTCGAATTTTCCCCCAAATCTTCGATTTCCGATCAGTCAGCAACACCATGAAGGACGGGAAGTCGATTAAGGTCAATTCTCAGTTCCAGCACCAGAACGGTCACTTGCCGCCCTTCAAGTTGGCCAAATTGTTCGATCCAGAGGCTTCGTGGGATAAGGTTTTCTTAAACTTTGCTTTCTTCTGAATTCTACACTTTCAGCCCAATGGAAATTCTTATAATTCTGTGTTTTCTGGGATGTTTTGTTTCTCTTTTTTTCGCTGTGCACGAGAAGGAACTGAAGTCTTTATTGGTTCAAGTTGTTGCTTGTTCTGCTGTAGTGATTTTTAGTTTCTAACTGTGAAATATGTGCATTACTCATGAATTTTAACGAATTAAGATAGTTTATCCATAATCGTAGTGTGTATTAGTATAAAGATATCTAGTATTTGGTCAATCCGAGCATAGCTTAGCGGACAAAACACCAATTACCATCCTAAGGTTGATGATTCAGTTGTAGCTATTTTTATGATTGAATACCATTGATAAAGGAAGAGGAAAAGAAGCCATGAATGAGAACATTTTATACCTGGTATCTGAAATCAATTGGATGGGAAAATTCTTACTAAAGCTGTGCTTTGGCCTTTGGCTTGAACCTCTTTTACAACTCATTTTGTTCTGTTCTCAACTCAGGATCAACTAGGAGATGTCTTGCATTGGATGCGACAGTCGGTTGCGTTTGTATGTGGACTGCTTTGGGGTTCGATACCTCTGGTTGGAGGCGTTTGGTTCATCTTGTAAGTTGCCATTTTTATACCTTTCTCTCTGGCATATATGTGTTTAGGATCGCTTTTGGGCACAGTGTTTCTGAACGAAACTTTCCCATATTAACACTTTTGGAAAGCATACTAATTAAGTCATTCCAAGCATTTTAAATTGTTTTACAACTGGTCTTTTAAGAACTGAACATCATGAAAATTTTGAAGATGGTTTAGTAAATCAAAGATACTTTTAGCATGGTAAAAGAACTGCCAAAACACACTATTAGTGTTGTTTGTTTTTTCCTTTTACCTTCATTAGTAATTTACACATCCTTTCCACATCTTCATCTTTTTCAATGAGTCGGTTAGTTCCTTAAAATGAACCAGAGTATAACTCAATTGATTGAGACATATACGTACCCCTCAATCAAGAGGTTAGAGATTTGAATCTCCCCACCCCCACATGTTGAACTCAAAATATGAATCTCTCGTCCAATATGTTAGCATCCATGATTGCATGTCTCCATGCCTGCAACCTTCATCTCAACAGCAAAATAGAAAAATTGACTGTCTTGTAGTATCAACTATCATTATCTGAAATATCATATTTACACAATTCATTATGCATTTTTTGAGTTCTCTCTACTAAACATTTCTTTTCTTGCACTTGGAAACTTTAGTTAATTTGATGATTTTGGTCTCATTTTCAGATTCTTGGTGATATCAACTACGATGGTATATGGATACTATGCAATGATTTTGAAAGTAGACGAAGAAGAATTCGGGGGTCATGGAGTTCTCCTCCAGGAAGGGCTTTTTGCTTCCATAACTCTGTTTCTGGTAATCTTATGGCATCTTTTAACTCTCCCTCTCTGTCTTCTGATCACAATCTGCATTTTCTGCTTGTGCAAGCTGCTGAGTCTTTTGTTAGTTCAAGTTCTTATTTTCTTTTTCTTCTGTGTTGTTCAGCTTATGTGGACTCTCGTTTACAGCTTGGGACATTTCTGATGATGGTTTTGTCATCGTTCTCGATACCGGGCGAAGCTATGAAGGGGACGTTGGCTGCCATTGTTGCTTGCTTTTTGATTAGTGATTGTGCAGTAGCTTGCAGTTAA

mRNA sequence

ATGAAGGACGGGAAGTCGATTAAGGTCAATTCTCAGTTCCAGCACCAGAACGGTCACTTGCCGCCCTTCAAGTTGGCCAAATTGTTCGATCCAGAGGCTTCGTGGGATAAGGATCAACTAGGAGATGTCTTGCATTGGATGCGACAGTCGGTTGCGTTTGTATGTGGACTGCTTTGGGGTTCGATACCTCTGGTTGGAGGCGTTTGGTTCATCTTATTCTTGGTGATATCAACTACGATGGTATATGGATACTATGCAATGATTTTGAAAGTAGACGAAGAAGAATTCGGGGGTCATGGAGTTCTCCTCCAGGAAGGGCTTTTTGCTTCCATAACTCTGTTTCTGCTTGGGACATTTCTGATGATGGTTTTGTCATCGTTCTCGATACCGGGCGAAGCTATGAAGGGGACGTTGGCTGCCATTGTTGCTTGCTTTTTGATTAGTGATTGTGCAGTAGCTTGCAGTTAA

Coding sequence (CDS)

ATGAAGGACGGGAAGTCGATTAAGGTCAATTCTCAGTTCCAGCACCAGAACGGTCACTTGCCGCCCTTCAAGTTGGCCAAATTGTTCGATCCAGAGGCTTCGTGGGATAAGGATCAACTAGGAGATGTCTTGCATTGGATGCGACAGTCGGTTGCGTTTGTATGTGGACTGCTTTGGGGTTCGATACCTCTGGTTGGAGGCGTTTGGTTCATCTTATTCTTGGTGATATCAACTACGATGGTATATGGATACTATGCAATGATTTTGAAAGTAGACGAAGAAGAATTCGGGGGTCATGGAGTTCTCCTCCAGGAAGGGCTTTTTGCTTCCATAACTCTGTTTCTGCTTGGGACATTTCTGATGATGGTTTTGTCATCGTTCTCGATACCGGGCGAAGCTATGAAGGGGACGTTGGCTGCCATTGTTGCTTGCTTTTTGATTAGTGATTGTGCAGTAGCTTGCAGTTAA

Protein sequence

MKDGKSIKVNSQFQHQNGHLPPFKLAKLFDPEASWDKDQLGDVLHWMRQSVAFVCGLLWGSIPLVGGVWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLGTFLMMVLSSFSIPGEAMKGTLAAIVACFLISDCAVACS

Homology

[Close]

BLAST of Spg005908 vs. NCBI nr
Match: KAA0067751.1 (Rab5-interacting [Cucumis melo var. makuwa] >TYJ97393.1 Rab5-interacting [Cucumis melo var. makuwa])

HSP 1 Score: 260.0 bits (663), Expect = 1.3e-65
Identity = 128/152 (84.21%), Postives = 137/152 (90.13%), Query Frame = 0


Query: 1   MKDGKSIKVNSQFQHQNGHLPPFKLAKLFDPEASWDKDQLGDVLHWMRQSVAFVCGLLWG 60
           MKDGK++KVNSQ QHQNGHLPPFKLA+LFDPE SWDKDQLGDVLHWMRQSVA VCGLLWG
Sbjct: 1   MKDGKTMKVNSQLQHQNGHLPPFKLARLFDPETSWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SIPLVGGVWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLGTFL 120
           SIPLVGG+WFILFLVISTTM+YGYYAMILKVDEEEFGGHGVLLQEGLFAS+TLFLLGT L
Sbjct: 61  SIPLVGGIWFILFLVISTTMIYGYYAMILKVDEEEFGGHGVLLQEGLFASVTLFLLGTLL 120

Query: 121 MMVLSSFSIPGEAMKGTLAAIVACFLISDCAV 153
            MVLS+FS   +A    L AIVAC  IS+CAV
Sbjct: 121 TMVLSTFSKSAKASVERLVAIVACSFISECAV 152

[Close]

BLAST of Spg005908 vs. NCBI nr
Match: XP_022948613.1 (uncharacterized protein C20orf24 homolog [Cucurbita moschata] >XP_023523192.1 uncharacterized protein C20orf24 homolog [Cucurbita pepo subsp. pepo] >KAG6607251.1 Respirasome Complex Assembly Factor 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036935.1 hypothetical protein SDJN02_00555 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 232.3 bits (591), Expect = 2.9e-57
Identity = 114/127 (89.76%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   MKDGKSIKVNSQFQHQNGHLPPFKLAKLFDPEASWDKDQLGDVLHWMRQSVAFVCGLLWG 60
           MKDGKSIKVNSQ QHQNGHLPPFKLA LFDPEASWDKDQLGDVLHWMRQSVA VCGLLWG
Sbjct: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SIPLVGGVWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLGTFL 120
           S+PLVGG+WFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLL   L
Sbjct: 61  SVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120

Query: 121 MMVLSSF 128
           +  L  F
Sbjct: 121 VYSLGHF 127

[Close]

BLAST of Spg005908 vs. NCBI nr
Match: XP_038895585.1 (respirasome Complex Assembly Factor 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 231.1 bits (588), Expect = 6.5e-57
Identity = 114/127 (89.76%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MKDGKSIKVNSQFQHQNGHLPPFKLAKLFDPEASWDKDQLGDVLHWMRQSVAFVCGLLWG 60
           MKDGKS KVNSQ QHQNGHLPPFKLAKLFDPE SWDKDQLGDVLHWMRQSVA VCGLLWG
Sbjct: 1   MKDGKSTKVNSQLQHQNGHLPPFKLAKLFDPETSWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SIPLVGGVWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLGTFL 120
           SIPLVGG+WFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLL   L
Sbjct: 61  SIPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120

Query: 121 MMVLSSF 128
           +  L  F
Sbjct: 121 IYSLGHF 127

[Close]

BLAST of Spg005908 vs. NCBI nr
Match: XP_022998338.1 (uncharacterized protein C20orf24 homolog [Cucurbita maxima])

HSP 1 Score: 231.1 bits (588), Expect = 6.5e-57
Identity = 113/127 (88.98%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   MKDGKSIKVNSQFQHQNGHLPPFKLAKLFDPEASWDKDQLGDVLHWMRQSVAFVCGLLWG 60
           MKDGKSIKVNSQ QHQNGHLPPFKLA LFDPEASWDKDQLGDVLHWMRQSVA VCGLLWG
Sbjct: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SIPLVGGVWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLGTFL 120
           S+PLVGG+WFI+FLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLL   L
Sbjct: 61  SVPLVGGIWFIVFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120

Query: 121 MMVLSSF 128
           +  L  F
Sbjct: 121 VYSLGHF 127

[Close]

BLAST of Spg005908 vs. NCBI nr
Match: XP_008457469.1 (PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo])

HSP 1 Score: 228.8 bits (582), Expect = 3.2e-56
Identity = 110/127 (86.61%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   MKDGKSIKVNSQFQHQNGHLPPFKLAKLFDPEASWDKDQLGDVLHWMRQSVAFVCGLLWG 60
           MKDGK++KVNSQ QHQNGHLPPFKLA+LFDPE SWDKDQLGDVLHWMRQSVA VCGLLWG
Sbjct: 1   MKDGKTMKVNSQLQHQNGHLPPFKLARLFDPETSWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SIPLVGGVWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLGTFL 120
           SIPLVGG+WFILFLVISTTM+YGYYAMILKVDEEEFGGHGVLLQEGLFAS+TLFLL   L
Sbjct: 61  SIPLVGGIWFILFLVISTTMIYGYYAMILKVDEEEFGGHGVLLQEGLFASVTLFLLMWTL 120

Query: 121 MMVLSSF 128
           +  L  F
Sbjct: 121 IYSLGHF 127

[Close]

BLAST of Spg005908 vs. ExPASy Swiss-Prot
Match: Q9CQT9 (Respirasome Complex Assembly Factor 1 OS=Mus musculus OX=10090 GN=Rab5if PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.4e-14
Identity = 43/117 (36.75%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 1   MKDGKSIKVNSQFQHQNGHLPPFKLAKLFDPEASW-DKDQLGDVLHWMRQSVAFVCGLLW 60
           M  G+  +   Q Q  NG L     +K+   +A+W DKD+  DV++W RQ +A V G++W
Sbjct: 1   MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWDDKDEFLDVIYWFRQIIALVLGVIW 60

Query: 61  GSIPLVGGVWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLL 117
           G +PL G +    F +I+  ++Y Y++  L++DEEE+GG   L +EG   S  LF++
Sbjct: 61  GVLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMV 117

[Close]

BLAST of Spg005908 vs. ExPASy Swiss-Prot
Match: Q9BUV8 (Respirasome Complex Assembly Factor 1 OS=Homo sapiens OX=9606 GN=RAB5IF PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.2e-14
Identity = 43/117 (36.75%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 1   MKDGKSIKVNSQFQHQNGHLPPFKLAKLFDPEASW-DKDQLGDVLHWMRQSVAFVCGLLW 60
           M  G+  +   Q Q  NG L     +K+   +A+W DKD+  DV++W RQ +A V G++W
Sbjct: 1   MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIW 60

Query: 61  GSIPLVGGVWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLL 117
           G +PL G +    F +I+  ++Y Y++  L++DEEE+GG   L +EG   S  LF++
Sbjct: 61  GVLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMV 117

[Close]

BLAST of Spg005908 vs. ExPASy TrEMBL
Match: A0A5A7VQ84 (Rab5-interacting OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002120 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 6.3e-66
Identity = 128/152 (84.21%), Postives = 137/152 (90.13%), Query Frame = 0


Query: 1   MKDGKSIKVNSQFQHQNGHLPPFKLAKLFDPEASWDKDQLGDVLHWMRQSVAFVCGLLWG 60
           MKDGK++KVNSQ QHQNGHLPPFKLA+LFDPE SWDKDQLGDVLHWMRQSVA VCGLLWG
Sbjct: 1   MKDGKTMKVNSQLQHQNGHLPPFKLARLFDPETSWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SIPLVGGVWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLGTFL 120
           SIPLVGG+WFILFLVISTTM+YGYYAMILKVDEEEFGGHGVLLQEGLFAS+TLFLLGT L
Sbjct: 61  SIPLVGGIWFILFLVISTTMIYGYYAMILKVDEEEFGGHGVLLQEGLFASVTLFLLGTLL 120

Query: 121 MMVLSSFSIPGEAMKGTLAAIVACFLISDCAV 153
            MVLS+FS   +A    L AIVAC  IS+CAV
Sbjct: 121 TMVLSTFSKSAKASVERLVAIVACSFISECAV 152

[Close]

BLAST of Spg005908 vs. ExPASy TrEMBL
Match: A0A6J1G9S8 (uncharacterized protein C20orf24 homolog OS=Cucurbita moschata OX=3662 GN=LOC111452238 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.4e-57
Identity = 114/127 (89.76%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   MKDGKSIKVNSQFQHQNGHLPPFKLAKLFDPEASWDKDQLGDVLHWMRQSVAFVCGLLWG 60
           MKDGKSIKVNSQ QHQNGHLPPFKLA LFDPEASWDKDQLGDVLHWMRQSVA VCGLLWG
Sbjct: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SIPLVGGVWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLGTFL 120
           S+PLVGG+WFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLL   L
Sbjct: 61  SVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120

Query: 121 MMVLSSF 128
           +  L  F
Sbjct: 121 VYSLGHF 127

[Close]

BLAST of Spg005908 vs. ExPASy TrEMBL
Match: A0A6J1KGG2 (uncharacterized protein C20orf24 homolog OS=Cucurbita maxima OX=3661 GN=LOC111493006 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.1e-57
Identity = 113/127 (88.98%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   MKDGKSIKVNSQFQHQNGHLPPFKLAKLFDPEASWDKDQLGDVLHWMRQSVAFVCGLLWG 60
           MKDGKSIKVNSQ QHQNGHLPPFKLA LFDPEASWDKDQLGDVLHWMRQSVA VCGLLWG
Sbjct: 1   MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SIPLVGGVWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLGTFL 120
           S+PLVGG+WFI+FLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLL   L
Sbjct: 61  SVPLVGGIWFIVFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120

Query: 121 MMVLSSF 128
           +  L  F
Sbjct: 121 VYSLGHF 127

[Close]

BLAST of Spg005908 vs. ExPASy TrEMBL
Match: A0A1S3C692 (uncharacterized protein C20orf24 homolog OS=Cucumis melo OX=3656 GN=LOC103497150 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.6e-56
Identity = 110/127 (86.61%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   MKDGKSIKVNSQFQHQNGHLPPFKLAKLFDPEASWDKDQLGDVLHWMRQSVAFVCGLLWG 60
           MKDGK++KVNSQ QHQNGHLPPFKLA+LFDPE SWDKDQLGDVLHWMRQSVA VCGLLWG
Sbjct: 1   MKDGKTMKVNSQLQHQNGHLPPFKLARLFDPETSWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SIPLVGGVWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLGTFL 120
           SIPLVGG+WFILFLVISTTM+YGYYAMILKVDEEEFGGHGVLLQEGLFAS+TLFLL   L
Sbjct: 61  SIPLVGGIWFILFLVISTTMIYGYYAMILKVDEEEFGGHGVLLQEGLFASVTLFLLMWTL 120

Query: 121 MMVLSSF 128
           +  L  F
Sbjct: 121 IYSLGHF 127

[Close]

BLAST of Spg005908 vs. ExPASy TrEMBL
Match: A0A0A0LY22 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G523070 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.9e-55
Identity = 113/127 (88.98%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MKDGKSIKVNSQFQHQNGHLPPFKLAKLFDPEASWDKDQLGDVLHWMRQSVAFVCGLLWG 60
           MKDGKS+KVNSQ Q QNGHLPPFKLAKLFDPE SWDKDQLGDVLHWMRQSVA VCGLLWG
Sbjct: 1   MKDGKSMKVNSQLQ-QNGHLPPFKLAKLFDPETSWDKDQLGDVLHWMRQSVALVCGLLWG 60

Query: 61  SIPLVGGVWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLGTFL 120
           SIPLVGGVWFILFLVISTTM+YGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLL   L
Sbjct: 61  SIPLVGGVWFILFLVISTTMIYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLMWTL 120

Query: 121 MMVLSSF 128
           +  L  F
Sbjct: 121 IYSLGHF 126

[Close]

BLAST of Spg005908 vs. TAIR 10
Match: AT5G59410.1 (Rab5-interacting family protein )

HSP 1 Score: 185.3 bits (469), Expect = 3.8e-47
Identity = 92/130 (70.77%), Postives = 104/130 (80.00%), Query Frame = 0


Query: 1   MKDGKSIKVN---SQFQHQNGHLPPFKLAKLFDPEASWDKDQLGDVLHWMRQSVAFVCGL 60
           MK+ KS K+N    Q  HQN HL P KLAKLFDP+ASWDKDQLGDVLHW+RQ V  + GL
Sbjct: 1   MKESKSAKLNQLQQQENHQNAHLSPSKLAKLFDPDASWDKDQLGDVLHWIRQVVGLISGL 60

Query: 61  LWGSIPLVGGVWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLFLLG 120
           LWGSIPLVGG+W ILFL IS+ +VYGYYAMILKVDEE+FGGH  LLQEGLFAS+TLFLL 
Sbjct: 61  LWGSIPLVGGIWIILFLAISSGIVYGYYAMILKVDEEDFGGHAALLQEGLFASLTLFLLA 120

Query: 121 TFLMMVLSSF 128
             L+  L+ F
Sbjct: 121 WILVYSLAHF 130

[Close]

BLAST of Spg005908 vs. TAIR 10
Match: AT2G29020.1 (Rab5-interacting family protein )

HSP 1 Score: 179.1 bits (453), Expect = 2.7e-45
Identity = 87/133 (65.41%), Postives = 104/133 (78.20%), Query Frame = 0


Query: 1   MKDGKSIKVNS------QFQHQNGHLPPFKLAKLFDPEASWDKDQLGDVLHWMRQSVAFV 60
           MK+GKS K +S      Q  HQN HL  F  AKLFD EASWDKDQLGDVLHW+RQ V  +
Sbjct: 1   MKEGKSSKSSSQQEQHEQIYHQNSHLGSFNFAKLFDSEASWDKDQLGDVLHWIRQVVGLL 60

Query: 61  CGLLWGSIPLVGGVWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFASITLF 120
           CGLLWG+IPLVGG+W +LFL IS+ +VYGYYA++LK+DEE+FGGH  LLQ+GLFAS++LF
Sbjct: 61  CGLLWGAIPLVGGIWLLLFLAISSGIVYGYYALVLKIDEEDFGGHAALLQDGLFASLSLF 120

Query: 121 LLGTFLMMVLSSF 128
           LL   L+  LSSF
Sbjct: 121 LLAWILVYSLSSF 133

The following BLAST results are available for this feature:

BLAST of Spg005908 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067751.1	1.3e-65	84.21	Rab5-interacting [Cucumis melo var. makuwa] >TYJ97393.1 Rab5-interacting [Cucumi...	[more]
XP_022948613.1	2.9e-57	89.76	uncharacterized protein C20orf24 homolog [Cucurbita moschata] >XP_023523192.1 un...	[more]
XP_038895585.1	6.5e-57	89.76	respirasome Complex Assembly Factor 1-like isoform X2 [Benincasa hispida]	[more]
XP_022998338.1	6.5e-57	88.98	uncharacterized protein C20orf24 homolog [Cucurbita maxima]	[more]
XP_008457469.1	3.2e-56	86.61	PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo]	[more]

BLAST of Spg005908 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CQT9	2.4e-14	36.75	Respirasome Complex Assembly Factor 1 OS=Mus musculus OX=10090 GN=Rab5if PE=1 SV...	[more]
Q9BUV8	3.2e-14	36.75	Respirasome Complex Assembly Factor 1 OS=Homo sapiens OX=9606 GN=RAB5IF PE=1 SV=...	[more]

BLAST of Spg005908 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VQ84	6.3e-66	84.21	Rab5-interacting OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002...	[more]
A0A6J1G9S8	1.4e-57	89.76	uncharacterized protein C20orf24 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1KGG2	3.1e-57	88.98	uncharacterized protein C20orf24 homolog OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A1S3C692	1.6e-56	86.61	uncharacterized protein C20orf24 homolog OS=Cucumis melo OX=3656 GN=LOC103497150...	[more]
A0A0A0LY22	2.9e-55	88.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G523070 PE=4 SV=1	[more]

BLAST of Spg005908 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59410.1	3.8e-47	70.77	Rab5-interacting family protein	[more]
AT2G29020.1	2.7e-45	65.41	Rab5-interacting family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029008	Rab5-interacting protein family	PFAM	PF07019	Rab5ip	coord: 43..117 e-value: 1.3E-9 score: 38.4
IPR010742	Rab5-interacting protein	PANTHER	PTHR12906	PROTEIN C20ORF24 RAB5-INTERACTING PROTEIN	coord: 1..127
None	No IPR available	PANTHER	PTHR12906:SF2	BNAA04G16800D PROTEIN	coord: 1..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005908.1	Spg005908.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006996	organelle organization
cellular_component	GO:0016021	integral component of membrane