Spg005887 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg005887
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionnudC domain-containing protein 2-like
Locationscaffold11: 1055951 .. 1063163 (-)
RNA-Seq ExpressionSpg005887
SyntenySpg005887
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGGTAGATCTTCTCATCAAACCGCTTCATGGTTTACCAAGTTTGACTGAATTTATCATTATATGAAGGTAAATCTTTGCATCGTAGAGTTTGGAAGGTGGTTTGGTGTGCGGTTATTTATCATCTTTGGGAGGTGTGTAACCTTTTGTTTTCATGGTTCCCGTTCTTGTTCTTCTCAGACTTTGATTCAGGTGGTGAGGTCAGATATCTTCTTTAATGTTCATCTTGGCCAAGTGTGCTAAGTGCTAGTGTGGCGATAATGTTTCCTTCCAATGGGACATTTTTTGTTGAGTCTTTTTGTTTCTTCGACTTCGCTTGTGTCTGTTTTGGTCCTTGTTTGTGCTTTGACCTCGAGCTGTGAGGTATTCCTGGTTGTTTTGTAATATATTACCTTTGCAGAAAATCTTGGCTTTATTTAAATATATTTTGATATATCTTTTTTTTTTTTTTTTTTTTTGAGTGGAAAAACCCTTTTTTGAAAATAGTTTCAAACAATTCCCCTCAAGAACTTGCTTCTTGGGTTCAAAGCGCAAATATGTAAAAGATTAGGGGCCGGTTCAGGAATAATATCTGATGCTTTCACCAGAAGCTTCGGTAGACCGGAACTTCTCGTTAGAGAAAAACAAAGCAAAGGAAAAGGAAAAGCTTTCGTGAAATTCGCGGGAAAGGGGAAGAAGCAAACCCTAAGCAATGGCTGAGAAATTGGCTCCAGACAAGCGCCATAGCTTCCTCCACAACGGTATTCTCTTTCTCTTCATCAATTTGATATTCAGAATTTTCAATTTGAACGAATGAATTCGCTGTTGTACGAGTGGTTTGACATTTGTGCTCGCTTGCACGTGGTTTTTCAGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTACATTAATTTGCCTCCAAATGTTCATTCCAAGCAATTCTACTGCAAGATTCAGTCTAGGCATGTCGAGGTTGGCATCAAGGGGAATCCTCCTTATCTCAATGTCGGTATCACTCTCTTTCTTGCTCGCTCGATTTAATTTTGAAATTTTGACATACTGCTTCGTTTATGATCGTACCGATTGCTTTCAATTATTGATTTGCAGCACGAGCTTACTTGCCCTGTGAAGATGGATTCGTCTTTCTGGACGCTAGGTAATTGGAAATTCTTGCTTTAATGACTAAAAGGGATTTCTAGGTGGTTGAGTGTTGTACTTTTAGGCCAGATAAATTTGATGGGACTGAACTTGAGGAAAATATAATTGTTAAATGAGCCAGATTATATTGCCTTCTATTTTTATCTTCCCCTTATGATTGCTCCACTTTTGACTATGTTGTGATGTAATTGTTTTGTTCGAGCAGAGGATGACATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCCATACAGGGTCAGGGTCAACTTGATCCTTACTCCACTGATCTTGAGCAGAAGCGTCTTATGCTCCAGAGGTTTCAAGAGGAGGTCAGGGTTTTTTTTTTTCCTCGAGCATTTCTTACCATTTTTAATCAGAGATCAATTGTTTCAAGTTGTCAAAATAGATTTTTCATTCTACGGGGCTAGGATCATGGCGGTTTCCATTGTTTGGATTGTTGGCGCTCATTATTTGGAGATTTTATTTTAATGAGTAAACAGTTCGTGCGATGTTATGATGACTGCTTGATTTTGATATCTGAAACGAGGCTAATGTGCCTTGTCATAAGTATGAGAGAGAGAGAGGCTAACGTGTCTGGAAAATCATGACATTGATTCACGTTGTTACAGTGCCCTATGAGAAAAACAGGAAAAGCTTCCTATAAATGTGAATAACTTGACAGTTTTGCAATCTAGACTTGGTGGACTGAGTTGCACCAGTGGTTATAAATGTAAATTGGACAGGCAGTTAATTAATCAATTATTCCAGCAGCCACAAGTAGGAAATAGCATTATTCTTCCTATAGTCTAGCCGAGAGGGTGGGGGTGATACTATGGATTGACTTAGTTACAAGTGTCGTGTAAATAATAAAGGGCCTAGAGGGAATAAGTTCAAGCTATGATTGCAAACTACTTAGGATTTAATATCCTACAAGTTTTCTTGGCAACAAGATGTAGTAGGGTTAAACAGTTGTCTTATAAGAATGAGGTGCTGCAAACTAGCCTAGACACTCACGGATATAAAAGAAAAAAACCCTGCCATTCTCATGAAATGCATTGCATCCTCCTCTCCTCCATAAAAAACTTCTTCTCTAGACTCAAACATGAGTTCTTCAACTTCGATCTTAACTGATGTAGGGTAGATGAACCCTTTCTTCCAAATTTACAACTGACAAGAGAGGGAAATTTACAACTGACAAGAGAGGGCAGGTCTATCTCATACATAACTTAGGATTACGCTAGAGAGCACACTCAGCAAGTCTATTTTGTTTGATTTCATCTCTTTGTAGATTTCTTTTAAATGGTCAATTAGGCGCATCCAACAAGAGGTGAAAAAACTACCAACCCAGTAGGCTAACTCTTTTTCCTTCAAGGCACTCCCAAGATGACTTGAACATGTGATGAGCTCTTGTACCAACTGATGTAGCACAAATGAACCAATTTTTCCAAAGCGGCAGTTGATAGGACTTAGGAGAGAGCCCAATTATTCCTATACTTCATCCATGACCAAGCTCAAGAGTCCCCCTGCAAGGCTACTCCATTTGGAGCCTGTCCTTGGAGGTAACCTATAGAACCCAATCGAGTTAAAGGAAAAACTCTAGTAAGTCCATCCTCAAGTTCAAGGGATGGCCCTGTATCACTTGTTTTTGTTGTACTTCAAATTCCATGCTTTTGTATTTTTAAGCTTTTGAATTTTTGTTGGATGGGATAGGAGTAATTGGGTTGCATTCAACCATTGCATATGAAGTTTCTTGTCCGATTCTGGTTGAGTCACTACAAATGCTATCCACTCTGAATATCACATAAACACACACAGTGAGAGAGAGTTCATTAACTATGGATAGGGGAGTTGTAGGATTTTTTTTTTTTTTGAATGAATAACCATGTTTTCATTGAGAAAAAATGAAAGAATACAGGGGCGACAAACAATCAGCCCACCAAAAAAAGAGGGAGACCCCATTAGATAAAAGGGCTCCAATCCAAAATAATAAGACCTATGGAATAATTACAAAATAAACACGTCACTGACGTCCAAAGAGAAACGTTATAGGATTCTTGTTACTAAACTTTTATTGGGTGCTGGTTTTATATATCCTCAGGTGGCAGTGTTGTACTGCCTCTGTATGGCCTACTTGATATCTTGGAAATACATGAACTTCTTTCCTTTTCTACATAATTTCACTAGTCTTGAGTCATGTGTCAGTCATGTAATGAAATCTTGAAATTTAATCTGCATTATTTCTCTGCAGAACCCTGGATTTGACTTTTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGACCTTCATGGGTGGAATTCGCTCAGATTGACAAATACAGTATGTGGCATTTATAACTTGCATGGGCGTGACATTCTACTAATGCTTGGTAAATAGTGTAGATTTTCTCCTGGTCTTGATTTATGCAATCCCTGTAATAATTGCTATTATGGAAGGGAAATTTGCTGAGTCTTCGTGCAATCGCTGAAATGAAGTGAAAACATTTAGTTGATATATATTTAACTACCAAATATTTTGTATTATAAGTTTTTAATCTTCTATTTGGTTTGATAGAAACAAAACTAATTCCTAGAGCTCCAACTTTGATAGCAGATGCAACTTGCAAGTTCGTGGTAAAAGTATCAACTGATATCAACATTCTCTATGTTAGTTTGCCTAGATCCCAATAAAATATGTTACAAAGGGACCTATTTGGTTTAAATTCTCCTCTAAATTATGTTCCGAGTACGATTGAGATCCTGTTTAGAGTTCTAGTTCATGCGTAACAGCTCATGTTGAATGCCCAAAGTGGATGAAAACATTTTGCTGCTGAGGCCTATCTTGTTGGCGTTGGCTGCTATTTTCCCTTAAGCGAAATGAAGAGATTTCTTTTGCCGGTTGCCACCTCTTACGGTTCCTCCATTCCTTTGAGTAATAGAAAATAAAAAGGGTTGGAATTAGAAAAAGGAAATGCTGTGGCGACGGTTGTGAATGCAGTTGGTTGGAACCCCATTCAGAAGTGCTGAATTGAGGTGGTATCCGATTCCTAACCATTGTGTCATGGCCATTCATTAATATTCTCCATTTTTTTTGCCTTTGCTTTCAGATTCCCACCTCTCAAAGGATGGACGACAACTCCACCAGGTATGTAATTTGTAATATTCTGCTTTCAGAGCCTCTTTTTGAGGCTCTTAGTGTATCTTGTTACCTTTGAGAGTCCCGATAAAATGTAAACCGGATTAAACTACCATGAGTTGATCTATGATTAAAAAGGATCATGTAAATAATGAATGATTTACGCCCTATTTGTTCACGGTTTCACCCAATATCACATGGGTTTTTGTTTGGAAAATTATTACCCAGGTTCGTTAGATGGATTTTGATTTTTAAAATCAGGATATTAATTATCTTTGGTTTAAAAAATCCTGCTCAACATGGGTTTTCATTATCCTTTGAGAAGATCATTTTTTTTTCCTGGGACATTAATATTGGGCGGCTGCATGAGAGAAGAAAAATTTAGGTTAAATTATAGATCTAGTCCTTGAACTTTCAAGTTTGTATCTATTTGGTCTTTGAACTTTAAAAATGTTTAATAGGTCCCTAAATTTTCAATCTTGTATCTAATAGGTCTTTGATGTATTCGAGACTTAAAAATTAACCGACCTATTAGATATAAAATTGAATGTTATGCCTAATGGAACCCTAAACTTTTAATTTTGTGTCTAGTAGGCGTGAATTTTAAAAAGTGTTGAATAGGTCAAAGATCTATTAGACACAAAATTGAAAGTTGAAGGATTTATTGGACACAAAAGTGAAAATTTGAGGATTTATTTGATACTTACCAAAATTCATGACTCTATTGGACACAAAATTGAAAGTTGAATGACTTATTTGACATTTTTTAAAGTTGGACCAAAAAGAGTAAACCTAATTACCTTTAATACTTAGTTACATATTGGTGGGTAGATATCTTCCTATGCAACTACTAAAATGTCGGCAACTAGATGAGAAATATTTTCTCATTTTCTACTTTTCTCCCTTTTGTTAAAATTTTAATATGGTATATAGGAAGATTCCTACCTGCTCTCTATTGCTGGGTGGGTGGTGTTCTGATGTGGCTTCATTTCATGCGACTTGAATGTCAACTATGTCAGTACTTTTCTTTTTCCTATTTATTGAATTAGGACCAGGGCTTTGAAGAACATTGTGGACCAATGTGGATGTTGGTGATCTCGTGGACTAATAAATTAAGATTTTTTTTTTTTTTTTTAAAAAAGACTAACTAAGAAGATGATGGTTAAAAATATAAGTTTAGTAAATGGACTCTCAGGTTTGCATCTATTTGGTATGTGTCTAATAGGTCTCTAAATTTTTATTTTTATATGATCTAATAGATCTTTGAACATTAAAATTTTCTAATTGATCTCATAACTTTCAAGTTCGTCGCTAATAATACATTGTTATATTAAAAAATTTTAAAAATCAGTTGAGCTCTACATAATTTTATGTCTAAAGAGATCTTACACCTTCAATTTTATATCTAGTATTGAATGAGTCAAGGACTTATTAGACACAAAATTGAAAATTCTAGGACTTGTTGAGCACAAAATCTAAGTTTTAGGAATTTATTAGATATTTTTTAGGGAAATTGTGCCAAATGACTACAAAAATAAAGCATTATTGATTTTTGGCTACGGAAGTTCGGATTTTGTAGGCGTGGCTACCAAAATTTTAGGAACCGTTTCCTGGCTTTTTTTTGGACGTTTTTACCCCTGGTATATACGATTATATACAAACGCCGTTAACAGTCTTTTTTGTTGCAAACGTCCCCTTTTTGCGTGGTGGATGGATCCTTACTTACATGGGATCGGTTGGTGGTTTGTTTTGATCCTGATTTACCTATTTTTCAGGCTTAGGCTTTCTAACGGTAAAAAATCATCTTTTTCAGCGACATGAAGCAGTCAACAGATGGATTACCCAAAAAAAAACATCAAACAATTCCATAGTTGTATGTAACAGTTCAATCTACACAGACAACAAACGTACAATATCATAGATGTATATATTAATACATACACGTTCACAGACAGACAATGGAGGGTATATAACTGTTCAAACACACGTACGTACGAGCATATATGTATATAGATGTACGAGATAGTAGTTGCACATATCAGTATATAAATGTATGAAATCATGGATGTATATACTAATACATACACGTTCATAGGCAGACAACGTACACAGGCTTGCCAATACATATATTGTAAGGTGCAGATGGGTATATAACTCCTCTCACACACTTTCCAGAGGAGTTTGCAACAATGATGGAATAGTATTTATCAGTACATACCGCTCTGGTGGGTTCGACCTCCTCACTTTCATCCCTTTTTGTCCGTCTGTCCTTCCCTTTGGGTCTCTTCGCATCCTAGATGTTAATTAGGGAGTTTAATTCTCTAATTTGTAATTCACAAGGGGGATGATGTGGGTGATCTTTTTTACCTTTTTGTCTACCGTTTTCTTTTTCTTGCTATCTCCTTCGTCTCCACTATCGCTTGAGGAGTAATCATCTTCAATAGAATGGTTTTCCCCCGTATCGGCGCTTGCGTCAACTTCTTCCTGTTTTTTAACACAATTACACGAGTAATTACAGCATGTTTTACACAACCTAAAGAGTAAATACAAAGTCTTACCTCCACGGGTTTAGTCTTTTTTGGTCTCTACATACAATAGAGCGTAATATTCTCAGATTGCATGAAAGAAACAAAATCCCTAAAATCTCGGGGGAATGTATCAGTTTGTTGCTAATATAAGGGAATGGGAATGAAGCCTTTACCTTAGTTTGAATTTTTGAGAAATTGTACAGTCCTCGCGCAGAAGGAGAATCGATGGAGGATGTGGGGCGAGCAGGAGTCTCGACGGCGCAGCGGAAGAAGGTCGCCGGCACGGCGGATGTGGGTCGTCGGCGCGATGCGAGAGGTAGGGATTGGTATACACTCTGTGTTGGGGGTGGAAAATGGTGGGAAATGGAGGATTAA

mRNA sequence

ATGGCTGAGAAATTGGCTCCAGACAAGCGCCATAGCTTCCTCCACAACGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTACATTAATTTGCCTCCAAATGTTCATTCCAAGCAATTCTACTGCAAGATTCAGTCTAGGCATGTCGAGCACGAGCTTACTTGCCCTGTGAAGATGGATTCGTCTTTCTGGACGCTAGCAGAGGATGACATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCCATACAGGGTCAGGGTCAACTTGATCCTTACTCCACTGATCTTGAGCAGAAGCGTCTTATGCTCCAGAGAACCCTGGATTTGACTTTTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGACCTTCATGGGTGGAATTCGCTCAGATTGACAAATACAAAACAAAACTAATTCCTAGAGCTCCAACTTTGATAGCAGATGCAACTTGCAAGTTCGTGGTAAAAGTATCAACTGATATCAACATTCTCTATATTCCCACCTCTCAAAGGATGGACGACAACTCCACCAGTCCTCGCGCAGAAGGAGAATCGATGGAGGATGTGGGGCGAGCAGGAGTCTCGACGGCGCAGCGGAAGAAGGTCGCCGGCACGGCGGATGTGGGTCGTCGGCGCGATGCGAGAGGTAGGGATTGGTATACACTCTGTGTTGGGGGTGGAAAATGGTGGGAAATGGAGGATTAA

Coding sequence (CDS)

ATGGCTGAGAAATTGGCTCCAGACAAGCGCCATAGCTTCCTCCACAACGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTACATTAATTTGCCTCCAAATGTTCATTCCAAGCAATTCTACTGCAAGATTCAGTCTAGGCATGTCGAGCACGAGCTTACTTGCCCTGTGAAGATGGATTCGTCTTTCTGGACGCTAGCAGAGGATGACATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCCATACAGGGTCAGGGTCAACTTGATCCTTACTCCACTGATCTTGAGCAGAAGCGTCTTATGCTCCAGAGAACCCTGGATTTGACTTTTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGACCTTCATGGGTGGAATTCGCTCAGATTGACAAATACAAAACAAAACTAATTCCTAGAGCTCCAACTTTGATAGCAGATGCAACTTGCAAGTTCGTGGTAAAAGTATCAACTGATATCAACATTCTCTATATTCCCACCTCTCAAAGGATGGACGACAACTCCACCAGTCCTCGCGCAGAAGGAGAATCGATGGAGGATGTGGGGCGAGCAGGAGTCTCGACGGCGCAGCGGAAGAAGGTCGCCGGCACGGCGGATGTGGGTCGTCGGCGCGATGCGAGAGGTAGGGATTGGTATACACTCTGTGTTGGGGGTGGAAAATGGTGGGAAATGGAGGATTAA

Protein sequence

MAEKLAPDKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVEHELTCPVKMDSSFWTLAEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQKRLMLQRTLDLTFHKLSFRATVLIQGPSWVEFAQIDKYKTKLIPRAPTLIADATCKFVVKVSTDINILYIPTSQRMDDNSTSPRAEGESMEDVGRAGVSTAQRKKVAGTADVGRRRDARGRDWYTLCVGGGKWWEMED
Homology
[Close]
BLAST of Spg005887 vs. NCBI nr
Match: XP_023523270.1 (nudC domain-containing protein 2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.4 bits (690), Expect = 1.5e-68
Identity = 137/166 (82.53%), Postives = 140/166 (84.34%), Query Frame = 0 

Query: 1   MAEKLAPDKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVE----- 60
           MAEKLAP+KRHSFLHNGQ+VFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVE     
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVELGIKG 60

Query: 61  ------HELTCPVKMDSSFWTLAEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQ 120
                 HELTCPVK DSSFWTL ED IMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQ
Sbjct: 61  NPPYLDHELTCPVKTDSSFWTL-EDGIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQ 120

Query: 121 KRLMLQ--------RTLDLTFHKLSFRATVLIQGPSWVEFAQIDKY 148
           KRLMLQ        RTLDLT HKLSFRATV IQGPSWVEF QI+ Y
Sbjct: 121 KRLMLQRFQEEFLCRTLDLTSHKLSFRATVPIQGPSWVEFTQINNY 165

[Close]
BLAST of Spg005887 vs. NCBI nr
Match: XP_038894388.1 (nudC domain-containing protein 2 [Benincasa hispida])

HSP 1 Score: 229.2 bits (583), Expect = 3.9e-56
Identity = 112/127 (88.19%), Postives = 114/127 (89.76%), Query Frame = 0 

Query: 1   MAEKLAPDKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVE----- 60
           MAEKLAP+KRHSFLHNGQKVFEWDQTLE+VNIYINLPPNVHSKQFYCKIQSRHVE     
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEDVNIYINLPPNVHSKQFYCKIQSRHVEVGIKG 60

Query: 61  ------HELTCPVKMDSSFWTLAEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQ 117
                 HELTCPVK DSSFWTL EDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQ
Sbjct: 61  NPPFLNHELTCPVKTDSSFWTL-EDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQ 120

[Close]
BLAST of Spg005887 vs. NCBI nr
Match: XP_022998001.1 (nudC domain-containing protein 2-like [Cucurbita maxima])

HSP 1 Score: 226.9 bits (577), Expect = 2.0e-55
Identity = 111/127 (87.40%), Postives = 113/127 (88.98%), Query Frame = 0 

Query: 1   MAEKLAPDKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVE----- 60
           MAEKLAP+KRHSF+HNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVE     
Sbjct: 1   MAEKLAPEKRHSFIHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVELGIKR 60

Query: 61  ------HELTCPVKMDSSFWTLAEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQ 117
                 HELTCPVK DSSFWTL ED IMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQ
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTL-EDGIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQ 120

[Close]
BLAST of Spg005887 vs. NCBI nr
Match: TYJ97316.1 (nudC domain-containing protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 226.1 bits (575), Expect = 3.3e-55
Identity = 111/127 (87.40%), Postives = 114/127 (89.76%), Query Frame = 0 

Query: 1   MAEKLAPDKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVE----- 60
           MAEKLAP+KRHSFLHNGQKVFEWDQTLEEVNIYINLPPNV+SKQFYCKIQSRHVE     
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  ------HELTCPVKMDSSFWTLAEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQ 117
                 HELTCPVK DSSFWTL EDDIMHITLQKRDKGQTWASPIQGQGQLDPYS+DLEQ
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTL-EDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQ 120

[Close]
BLAST of Spg005887 vs. NCBI nr
Match: XP_023523271.1 (nudC domain-containing protein 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.1 bits (575), Expect = 3.3e-55
Identity = 111/127 (87.40%), Postives = 113/127 (88.98%), Query Frame = 0 

Query: 1   MAEKLAPDKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVE----- 60
           MAEKLAP+KRHSFLHNGQ+VFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVE     
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVELGIKG 60

Query: 61  ------HELTCPVKMDSSFWTLAEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQ 117
                 HELTCPVK DSSFWTL ED IMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQ
Sbjct: 61  NPPYLDHELTCPVKTDSSFWTL-EDGIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQ 120

[Close]
BLAST of Spg005887 vs. ExPASy Swiss-Prot
Match: Q8WVJ2 (NudC domain-containing protein 2 OS=Homo sapiens OX=9606 GN=NUDCD2 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-08
Identity = 35/107 (32.71%), Postives = 53/107 (49.53%), Query Frame = 0 

Query: 22  EWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHV----------EHELTCPVKMDSSFWTL 81
           +W QTLEEV I + +PP   ++   C +QSRHV          + +L      D   WTL
Sbjct: 20  QWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGREILKGKLFDSTIADEGTWTL 79

Query: 82  AEDDIMHITL--QKRDKGQTWASPIQGQGQLDPYSTDLEQKRLMLQR 117
            +  ++ I L   KRD    W S ++ +   DP+  D  Q++L L+R
Sbjct: 80  EDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLER 126

[Close]
BLAST of Spg005887 vs. ExPASy Swiss-Prot
Match: Q9CQ48 (NudC domain-containing protein 2 OS=Mus musculus OX=10090 GN=Nudcd2 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-08
Identity = 35/107 (32.71%), Postives = 53/107 (49.53%), Query Frame = 0 

Query: 22  EWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHV----------EHELTCPVKMDSSFWTL 81
           +W QTLEEV I + +PP   ++   C +QSRHV          + +L      D   WTL
Sbjct: 20  QWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGREILKGKLFDSTIADEGTWTL 79

Query: 82  AEDDIMHITL--QKRDKGQTWASPIQGQGQLDPYSTDLEQKRLMLQR 117
            +  ++ I L   KRD    W S ++ +   DP+  D  Q++L L+R
Sbjct: 80  EDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLER 126

[Close]
BLAST of Spg005887 vs. ExPASy Swiss-Prot
Match: Q5M823 (NudC domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Nudcd2 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-08
Identity = 35/107 (32.71%), Postives = 53/107 (49.53%), Query Frame = 0 

Query: 22  EWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHV----------EHELTCPVKMDSSFWTL 81
           +W QTLEEV I + +PP   ++   C +QSRHV          + +L      D   WTL
Sbjct: 20  QWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGREILKGKLFDSTIADEGTWTL 79

Query: 82  AEDDIMHITL--QKRDKGQTWASPIQGQGQLDPYSTDLEQKRLMLQR 117
            +  ++ I L   KRD    W S ++ +   DP+  D  Q++L L+R
Sbjct: 80  EDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLER 126

[Close]
BLAST of Spg005887 vs. ExPASy Swiss-Prot
Match: O60166 (Nuclear movement protein nudc OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nudc PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-06
Identity = 27/105 (25.71%), Postives = 53/105 (50.48%), Query Frame = 0 

Query: 21  FEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVEHELTCP-------------VKMDSS 80
           +EWDQT+ +V+I I++P    +K     + +  ++ ++  P             + +D S
Sbjct: 11  YEWDQTIADVDIVIHVPKGTRAKSLQVDMSNHDLKIQINVPERKVLLSGPLEKQINLDES 70

Query: 81  FWTLAEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQKRL 113
            WT+ E + + I L+K +K + W+  I+G   +D  S + E  +L
Sbjct: 71  TWTVEEQERLVIHLEKSNKMEWWSCVIKGHPSIDIGSIEPENSKL 115

[Close]
BLAST of Spg005887 vs. ExPASy Swiss-Prot
Match: Q9STN7 (Protein BOBBER 2 OS=Arabidopsis thaliana OX=3702 GN=BOB2 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.9e-06
Identity = 26/103 (25.24%), Postives = 48/103 (46.60%), Query Frame = 0 

Query: 21  FEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRH-----------VEHELTCPVKMDSSFW 80
           + W Q L+EV I I +P    S+   C+I+              V+ E    VK D  FW
Sbjct: 136 YSWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDDCFW 195

Query: 81  TLAEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQKRL 113
            + +  ++ + L K+D+ + W   ++G+ ++D    + E  +L
Sbjct: 196 NIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKL 238

[Close]
BLAST of Spg005887 vs. ExPASy TrEMBL
Match: A0A6J1K923 (nudC domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111492785 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 9.4e-56
Identity = 111/127 (87.40%), Postives = 113/127 (88.98%), Query Frame = 0 

Query: 1   MAEKLAPDKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVE----- 60
           MAEKLAP+KRHSF+HNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVE     
Sbjct: 1   MAEKLAPEKRHSFIHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVELGIKR 60

Query: 61  ------HELTCPVKMDSSFWTLAEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQ 117
                 HELTCPVK DSSFWTL ED IMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQ
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTL-EDGIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQ 120

[Close]
BLAST of Spg005887 vs. ExPASy TrEMBL
Match: A0A5D3BE77 (NudC domain-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001220 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.6e-55
Identity = 111/127 (87.40%), Postives = 114/127 (89.76%), Query Frame = 0 

Query: 1   MAEKLAPDKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVE----- 60
           MAEKLAP+KRHSFLHNGQKVFEWDQTLEEVNIYINLPPNV+SKQFYCKIQSRHVE     
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  ------HELTCPVKMDSSFWTLAEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQ 117
                 HELTCPVK DSSFWTL EDDIMHITLQKRDKGQTWASPIQGQGQLDPYS+DLEQ
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTL-EDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQ 120

[Close]
BLAST of Spg005887 vs. ExPASy TrEMBL
Match: A0A5A7SMF6 (NudC domain-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00610 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.6e-55
Identity = 111/127 (87.40%), Postives = 114/127 (89.76%), Query Frame = 0 

Query: 1   MAEKLAPDKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVE----- 60
           MAEKLAP+KRHSFLHNGQKVFEWDQTLEEVNIYINLPPNV+SKQFYCKIQSRHVE     
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  ------HELTCPVKMDSSFWTLAEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQ 117
                 HELTCPVK DSSFWTL EDDIMHITLQKRDKGQTWASPIQGQGQLDPYS+DLEQ
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTL-EDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQ 120

[Close]
BLAST of Spg005887 vs. ExPASy TrEMBL
Match: A0A1S3C618 (nudC domain-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103497082 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.6e-55
Identity = 111/127 (87.40%), Postives = 114/127 (89.76%), Query Frame = 0 

Query: 1   MAEKLAPDKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVE----- 60
           MAEKLAP+KRHSFLHNGQKVFEWDQTLEEVNIYINLPPNV+SKQFYCKIQSRHVE     
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  ------HELTCPVKMDSSFWTLAEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQ 117
                 HELTCPVK DSSFWTL EDDIMHITLQKRDKGQTWASPIQGQGQLDPYS+DLEQ
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTL-EDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQ 120

[Close]
BLAST of Spg005887 vs. ExPASy TrEMBL
Match: A0A6J1I2V0 (nudC domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111469416 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 3.6e-55
Identity = 110/127 (86.61%), Postives = 112/127 (88.19%), Query Frame = 0 

Query: 1   MAEKLAPDKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVE----- 60
           MAEKLAP+KRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQS HVE     
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60

Query: 61  ------HELTCPVKMDSSFWTLAEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQ 117
                 H LTCPVK DSSFWTL EDDIMHITLQKRDKGQTWASPIQGQGQLDPY+TDLEQ
Sbjct: 61  NPPYLNHHLTCPVKTDSSFWTL-EDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQ 120

[Close]
BLAST of Spg005887 vs. TAIR 10
Match: AT5G58740.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 203.8 bits (517), Expect = 1.6e-52
Identity = 97/127 (76.38%), Postives = 107/127 (84.25%), Query Frame = 0 

Query: 1   MAEKLAPDKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVE----- 60
           MAEKLAP+KRH F+HNGQKVFEWDQTLEEVN+YI LPPNVH K F+CKIQS+H+E     
Sbjct: 1   MAEKLAPEKRHDFIHNGQKVFEWDQTLEEVNMYITLPPNVHPKSFHCKIQSKHIEVGIKG 60

Query: 61  ------HELTCPVKMDSSFWTLAEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQ 117
                 H+L+ PVK D SFWTL EDDIMHITLQKR+KGQTWASPI GQGQLDPY+TDLEQ
Sbjct: 61  NPPYLNHDLSAPVKTDCSFWTL-EDDIMHITLQKREKGQTWASPILGQGQLDPYATDLEQ 120

[Close]
BLAST of Spg005887 vs. TAIR 10
Match: AT4G27890.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 2.8e-07
Identity = 26/103 (25.24%), Postives = 48/103 (46.60%), Query Frame = 0 

Query: 21  FEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRH-----------VEHELTCPVKMDSSFW 80
           + W Q L+EV I I +P    S+   C+I+              V+ E    VK D  FW
Sbjct: 136 YSWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDDCFW 195

Query: 81  TLAEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQKRL 113
            + +  ++ + L K+D+ + W   ++G+ ++D    + E  +L
Sbjct: 196 NIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKL 238

[Close]
BLAST of Spg005887 vs. TAIR 10
Match: AT5G53400.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 8.0e-07
Identity = 25/103 (24.27%), Postives = 48/103 (46.60%), Query Frame = 0 

Query: 21  FEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRH-----------VEHELTCPVKMDSSFW 80
           + W Q L+EV + I +P    ++   C+I+              V+ EL   VK D  +W
Sbjct: 147 YSWIQNLQEVTVNIPVPTGTKARTVVCEIKKNRLKVGLKGQDPIVDGELYRSVKPDDCYW 206

Query: 81  TLAEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQKRL 113
            + +  ++ I L K D+ + W   ++G+ ++D    + E  +L
Sbjct: 207 NIEDQKVISILLTKSDQMEWWKCCVKGEPEIDTQKVEPETSKL 249

The following BLAST results are available for this feature:
BLAST of Spg005887 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023523270.11.5e-6882.53nudC domain-containing protein 2-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_038894388.13.9e-5688.19nudC domain-containing protein 2 [Benincasa hispida][more]
XP_022998001.12.0e-5587.40nudC domain-containing protein 2-like [Cucurbita maxima][more]
TYJ97316.13.3e-5587.40nudC domain-containing protein 2 [Cucumis melo var. makuwa][more]
XP_023523271.13.3e-5587.40nudC domain-containing protein 2-like isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of Spg005887 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8WVJ21.1e-0832.71NudC domain-containing protein 2 OS=Homo sapiens OX=9606 GN=NUDCD2 PE=1 SV=1[more]
Q9CQ481.1e-0832.71NudC domain-containing protein 2 OS=Mus musculus OX=10090 GN=Nudcd2 PE=1 SV=1[more]
Q5M8231.1e-0832.71NudC domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Nudcd2 PE=2 SV... [more]
O601661.0e-0625.71Nuclear movement protein nudc OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
Q9STN73.9e-0625.24Protein BOBBER 2 OS=Arabidopsis thaliana OX=3702 GN=BOB2 PE=2 SV=1[more]
BLAST of Spg005887 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K9239.4e-5687.40nudC domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC11149278... [more]
A0A5D3BE771.6e-5587.40NudC domain-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7SMF61.6e-5587.40NudC domain-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A1S3C6181.6e-5587.40nudC domain-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103497082 PE=4 SV... [more]
A0A6J1I2V03.6e-5586.61nudC domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC11146941... [more]
BLAST of Spg005887 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G58740.11.6e-5276.38HSP20-like chaperones superfamily protein [more]
AT4G27890.12.8e-0725.24HSP20-like chaperones superfamily protein [more]
AT5G53400.18.0e-0724.27HSP20-like chaperones superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007052CS domainPFAMPF04969CScoord: 21..83
e-value: 4.6E-9
score: 37.2
IPR007052CS domainPROSITEPS51203CScoord: 16..94
score: 8.86325
IPR008978HSP20-like chaperoneGENE3D2.60.40.790coord: 16..119
e-value: 8.7E-18
score: 66.6
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 8..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..207
NoneNo IPR availablePANTHERPTHR12356:SF18HSP20-LIKE CHAPERONES SUPERFAMILY PROTEINcoord: 2..130
NoneNo IPR availableCDDcd06467p23_NUDC_likecoord: 21..94
e-value: 5.12511E-23
score: 87.603
IPR037898NudC familyPANTHERPTHR12356NUCLEAR MOVEMENT PROTEIN NUDCcoord: 2..130

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg005887.1Spg005887.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
cellular_component GO:0005737 cytoplasm
molecular_function GO:0051082 unfolded protein binding