Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
atgccaggagcgcgcagatgccgaagcacgccaggggcgcgcgctgccagccacgatcgggacgacgacgtctccacaggcgtaacaaaggcctgggctttggccgccgtcccaatccgcatcggtccatgccccaagtcgatcggcggacggttctcacgttacatccgactggggcacatcgccggcccccatccgcttccctcccgacaatttcaagcactatttgactctcttttcaaagtccttttcatctttccctcgcgggtacttgtttgctatcggtctctcgcccatatttagccttggacagaatttaccgcccgattggggctgcattccaaacaacccgactcgttgacagcgcctcgtggtgcgacagggtcgagcgcaacggggctctcaccctctccggcgccccttccaggggacttgtgcccggtccgccgctgaggacgcttctccagactacaattcggacgccgagggcgcccgattctcaagctgggctcttcccggttcgctcgccgttactaggggaatccttgtaagttcttttcctccgcttattgatatgcttaaactcagcgggtagtcccgcctgacctggggtcgcgtcgagagcatcgtctttggggacgacgttcagagggtcgacatagaagtcctcgctcgctcgcggggaggagttgcgcggactgaggtcgcgaccgggggtaccgaggtggatcaaccaccgtagtgtcgcgacgacaggcgccgaggactcgaatttaagccatccgcacgacggtgcgcacggggaggccaggtgtgccgcacctgcgcaaccaacccgaaggggggttgcgtggggggcagcgatgcgtgacgcccaggcagacgtggcctcggccagaaggctccgggcgcaacttgcgttcaaagactcggtggtcgcggcggatcctgcaattccaacaagtatagattcgctacgtctcatcgatgcgagagccgagatatccgttgccgagagtcgttgtgaataa
mRNA sequence
atgccaggagcgcgcagatgccgaagcacgccaggggcgcgcgctgccagccacgatcgggacgacgacgtctccacaggcgtaacaaaggcctgggctttggccgccgtcccaatccgcatcggtccatgccccaagtcgatcggcggacggttctcacgttacatccgactggggcacatcgccggcccccatccgcttccctcccgacaatttcaagcactatttgactctcttttcaaagtccttttcatctttccctcgcggggtcgagcgcaacggggctctcaccctctccggcgccccttccaggggacttgtgcccggtccgccgctgaggacgcttctccagactacaattcggacgccgagggcgcccgattctcaagctgggctcttcccggttcgctcgccgttactaggggaatccttaagtcctcgctcgctcgcggggaggagttgcgcggactgaggtcgcgaccgggggtaccgaggtggatcaaccaccgtagtgtcgcgacgacaggcgccgaggactcgaatttaagccatccgcacgacggtgcgcacggggaggccaggtgtgccgcacctgcgcaaccaacccgaaggggggttgcgtggggggcagcgatgcgtgacgcccaggcagacgtggcctcggccagaaggctccgggcgcaacttgcgttcaaagactcggtggtcgcggcggatcctgcaattccaacaagtatagattcgctacgtctcatcgatgcgagagccgagatatccgttgccgagagtcgttgtgaataa
Coding sequence (CDS)
atgccaggagcgcgcagatgccgaagcacgccaggggcgcgcgctgccagccacgatcgggacgacgacgtctccacaggcgtaacaaaggcctgggctttggccgccgtcccaatccgcatcggtccatgccccaagtcgatcggcggacggttctcacgttacatccgactggggcacatcgccggcccccatccgcttccctcccgacaatttcaagcactatttgactctcttttcaaagtccttttcatctttccctcgcggggtcgagcgcaacggggctctcaccctctccggcgccccttccaggggacttgtgcccggtccgccgctgaggacgcttctccagactacaattcggacgccgagggcgcccgattctcaagctgggctcttcccggttcgctcgccgttactaggggaatccttaagtcctcgctcgctcgcggggaggagttgcgcggactgaggtcgcgaccgggggtaccgaggtggatcaaccaccgtagtgtcgcgacgacaggcgccgaggactcgaatttaagccatccgcacgacggtgcgcacggggaggccaggtgtgccgcacctgcgcaaccaacccgaaggggggttgcgtggggggcagcgatgcgtgacgcccaggcagacgtggcctcggccagaaggctccgggcgcaacttgcgttcaaagactcggtggtcgcggcggatcctgcaattccaacaagtatagattcgctacgtctcatcgatgcgagagccgagatatccgttgccgagagtcgttgtgaataa
Protein sequence
MPGARRCRSTPGARAASHDRDDDVSTGVTKAWALAAVPIRIGPCPKSIGGRFSRYIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRGRAQRGSHPLRRPFQGTCARSAAEDASPDYNSDAEGARFSSWALPGSLAVTRGILKSSLARGEELRGLRSRPGVPRWINHRSVATTGAEDSNLSHPHDGAHGEARCAAPAQPTRRGVAWGAAMRDAQADVASARRLRAQLAFKDSVVAADPAIPTSIDSLRLIDARAEISVAESRCE
Homology
BLAST of Spg005729 vs. NCBI nr
Match:
KAF7112640.1 (hypothetical protein RHSIM_RhsimUnG0208700 [Rhododendron simsii] >KAF7112643.1 hypothetical protein RHSIM_RhsimUnG0208200 [Rhododendron simsii] >KAF7144217.1 hypothetical protein RHSIM_Rhsim05G0123700 [Rhododendron simsii])
HSP 1 Score: 186.8 bits (473), Expect = 2.4e-43
Identity = 115/213 (53.99%), Postives = 131/213 (61.50%), Query Frame = 0
Query: 1 MPGARRCRSTPGARAASHDRDDDVSTGVTKAWALAAVPIRIGPCPKSIGG-RFSRY-IRL 60
+PGARRCRSTP A AASHDR + VSTG+T +WALA+VPIR GP P+SIGG FS + IR
Sbjct: 97 VPGARRCRSTPKAHAASHDRGEGVSTGLTTSWALASVPIRTGPHPESIGGPGFSPFHIRP 156
Query: 61 GHIAGPHPLPSRQFQALFDSLFKVLFIFPSRGRAQRGSHPL------------------- 120
G IAGPH LPSRQFQALFDSLFKVLFIFPSR G P+
Sbjct: 157 GRIAGPHSLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGRNLPPDWGCIPKQPD 216
Query: 121 --------------------RRPFQGTCARSAAEDASPDYNSDAEGARFSSWALPGSLAV 171
PFQGT ARS AEDASPDYNS+ E ARFSSWA+PGSLAV
Sbjct: 217 SPTAPRGATGSEHDGALTLSGAPFQGTWARSVAEDASPDYNSNNEIARFSSWAIPGSLAV 276
BLAST of Spg005729 vs. NCBI nr
Match:
KAF7143454.1 (hypothetical protein RHSIM_Rhsim05G0123300 [Rhododendron simsii])
HSP 1 Score: 185.3 bits (469), Expect = 7.0e-43
Identity = 110/187 (58.82%), Postives = 120/187 (64.17%), Query Frame = 0
Query: 1 MPGARRCRSTPGARAASHDRDDDVSTGVTKAWALAAVPIRIGPCPKSIGG-RFSRY-IRL 60
+PGARRCRSTP A AASHDR + VSTG+T +WALA+VPIR GP P+SIGG FS + IR
Sbjct: 97 VPGARRCRSTPKAHAASHDRGEGVSTGLTTSWALASVPIRTGPHPESIGGPGFSPFHIRP 156
Query: 61 GHIAGPHPLPSRQFQALFDSLFKVLFIFPSRGRAQRGSHPL------------------- 120
G IAGPH LPSRQFQALFDSLFKVLFIFPSR G P+
Sbjct: 157 GRIAGPHSLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGRNLPPDWGCIPKQPD 216
Query: 121 --------------------RRPFQGTCARSAAEDASPDYNSDAEGARFSSWALPGSLAV 147
PFQGT ARS AEDASPDYNS+ E ARFSSWA+PGSLAV
Sbjct: 217 SPTAPRGATGSEHDGALTLSGAPFQGTWARSVAEDASPDYNSNNEIARFSSWAIPGSLAV 276
BLAST of Spg005729 vs. NCBI nr
Match:
KAE8637537.1 (hypothetical protein CSA_017393 [Cucumis sativus])
HSP 1 Score: 177.2 bits (448), Expect = 1.9e-40
Identity = 112/199 (56.28%), Postives = 117/199 (58.79%), Query Frame = 0
Query: 55 YIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSR------------------------- 114
+IRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSR
Sbjct: 14 HIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIP 73
Query: 115 -------------GRAQRGSHPLR-RPFQGTCARSAAEDASPDYNSDAEGARFSSWALPG 174
G + G+ L PFQGTCARSAAEDASPDYNS+ + ARFSSWALPG
Sbjct: 74 KQPDSLTAPRGATGSERNGALTLSGAPFQGTCARSAAEDASPDYNSNVDDARFSSWALPG 133
Query: 175 SLAVTRGILKSSLARGE-----ELRGLRS--RPGV-----------PRWINHRSVATTGA 197
SLAVTRGIL S L G LRG RS GV WINHRSVATT
Sbjct: 134 SLAVTRGIL-SRLTWGRVESVVPLRGRRSEGHAGVRGGDVEAETRHRGWINHRSVATTSV 193
BLAST of Spg005729 vs. NCBI nr
Match:
KAG6384451.1 (hypothetical protein SASPL_155737 [Salvia splendens])
HSP 1 Score: 173.3 bits (438), Expect = 2.8e-39
Identity = 132/294 (44.90%), Postives = 144/294 (48.98%), Query Frame = 0
Query: 2 PGARRCRSTPGARAASHDRDDDVSTGVTKAWALAAV----PIRIGPCPKSIGGRFSRY-I 61
PGAR CRST ARA HDR D GV +A+ L + + P R S + I
Sbjct: 87 PGARSCRSTHEARAVRHDRSD----GVPRAYQLPGLWPPPQSALVRAPSRSADRLSPFHI 146
Query: 62 RLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRGRAQRGSHPL----------------- 121
R GHIAGPHPLPSRQFQALFDSLFKVLFIFPSR G P+
Sbjct: 147 RPGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPVFSLGRNLPPDWGCIPKQ 206
Query: 122 ----------------------RRPFQGTCARSAAEDASPDYNSDAEGARFSSWALPGSL 181
PFQGT ARSAAEDASPDYNSD ARFSSWA PGSL
Sbjct: 207 PDSPTAPRDATGSGHDGALTLSGAPFQGTWARSAAEDASPDYNSDGVAARFSSWAFPGSL 266
Query: 182 AVTRGI---------------LKSSLARGEELRGLRSRPGVPRWINHRSVATTGAEDSNL 237
AVT+GI L ++ RG+ RGL RP TTG
Sbjct: 267 AVTKGILVPGATSTRTTVSEGLSTTACRGDRRRGLDFRP------------TTGGSARET 326
BLAST of Spg005729 vs. NCBI nr
Match:
KAF1856143.1 (hypothetical protein Lal_00046654, partial [Lupinus albus])
HSP 1 Score: 149.1 bits (375), Expect = 5.6e-32
Identity = 95/203 (46.80%), Postives = 112/203 (55.17%), Query Frame = 0
Query: 8 RSTPGARAASHDRDDDVSTGVTKAWALAAVPIRIGPCPKSIGGRFSRYIRLGHIA----G 67
+ T ARA++H+RDDDVST ++ A A A + IR+GPCP+SIGG + + H
Sbjct: 455 KHTETARASNHNRDDDVSTSMSTARAWATITIRVGPCPESIGG---PALAVPHPTEAHRR 514
Query: 68 PHPLPSRQFQALFDSLFKVLFIFPSRGRAQRGSHPL------------------------ 127
PHPLPSRQFQALFDSLFKVLFIFPSR G P+
Sbjct: 515 PHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPVFSLGRNLPPDWGCIPKQPDSPTAP 574
Query: 128 ---------------RRPFQGTCARSAAEDASPDYNSDAEGARFSSWALPGSLAVTRGIL 161
PFQGT ARSA EDASPDYNSD EG RFS WA PGSLAVT+GIL
Sbjct: 575 RGATGSGHDGALTLSGAPFQGTWARSATEDASPDYNSDTEGVRFSWWAFPGSLAVTKGIL 634
BLAST of Spg005729 vs. ExPASy TrEMBL
Match:
A0A0A0KEK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G239680 PE=4 SV=1)
HSP 1 Score: 177.2 bits (448), Expect = 9.2e-41
Identity = 112/199 (56.28%), Postives = 117/199 (58.79%), Query Frame = 0
Query: 55 YIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSR------------------------- 114
+IRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSR
Sbjct: 14 HIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIP 73
Query: 115 -------------GRAQRGSHPLR-RPFQGTCARSAAEDASPDYNSDAEGARFSSWALPG 174
G + G+ L PFQGTCARSAAEDASPDYNS+ + ARFSSWALPG
Sbjct: 74 KQPDSLTAPRGATGSERNGALTLSGAPFQGTCARSAAEDASPDYNSNVDDARFSSWALPG 133
Query: 175 SLAVTRGILKSSLARGE-----ELRGLRS--RPGV-----------PRWINHRSVATTGA 197
SLAVTRGIL S L G LRG RS GV WINHRSVATT
Sbjct: 134 SLAVTRGIL-SRLTWGRVESVVPLRGRRSEGHAGVRGVHVKVETRHRGWINHRSVATTSV 193
BLAST of Spg005729 vs. ExPASy TrEMBL
Match:
A0A6N2MPB6 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS385919 PE=4 SV=1)
HSP 1 Score: 168.7 bits (426), Expect = 3.3e-38
Identity = 134/284 (47.18%), Postives = 148/284 (52.11%), Query Frame = 0
Query: 13 ARAASHDRDDDVSTGVTKAWALAAVPIRIGPCPKSI--------GGRFSRY-IRLGHIAG 72
ARAA HDR D +STGV+KA R+ P P+S R S + IR G IAG
Sbjct: 911 ARAAVHDRSDGISTGVSKA--------RLRPPPRSASVHAPSRSADRLSPFHIRPGRIAG 970
Query: 73 PHPLPSRQFQALFDSLFKVLFIFPSR-------------GR-----------------AQ 132
PHPLPSRQFQALFDSLFKVLFIFPSR GR A
Sbjct: 971 PHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGRNLPPDWGCIPKQPDSQTAP 1030
Query: 133 RG----SHP-----LRRPFQGTCARSAAEDASPDYNSDAEGARFSSWALPGSLAVTRGIL 192
RG SH PFQGT A SAAEDASPDYNS+A GARFSSWA PGSLAVTRGIL
Sbjct: 1031 RGAAGSSHDGALTLSGAPFQGTWAWSAAEDASPDYNSNAAGARFSSWAFPGSLAVTRGIL 1090
Query: 193 -KSSLARGEEL-----RGLRSRPGV--PRWINHRSVATTGAEDSNLS----HPHDGAHGE 237
+ + R E + G+R PG R ++TT + P G
Sbjct: 1091 SRLTWGRNESILESQCSGVREVPGATSTRTTVSEGLSTTACRGNRRRGLDFRPTTGGSAR 1150
BLAST of Spg005729 vs. ExPASy TrEMBL
Match:
A0A6N2K0Y8 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS15913 PE=4 SV=1)
HSP 1 Score: 166.0 bits (419), Expect = 2.1e-37
Identity = 132/279 (47.31%), Postives = 145/279 (51.97%), Query Frame = 0
Query: 13 ARAASHDRDDDVSTGVTKAWALAAVPIRIGPCPKSIGGRFSRYIRLGHIAG----PHPLP 72
ARAA HDR D +STG AA IRIGP P+ IGG + + H G PHPLP
Sbjct: 600 ARAAVHDRSDGISTG-------AATAIRIGPRPEPIGG---PAVAVPHPTGAHRRPHPLP 659
Query: 73 SRQFQALFDSLFKVLFIFPSR-------------GR-----------------AQRG--- 132
SRQFQALFDSLFKVLFIFPSR GR A RG
Sbjct: 660 SRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGRNLPPDWGCIPKQPDSQTAPRGAAG 719
Query: 133 -SHP-----LRRPFQGTCARSAAEDASPDYNSDAEGARFSSWALPGSLAVTRGIL-KSSL 192
SH PFQGT A SAAEDASPDYNS+A GARFSSWA PGSLAVTRGIL + +
Sbjct: 720 SSHDGALTLSGAPFQGTWAWSAAEDASPDYNSNAAGARFSSWAFPGSLAVTRGILSRLTW 779
Query: 193 ARGEEL-----RGLRSRPGV--PRWINHRSVATTGAEDSNLS----HPHDGAHGEARCAA 237
R E + G+R PG R ++TT + P G
Sbjct: 780 GRNESILESQCSGVREVPGATSTRTTVSEGLSTTACRGNRRRGLDFRPTTGGSARETSIR 839
BLAST of Spg005729 vs. ExPASy TrEMBL
Match:
A0A6N2KB50 (Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS20822 PE=4 SV=1)
HSP 1 Score: 150.2 bits (378), Expect = 1.2e-32
Identity = 114/233 (48.93%), Postives = 124/233 (53.22%), Query Frame = 0
Query: 55 YIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSR-------------GR---------- 114
+IR G IAGPHPLPSRQFQALFDSLFKVLFIFPSR GR
Sbjct: 832 HIRPGRIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGRNLPPDWGCIP 891
Query: 115 -------AQRG----SHP-----LRRPFQGTCARSAAEDASPDYNSDAEGARFSSWALPG 174
A RG SH PFQGT A SAAEDASPDYNS+A GARFSSWA PG
Sbjct: 892 KQPDSQTAPRGAAGSSHDGALTLSGAPFQGTWAWSAAEDASPDYNSNAAGARFSSWAFPG 951
Query: 175 SLAVTRGIL-KSSLARGEEL-----RGLRSRPGV--PRWINHRSVATTGAEDSNLS---- 234
SLAVTRGIL + + R E + G+R PG R ++TT +
Sbjct: 952 SLAVTRGILSRLTWGRNESILESQCSGVREVPGATSTRTTVSEGLSTTACRGNRRRGLDF 1011
Query: 235 HPHDGAHGEARCAAPAQPTRRGVAWGAAMRDAQADVASARRLRAQLAFKDSVV 237
P G P RGV GA MRD QADV S RR RAQLAFKDS+V
Sbjct: 1012 RPTTGGSARETSIRPRPREPRGV--GATMRDTQADVPSTRRPRAQLAFKDSMV 1062
BLAST of Spg005729 vs. ExPASy TrEMBL
Match:
A0A6N2NHA9 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS498692 PE=4 SV=1)
HSP 1 Score: 150.2 bits (378), Expect = 1.2e-32
Identity = 114/233 (48.93%), Postives = 124/233 (53.22%), Query Frame = 0
Query: 55 YIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSR-------------GR---------- 114
+IR G IAGPHPLPSRQFQALFDSLFKVLFIFPSR GR
Sbjct: 924 HIRPGRIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGRNLPPDWGCIP 983
Query: 115 -------AQRG----SHP-----LRRPFQGTCARSAAEDASPDYNSDAEGARFSSWALPG 174
A RG SH PFQGT A SAAEDASPDYNS+A GARFSSWA PG
Sbjct: 984 KQPDSQTAPRGAAGSSHDGALTLSGAPFQGTWAWSAAEDASPDYNSNAAGARFSSWAFPG 1043
Query: 175 SLAVTRGIL-KSSLARGEEL-----RGLRSRPGV--PRWINHRSVATTGAEDSNLS---- 234
SLAVTRGIL + + R E + G+R PG R ++TT +
Sbjct: 1044 SLAVTRGILSRLTWGRNESILESQCSGVREVPGATSTRTTVSEGLSTTACRGNRRRGLDF 1103
Query: 235 HPHDGAHGEARCAAPAQPTRRGVAWGAAMRDAQADVASARRLRAQLAFKDSVV 237
P G P RGV GA MRD QADV S RR RAQLAFKDS+V
Sbjct: 1104 RPTTGGSARETSIRPRPREPRGV--GATMRDTQADVPSTRRPRAQLAFKDSMV 1154
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAF7112640.1 | 2.4e-43 | 53.99 | hypothetical protein RHSIM_RhsimUnG0208700 [Rhododendron simsii] >KAF7112643.1 h... | [more] |
KAF7143454.1 | 7.0e-43 | 58.82 | hypothetical protein RHSIM_Rhsim05G0123300 [Rhododendron simsii] | [more] |
KAE8637537.1 | 1.9e-40 | 56.28 | hypothetical protein CSA_017393 [Cucumis sativus] | [more] |
KAG6384451.1 | 2.8e-39 | 44.90 | hypothetical protein SASPL_155737 [Salvia splendens] | [more] |
KAF1856143.1 | 5.6e-32 | 46.80 | hypothetical protein Lal_00046654, partial [Lupinus albus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KEK9 | 9.2e-41 | 56.28 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G239680 PE=4 SV=1 | [more] |
A0A6N2MPB6 | 3.3e-38 | 47.18 | Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS385919 PE=4 SV=... | [more] |
A0A6N2K0Y8 | 2.1e-37 | 47.31 | Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS15913 PE=4 SV=1 | [more] |
A0A6N2KB50 | 1.2e-32 | 48.93 | Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS2082... | [more] |
A0A6N2NHA9 | 1.2e-32 | 48.93 | Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS498692 PE=4 SV=... | [more] |
Match Name | E-value | Identity | Description | |