Spg005782 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005782
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	U2 small nuclear ribonucleoprotein B
Location	scaffold11: 409806 .. 414122 (+)
RNA-Seq Expression	Spg005782
Synteny	Spg005782

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTTGGAGGGAAGCTTCTTTCCCCGAATGGTTTGGGTTTGTTATTAATGCTCTGGTGGGTACAACTGTTTCCTTGATTTAATGAAGTTTGTTTTTTTTTTTTTTTAAAAAAAGGTCTTCCAATTTTTTCCTCTATAGCAGTTCTTGCATAAGATGAATTTTTTTTTTGAGTATGTAAGATCATTTAAATATATGAATTTTTGATCGAAAATACAAGTTTTATGCCCGTTGAACTATGCTCGTTACCATACTATAAGTCAAAATTATCAAATTATATCATTTAGTGTTGGACCGGGTTAAGGGCCCATTGACGAGGGCTTTGATACCTCAGTTCTTTTGGGCTTGGGTTGAATATTGGAGGCCCATTAGCAAGGCGTTGGATACCGAAACTTGGAGTGGCTAGGGCTCCATCCTGCTTCCGCCGAGTCTCCTTCCTCCTGCACATTTCGAAAACCAGATTTCTGTGTTGCTCCGTCATTTCTCTGTAGGCCGAAGGCGCTGAACGTGAACCACCATGTTATCGGGGGATATACCGCCGAATCAGACCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGGTGACTCACTCTTAGCTTTTCGCTTAAACCTTACTTTATCCCTTGTGTAAATGTGTTTTCTTCTGTTCAGTAAGTAGTTAGCTTAGGATAATTGAAGTGATCTGCGGGGCATTTTATTATTATCATTTCGCCTTTGGCTCTCAAAATTCATGCTACTGTCGCTCTCCGGGGGGGGGGGGGGGGGGAGCGTTACTTGGGCGAAATTTGGTTTGTTTTTGTTACAGTTCTAATATTTCTGATGATGCTACACGGTAATTACTCGAGGATGTAGAACTTTCATAGTTGGCATTTGGTTTTTAGGGTGAAGGAGCTGATAGTGGTAGCTTGAAATTTTAGTTCGGATATGGAAACAGCTACTTGCTTTACCCATCCCGTAGCATTTGGGGTTTTGTTTACTATATCGTTTGCAAAGACCCGTTCGATAACTATTTGGTTTTAATAGAGGGTTGAGAGGCTGAGGCTGGGGATACGCTGCTGGTGCAAAAGTTTGGGTGTAGGGATTTTGAGTGGGAAACAGATTGGGTAAAGCTTGAGGTCGAGGAAACTGAGTAGGATAAAACGGCGGGGCATAAGCTTGCTGGTAAAATGGTTGAGGCTGAGAAATAATCGGAGGTTGCGGAGGTTGAGGCAATGAACGGAGCTGAGACTGAAGTTGCTGGGGCGGTGGGCGGGGCTGATTTTGGTGAGTATTGGGATTCAGAGGTTGATTTGGAGGTTCGGTAGTAGGATTTATCGGCTGGTTTAATGGGGTGACCACTGGAGTAACATTGGGAGAAGCTACTGGTGTGGTTGAAGAAGTTGAGGAGGATGAAGAAGATGATTCCCCAGTTGTCATTGAGAAGGAGCGAGTGGCTCTGATACCATATAAAGTAAGAAATCAGAGATGGATTACTGCTATTCAGAAAAGGCTATTGTTCATACTATTACAAGACCCAGAGCTAGGGTATAAAAACAGAGAAGAAGGACACTTGTCCCAAACCGAGAGGCTGGAGCAAAAAGACCAATACAGACATAAAGAACCAGATAAATATACCAAGAAATAAACCAGATAAATGACCCTCTATTAGGTTTTTGGTTTTTGAAAATTAAGCTTCTAAACACTACTTCCTATGAGTTTCTTGTTACCTACTCATGGCAGATGTTTTCTAAATTCAAGTCAAGTTTTGAGAACTTAAAAATGTAGATTTTAGAAACTTGTTTTTGATTTTGGAGTTTGATGAAGAATTCAAATCTTTCCTTGCAAAAGATGAAACTCATCCTAAAGAAGTTAGGAGGAAACAACTTAATTTTTATAAACCAACAACTTAAAACCAAATGATTATCAAACTTTGACAATATTGCATCACGTGTGGGGTGGGGGATTCCATCCTATGACTTCTTAGTGTTCGGATTTGATGGTATACTAATTTTCTCCTTTTGGACAGAATTGAAGAGGTCCCTTTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGATGTTGTTGCCTTGAAGACACCAAGGCTTCGAGGGCAAGCATGGGTTGCATTCAGTGAAGTGACCGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGATAAACCTATGGTTGGTCTCTAGCTGATCACGTTTTATGAACTTGCTTTTCATAGTCTTTTTTGTGGCGTTTCATCTATAAGGACAGTTCTTGTGCACTTTGATGTTATTTGGGTAGCTGTGGATAGTTTTCTTGTCAACGGGATTGGATCCTGATTATGCTTCAATTCAATGAGTGTTATGTGGAGGGTGTCATGTGAATATCTATACACAATCATACTCAATATTGTGCCAGTTTAGCTGCTTTTAACCCCTGTCTATTGACATTTGTTCTGTCAATGCATGCCCATATTCATTTACTGCTTAAAATGTTGTCATCACTGGATCTTTGATATCGTGTAAACTGCACAAAGGAATTAGTTTCTCCTTCACCTAACCAGAGATGTGTCCATGATTCTGTTGGGAAGAAACGAGTTTTACAATTAATTTTTTTTTTAAATTAGTTATTTTTTTATTTCATCTTGAATTTTTTTGTACTCTTTTTTTGCTCATTCATACAATATTCTGATATTGAATATGTAGATGACTTTCTGTTGCCTATCTCAAAAACATCAAATGACTTTCTCTCTCTATATTTTTTGGCAGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGGTGATTGTAACTATATAAGTATACTCTTTCTAATCGTTTCCTTTAAAATTCGTTGGTGGACCTAATCTTGAAGTTGGCAGATGGACAGTTATAACTTTACCATGAGAAATATATGTTTTCTTAAACTGGTTGGACATAACCTTCCATTTTCTAATTGCATTGCTTTTTAAAAGATCATAAGGTTTTTAAACTGGTCTATGTTCCTTATTTTCTTTAATTTGCTTATTCAGCTGAAAGAAAGCGACGTGCTGAAGAAGCGCACCAATCTGTAATGCCCAATGGAACAACTGCTGAGAATGGAGGTGCAAATGTAAGTTTCTCTTCACTCTTATTTTATTTTTTTTGTGATCTGAAATGTTTATTTTTCTTCTTCATATGAGCTGTATCGTATTAATTGCTACTCTAGAAGTGGTCCTGAGCATAAATTGTATGAGTCTTTTTGGATGGCGTGGTTCTCTGGTTAATTGTTTTTTTCTTCTCATTTGTTTTGAAGACATTGATGTCTATTCCAATTAGATTTCACTTTAGTGCCCCTTAGACCGGGCCATATTAATATATATATTTTTTTCTTTTCATAATTACTTCTGCTAAGAAAGTCTGTTCATTGTGTGCAGCCCACATTCCGTCATGCAAATCCAAGTGCTCCAGAAGCTACTCCAAACAATATACTATTTATTGAGAATTTGCCACATGAAACGTCTAGTATGATGTTGCAAGTACTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCGAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAACTCGACCTTTGTTCTACTGTTAGTTTTATGTAACGCGCAGCAGGTTTATGTTAATTTCGGAGCATATAAATATGAATCGGGAGTTTTTATGTAAAGTTCAAATATCCTCCACCTCCTTGCGAGGATGAAAGAGAATGAAAGAAAGAAAACATTGGGAGGCAGCTCACTGATTCCAGAGGAGGATAAGGATATCAAACCAAGGGACTCGATGAGTTTTGCCCGCAGTGCGAATTCCAGTTTCCAGAGGTAGCAAGTATAGTGTTATGTTAGGTCGTCAAAAAGGAAACAGAAAGAACTATTGAAAGACCTTTTTGAACTGTGTTCATGTGTACTTGTAGTAGTGGAAAACTAGCTTTTGAAAAGAAAACTAGTAGCTGAAATTTAGGAGACAATGTTGATTACATTTTTGCATGAACATTTAGTCCTCGACAATGAAGTGTTGATAATCATTTCTGTCAAAGTCTTAGGGACAGTGCTCTTGGTGCGTGTATTTTCTTCCATTGGTCGATTATGAGCAAGATTTGACCTAAACTTAGTTTGAAAGTTGTGTCTTTTACTGGATCAAATGCGCA

mRNA sequence

ATGGGTTTTGGAGGGAAGCTTCTTTCCCCGAATGGTTTGGGTTTGTTATTAATGCTCTGTTCTTTTGGGCTTGGGTTGAATATTGGAGGCCCATTAGCAAGGCGTTGGATACCGAAACTTGGAGTGGCTAGGGCTCCATCCTGCTTCCGCCGAGCCGAAGGCGCTGAACGTGAACCACCATGTTATCGGGGGATATACCGCCGAATCAGACCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGGTTGCGGAGGTTGAGGCAATGAACGGAGCTGAGACTGAAGTTGCTGGGGCGGTGGGCGGGGCTGATTTTGAATTGAAGAGGTCCCTTTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGATGTTGTTGCCTTGAAGACACCAAGGCTTCGAGGGCAAGCATGGGTTGCATTCAGTGAAGTGACCGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGATAAACCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAGAAAGCGACGTGCTGAAGAAGCGCACCAATCTGTAATGCCCAATGGAACAACTGCTGAGAATGGAGGTGCAAATCCCACATTCCGTCATGCAAATCCAAGTGCTCCAGAAGCTACTCCAAACAATATACTATTTATTGAGAATTTGCCACATGAAACGTCTAGTATGATGTTGCAAGTACTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCGAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

Coding sequence (CDS)

ATGGGTTTTGGAGGGAAGCTTCTTTCCCCGAATGGTTTGGGTTTGTTATTAATGCTCTGTTCTTTTGGGCTTGGGTTGAATATTGGAGGCCCATTAGCAAGGCGTTGGATACCGAAACTTGGAGTGGCTAGGGCTCCATCCTGCTTCCGCCGAGCCGAAGGCGCTGAACGTGAACCACCATGTTATCGGGGGATATACCGCCGAATCAGACCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGGTTGCGGAGGTTGAGGCAATGAACGGAGCTGAGACTGAAGTTGCTGGGGCGGTGGGCGGGGCTGATTTTGAATTGAAGAGGTCCCTTTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGATGTTGTTGCCTTGAAGACACCAAGGCTTCGAGGGCAAGCATGGGTTGCATTCAGTGAAGTGACCGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGATAAACCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAGAAAGCGACGTGCTGAAGAAGCGCACCAATCTGTAATGCCCAATGGAACAACTGCTGAGAATGGAGGTGCAAATCCCACATTCCGTCATGCAAATCCAAGTGCTCCAGAAGCTACTCCAAACAATATACTATTTATTGAGAATTTGCCACATGAAACGTCTAGTATGATGTTGCAAGTACTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCGAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

Protein sequence

MGFGGKLLSPNGLGLLLMLCSFGLGLNIGGPLARRWIPKLGVARAPSCFRRAEGAEREPPCYRGIYRRIRPYTLRISMRRSRKKVAEVEAMNGAETEVAGAVGGADFELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSVMPNGTTAENGGANPTFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

Homology

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BLAST of Spg005782 vs. NCBI nr
Match: XP_022949507.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita maxima] >KAG6607350.1 U2 small nuclear ribonucleoprotein B'', partial [Cucurbita argyrosperma subsp. sororia] >KAG7037025.1 U2 small nuclear ribonucleoprotein B'' [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 394.0 bits (1011), Expect = 1.2e-105
Identity = 201/207 (97.10%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 108 ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 167
           ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI
Sbjct: 25  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 84

Query: 168 QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSVMPNGTTAENGGANPTFR 227
           QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRR EE HQS MPNG TAENGG+N TFR
Sbjct: 85  QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFR 144

Query: 228 HANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV 287
           HANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV
Sbjct: 145 HANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV 204

Query: 288 QSSMAMQALQGFKIDPQHPMAISFAKK 315
           QSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 205 QSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of Spg005782 vs. NCBI nr
Match: XP_023525708.1 (U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023525709.1 U2 small nuclear ribonucleoprotein B'' 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 392.9 bits (1008), Expect = 2.6e-105
Identity = 200/207 (96.62%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 108 ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 167
           ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI
Sbjct: 25  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 84

Query: 168 QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSVMPNGTTAENGGANPTFR 227
           QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRR +E HQS MPNG TAENGG+N TFR
Sbjct: 85  QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRTDETHQSAMPNGATAENGGSNATFR 144

Query: 228 HANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV 287
           HANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV
Sbjct: 145 HANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV 204

Query: 288 QSSMAMQALQGFKIDPQHPMAISFAKK 315
           QSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 205 QSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of Spg005782 vs. NCBI nr
Match: XP_008457301.1 (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo] >KAA0059982.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo var. makuwa] >TYJ97241.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 390.6 bits (1002), Expect = 1.3e-104
Identity = 199/207 (96.14%), Postives = 203/207 (98.07%), Query Frame = 0


Query: 108 ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 167
           ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFY+KPMRI
Sbjct: 25  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRI 84

Query: 168 QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSVMPNGTTAENGGANPTFR 227
           QYAKTKSDCVAKADG+FVPREKKKKQEEKAE+KRRAEEAHQS MPNGTT ENGG+N TFR
Sbjct: 85  QYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRAEEAHQSAMPNGTTTENGGSNATFR 144

Query: 228 HANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV 287
           HANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV
Sbjct: 145 HANPSATEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV 204

Query: 288 QSSMAMQALQGFKIDPQHPMAISFAKK 315
           QSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 205 QSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Spg005782 vs. NCBI nr
Match: XP_004137370.1 (U2 small nuclear ribonucleoprotein B'' 2 [Cucumis sativus] >KGN63915.1 hypothetical protein Csa_013411 [Cucumis sativus])

HSP 1 Score: 389.8 bits (1000), Expect = 2.2e-104
Identity = 198/207 (95.65%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 108 ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 167
           ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFY+KPMRI
Sbjct: 25  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRI 84

Query: 168 QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSVMPNGTTAENGGANPTFR 227
           QYAKTKSDC+AKADGSFVPREKKKKQEEKAE+KRRAEE HQS MPNGTT ENGG+N TFR
Sbjct: 85  QYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRAEETHQSAMPNGTTTENGGSNATFR 144

Query: 228 HANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV 287
           HANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV
Sbjct: 145 HANPSATEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV 204

Query: 288 QSSMAMQALQGFKIDPQHPMAISFAKK 315
           QSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 205 QSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Spg005782 vs. NCBI nr
Match: XP_022154903.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Momordica charantia])

HSP 1 Score: 389.4 bits (999), Expect = 2.9e-104
Identity = 198/207 (95.65%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 108 ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 167
           ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI
Sbjct: 25  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 84

Query: 168 QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSVMPNGTTAENGGANPTFR 227
           QYAK+KSDCVAKADGSFVPREKKKKQEEKAERKRRAE++HQS MPNGTT ENG +N TFR
Sbjct: 85  QYAKSKSDCVAKADGSFVPREKKKKQEEKAERKRRAEDSHQSAMPNGTTTENGSSNATFR 144

Query: 228 HANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV 287
           HANPSAPEA PNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV
Sbjct: 145 HANPSAPEAAPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV 204

Query: 288 QSSMAMQALQGFKIDPQHPMAISFAKK 315
           QSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 205 QSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Spg005782 vs. ExPASy Swiss-Prot
Match: Q8H1S6 (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 5.0e-83
Identity = 161/208 (77.40%), Postives = 179/208 (86.06%), Query Frame = 0


Query: 108 ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 167
           ELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFYDKPMRI
Sbjct: 25  ELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRI 84

Query: 168 QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSVMPNGTTAENGGANPTFR 227
           QYAK+KSD V KA+GSFVP+EKK KQEEK ERKR AEE  Q  MPNG T +NG   P F+
Sbjct: 85  QYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQQPSMPNGATTQNGMPVPPFQ 144

Query: 228 HANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDD 287
              PS  +   PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDD
Sbjct: 145 ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDD 204

Query: 288 VQSSMAMQALQGFKIDPQHPMAISFAKK 315
           VQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 205 VQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of Spg005782 vs. ExPASy Swiss-Prot
Match: O22922 (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' PE=1 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 3.7e-78
Identity = 152/211 (72.04%), Postives = 178/211 (84.36%), Query Frame = 0


Query: 108 ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 167
           ELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FSEVTAA +AVRQMQNFPFYDKPMR+
Sbjct: 25  ELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRL 84

Query: 168 QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSV---MPNGTTAENGGANP 227
           QYAK KSDC+AKA+G+FVP++KK+KQEEK ERKR   +   +      NG +A NG   P
Sbjct: 85  QYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRPNTANGPSANGPSANNGVPAP 144

Query: 228 TFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF 287
           +F+   PS  E   PNNILFI+NLPHET+SMMLQ+LF+QYPGF+E+RMI+AKPGIAFVE+
Sbjct: 145 SFQ---PSGQETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEY 204

Query: 288 EDDVQSSMAMQALQGFKIDPQHPMAISFAKK 315
           EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 205 EDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of Spg005782 vs. ExPASy Swiss-Prot
Match: B8AM21 (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN=OsI_11177 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 9.4e-74
Identity = 153/209 (73.21%), Postives = 169/209 (80.86%), Query Frame = 0


Query: 108 ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 167
           ELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FSE+TAA+NA R +Q F FY K MR+
Sbjct: 25  ELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEITAATNAFRGLQEFDFYGKRMRV 84

Query: 168 QYAKTKSDCVAKADGSFVPREKKKKQEEK-AERKRRAEEAHQSVMPNGTTAENGGANPTF 227
           QYAKTKSDC+A  DGS  P+EK+KKQEEK AE+KRRAEEA QS  PN     NG      
Sbjct: 85  QYAKTKSDCLATEDGSTAPKEKRKKQEEKAAEKKRRAEEAQQS-GPNAAAQSNGTGYQAS 144

Query: 228 RHANPS-APEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFED 287
           R    S  P A PNNILFI+NLP ET+SMMLQ+LFQQYPGFREVRMIEAKPGIAFVE+ED
Sbjct: 145 RLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKPGIAFVEYED 204

Query: 288 DVQSSMAMQALQGFKIDPQHPMAISFAKK 315
           D QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 205 DSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]

BLAST of Spg005782 vs. ExPASy Swiss-Prot
Match: Q10MR0 (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0298800 PE=2 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 2.1e-73
Identity = 152/209 (72.73%), Postives = 169/209 (80.86%), Query Frame = 0


Query: 108 ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 167
           ELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FSE+TAA+NA R +Q F FY K MR+
Sbjct: 25  ELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEITAATNAFRGLQEFDFYGKRMRV 84

Query: 168 QYAKTKSDCVAKADGSFVPREKKKKQEEK-AERKRRAEEAHQSVMPNGTTAENGGANPTF 227
           QYAKT+SDC+A  DGS  P+EK+KKQEEK AE+KRRAEEA QS  PN     NG      
Sbjct: 85  QYAKTRSDCLATEDGSTAPKEKRKKQEEKAAEKKRRAEEAQQS-GPNAAAQSNGTGYQAS 144

Query: 228 RHANPS-APEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFED 287
           R    S  P A PNNILFI+NLP ET+SMMLQ+LFQQYPGFREVRMIEAKPGIAFVE+ED
Sbjct: 145 RLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKPGIAFVEYED 204

Query: 288 DVQSSMAMQALQGFKIDPQHPMAISFAKK 315
           D QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 205 DSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]

BLAST of Spg005782 vs. ExPASy Swiss-Prot
Match: Q39244 (U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 4.2e-58
Identity = 127/219 (57.99%), Postives = 160/219 (73.06%), Query Frame = 0


Query: 108 ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 167
           ELK+SL A+FSQ+G+IL+++A KT + +GQAWV F    +AS A+ +M NFPFYDK MRI
Sbjct: 33  ELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESASTAIAKMNNFPFYDKEMRI 92

Query: 168 QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSV---MP-NGTTAENGGAN 227
           QYAKTKSD VAKADG+FVPREK+K+ EEK   K++ ++ H S    MP N       GA 
Sbjct: 93  QYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHHDSTQMGMPMNSAYPGVYGAA 152

Query: 228 PTFRHA------NPSAPE--ATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAK 287
           P            P+ PE  A PNNILF++NLPHET+ M+LQ+LF QY GF+EVRMIEAK
Sbjct: 153 PPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAK 212

Query: 288 PGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 315
           PGIAFVEF D++QS++AMQ LQGFKI  Q+ M I++AKK
Sbjct: 213 PGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 250

[Close]

BLAST of Spg005782 vs. ExPASy TrEMBL
Match: A0A6J1KA04 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita maxima OX=3661 GN=LOC111493013 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 5.7e-106
Identity = 201/207 (97.10%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 108 ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 167
           ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI
Sbjct: 25  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 84

Query: 168 QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSVMPNGTTAENGGANPTFR 227
           QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRR EE HQS MPNG TAENGG+N TFR
Sbjct: 85  QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFR 144

Query: 228 HANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV 287
           HANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV
Sbjct: 145 HANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV 204

Query: 288 QSSMAMQALQGFKIDPQHPMAISFAKK 315
           QSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 205 QSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Spg005782 vs. ExPASy TrEMBL
Match: A0A6J1GC84 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita moschata OX=3662 GN=LOC111452834 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 5.7e-106
Identity = 201/207 (97.10%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 108 ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 167
           ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI
Sbjct: 25  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 84

Query: 168 QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSVMPNGTTAENGGANPTFR 227
           QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRR EE HQS MPNG TAENGG+N TFR
Sbjct: 85  QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFR 144

Query: 228 HANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV 287
           HANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV
Sbjct: 145 HANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV 204

Query: 288 QSSMAMQALQGFKIDPQHPMAISFAKK 315
           QSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 205 QSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Spg005782 vs. ExPASy TrEMBL
Match: A0A5D3BF51 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00310 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 6.3e-105
Identity = 199/207 (96.14%), Postives = 203/207 (98.07%), Query Frame = 0


Query: 108 ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 167
           ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFY+KPMRI
Sbjct: 25  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRI 84

Query: 168 QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSVMPNGTTAENGGANPTFR 227
           QYAKTKSDCVAKADG+FVPREKKKKQEEKAE+KRRAEEAHQS MPNGTT ENGG+N TFR
Sbjct: 85  QYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRAEEAHQSAMPNGTTTENGGSNATFR 144

Query: 228 HANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV 287
           HANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV
Sbjct: 145 HANPSATEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV 204

Query: 288 QSSMAMQALQGFKIDPQHPMAISFAKK 315
           QSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 205 QSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Spg005782 vs. ExPASy TrEMBL
Match: A0A1S3C564 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC103497024 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 6.3e-105
Identity = 199/207 (96.14%), Postives = 203/207 (98.07%), Query Frame = 0


Query: 108 ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 167
           ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFY+KPMRI
Sbjct: 25  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRI 84

Query: 168 QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSVMPNGTTAENGGANPTFR 227
           QYAKTKSDCVAKADG+FVPREKKKKQEEKAE+KRRAEEAHQS MPNGTT ENGG+N TFR
Sbjct: 85  QYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRAEEAHQSAMPNGTTTENGGSNATFR 144

Query: 228 HANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV 287
           HANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV
Sbjct: 145 HANPSATEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV 204

Query: 288 QSSMAMQALQGFKIDPQHPMAISFAKK 315
           QSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 205 QSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Spg005782 vs. ExPASy TrEMBL
Match: A0A0A0LPT7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 1.1e-104
Identity = 198/207 (95.65%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 108 ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 167
           ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFY+KPMRI
Sbjct: 25  ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRI 84

Query: 168 QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSVMPNGTTAENGGANPTFR 227
           QYAKTKSDC+AKADGSFVPREKKKKQEEKAE+KRRAEE HQS MPNGTT ENGG+N TFR
Sbjct: 85  QYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRAEETHQSAMPNGTTTENGGSNATFR 144

Query: 228 HANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV 287
           HANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV
Sbjct: 145 HANPSATEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV 204

Query: 288 QSSMAMQALQGFKIDPQHPMAISFAKK 315
           QSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 205 QSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Spg005782 vs. TAIR 10
Match: AT1G06960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 309.3 bits (791), Expect = 3.5e-84
Identity = 161/208 (77.40%), Postives = 179/208 (86.06%), Query Frame = 0


Query: 108 ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 167
           ELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFYDKPMRI
Sbjct: 25  ELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRI 84

Query: 168 QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSVMPNGTTAENGGANPTFR 227
           QYAK+KSD V KA+GSFVP+EKK KQEEK ERKR AEE  Q  MPNG T +NG   P F+
Sbjct: 85  QYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQQPSMPNGATTQNGMPVPPFQ 144

Query: 228 HANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDD 287
              PS  +   PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDD
Sbjct: 145 ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDD 204

Query: 288 VQSSMAMQALQGFKIDPQHPMAISFAKK 315
           VQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 205 VQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of Spg005782 vs. TAIR 10
Match: AT1G06960.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 306.6 bits (784), Expect = 2.3e-83
Identity = 159/207 (76.81%), Postives = 176/207 (85.02%), Query Frame = 0


Query: 108 ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 167
           ELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFYDKPMRI
Sbjct: 25  ELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRI 84

Query: 168 QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSVMPNGTTAENGGANPTFR 227
           QYAK+KSD V KA+GSFVP+EKK KQEEK ERKR AEE  Q  MPNG T +NG   P   
Sbjct: 85  QYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQQPSMPNGATTQNGMPPPFQP 144

Query: 228 HANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDV 287
               + P   PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDV
Sbjct: 145 SGQDTMP---PNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDV 204

Query: 288 QSSMAMQALQGFKIDPQHPMAISFAKK 315
           QSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 205 QSSMAMQALQGFKITPQNPMVVSFAKK 228

[Close]

BLAST of Spg005782 vs. TAIR 10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B )

HSP 1 Score: 293.1 bits (749), Expect = 2.6e-79
Identity = 152/211 (72.04%), Postives = 178/211 (84.36%), Query Frame = 0


Query: 108 ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 167
           ELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FSEVTAA +AVRQMQNFPFYDKPMR+
Sbjct: 25  ELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRL 84

Query: 168 QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSV---MPNGTTAENGGANP 227
           QYAK KSDC+AKA+G+FVP++KK+KQEEK ERKR   +   +      NG +A NG   P
Sbjct: 85  QYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRPNTANGPSANGPSANNGVPAP 144

Query: 228 TFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF 287
           +F+   PS  E   PNNILFI+NLPHET+SMMLQ+LF+QYPGF+E+RMI+AKPGIAFVE+
Sbjct: 145 SFQ---PSGQETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEY 204

Query: 288 EDDVQSSMAMQALQGFKIDPQHPMAISFAKK 315
           EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 205 EDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of Spg005782 vs. TAIR 10
Match: AT1G06960.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 288.9 bits (738), Expect = 4.9e-78
Identity = 150/197 (76.14%), Postives = 169/197 (85.79%), Query Frame = 0


Query: 119 QYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVA 178
           ++GR+LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSD V 
Sbjct: 7   KFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVT 66

Query: 179 KADGSFVPREKKKKQEEKAERKRRAEEAHQSVMPNGTTAENGGANPTFRHANPSAPEA-T 238
           KA+GSFVP+EKK KQEEK ERKR AEE  Q  MPNG T +NG   P F+   PS  +   
Sbjct: 67  KAEGSFVPKEKKMKQEEKVERKRHAEETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMP 126

Query: 239 PNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 298
           PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQ
Sbjct: 127 PNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQ 186

Query: 299 GFKIDPQHPMAISFAKK 315
           GFKI PQ+PM +SFAKK
Sbjct: 187 GFKITPQNPMVVSFAKK 200

[Close]

BLAST of Spg005782 vs. TAIR 10
Match: AT2G47580.1 (spliceosomal protein U1A )

HSP 1 Score: 226.5 bits (576), Expect = 3.0e-59
Identity = 127/219 (57.99%), Postives = 160/219 (73.06%), Query Frame = 0


Query: 108 ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRI 167
           ELK+SL A+FSQ+G+IL+++A KT + +GQAWV F    +AS A+ +M NFPFYDK MRI
Sbjct: 33  ELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESASTAIAKMNNFPFYDKEMRI 92

Query: 168 QYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRAEEAHQSV---MP-NGTTAENGGAN 227
           QYAKTKSD VAKADG+FVPREK+K+ EEK   K++ ++ H S    MP N       GA 
Sbjct: 93  QYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHHDSTQMGMPMNSAYPGVYGAA 152

Query: 228 PTFRHA------NPSAPE--ATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAK 287
           P            P+ PE  A PNNILF++NLPHET+ M+LQ+LF QY GF+EVRMIEAK
Sbjct: 153 PPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAK 212

Query: 288 PGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 315
           PGIAFVEF D++QS++AMQ LQGFKI  Q+ M I++AKK
Sbjct: 213 PGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 250

The following BLAST results are available for this feature:

BLAST of Spg005782 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949507.1	1.2e-105	97.10	U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346...	[more]
XP_023525708.1	2.6e-105	96.62	U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. ...	[more]
XP_008457301.1	1.3e-104	96.14	PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo] >KAA0059...	[more]
XP_004137370.1	2.2e-104	95.65	U2 small nuclear ribonucleoprotein B'' 2 [Cucumis sativus] >KGN63915.1 hypotheti...	[more]
XP_022154903.1	2.9e-104	95.65	U2 small nuclear ribonucleoprotein B'' 2-like [Momordica charantia]	[more]

BLAST of Spg005782 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H1S6	5.0e-83	77.40	U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
O22922	3.7e-78	72.04	U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' ...	[more]
B8AM21	9.4e-74	73.21	U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN...	[more]
Q10MR0	2.1e-73	72.73	U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q39244	4.2e-58	57.99	U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1...	[more]

BLAST of Spg005782 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KA04	5.7e-106	97.10	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1GC84	5.7e-106	97.10	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5D3BF51	6.3e-105	96.14	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3C564	6.3e-105	96.14	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0LPT7	1.1e-104	95.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1	[more]

BLAST of Spg005782 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06960.1	3.5e-84	77.40	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G06960.2	2.3e-83	76.81	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G30260.1	2.6e-79	72.04	U2 small nuclear ribonucleoprotein B	[more]
AT1G06960.3	4.9e-78	76.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G47580.1	3.0e-59	57.99	spliceosomal protein U1A	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 187..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 209..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..225
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 108..314
None	No IPR available	PANTHER	PTHR10501:SF13	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 108..314
None	No IPR available	CDD	cd12246	RRM1_U1A_like	coord: 108..171 e-value: 4.17244E-40 score: 133.423
None	No IPR available	CDD	cd12247	RRM2_U1A_like	coord: 238..310 e-value: 5.21611E-39 score: 130.381
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 241..310 e-value: 3.6E-10 score: 49.8 coord: 102..168 e-value: 2.0E-4 score: 30.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 111..165 e-value: 3.0E-6 score: 27.0 coord: 242..302 e-value: 5.1E-12 score: 45.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 240..314 score: 13.293717
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 110..172 score: 10.974183
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 105..194 e-value: 3.3E-21 score: 77.4
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 229..314 e-value: 1.1E-21 score: 78.7
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 112..301

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005782.1	Spg005782.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005686	U2 snRNP
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding