Spg005642 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005642
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold8: 20805368 .. 20805994 (+)
RNA-Seq Expression	Spg005642
Synteny	Spg005642

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAACCACCCACGATAGCACCATCTCAGTGGATAGCGTTATGCTCCTCTACTGTATTATGAAGGGGTCGGAGATCAACATTGGGAGCATAATCAGGGAGGAAATTCTAGCCTGTGGAAGGAAAAGAGCAGGTAAACTTTTCTTTGGATCCCTAATCACCCAGCTTTGTCAGAGGGTGAAGATTGTTCCGAGCAAGGATGAGGAGCGTCATTTCTTCAAGCCTACCATTGACCTATCCTTGATCAGGAAGCTTCAACAAAATAGCCTCCAAAGAAAAGATAAAGCCTCCACATCTTAGGTCACTCCACCATCAGGGCCGAACATGGCTTCTCCACCCCAGCACACTCCTTTTTCAAGGCCCTCACCATCATCTAAAGCTCTGGTCATTGCCTATCGTTAGCTAGATCAGATCAGGGACAACCTGAGGACTTATTGGGCATATGCAAAGGAGAGGGATGAAGCCATTAGAGAGTTCTACCTCTCTATCGCCCCGAGTATTGCTCCTGTCTTTCCCAATTTCCCTCAATCGCTGCTGCCTCAAGAAGATAAGGATTCTGATGAAGAAGAAGATGAAAATGATGATGAAGAAGATGAAGAGAAAGAGAGTTCCTCGGACGAGGACTAG

mRNA sequence

ATGCCAACCACCCACGATAGCACCATCTCAGTGGATAGCGTTATGCTCCTCTACTGTATTATGAAGGGGTCGGAGATCAACATTGGGAGCATAATCAGGGAGGAAATTCTAGCCTGTGGAAGGAAAAGAGCAGATCAGATCAGGGACAACCTGAGGACTTATTGGGCATATGCAAAGGAGAGGGATGAAGCCATTAGAGAGTTCTACCTCTCTATCGCCCCGAGTATTGCTCCTGTCTTTCCCAATTTCCCTCAATCGCTGCTGCCTCAAGAAGATAAGGATTCTGATGAAGAAGAAGATGAAAATGATGATGAAGAAGATGAAGAGAAAGAGAGTTCCTCGGACGAGGACTAG

Coding sequence (CDS)

ATGCCAACCACCCACGATAGCACCATCTCAGTGGATAGCGTTATGCTCCTCTACTGTATTATGAAGGGGTCGGAGATCAACATTGGGAGCATAATCAGGGAGGAAATTCTAGCCTGTGGAAGGAAAAGAGCAGATCAGATCAGGGACAACCTGAGGACTTATTGGGCATATGCAAAGGAGAGGGATGAAGCCATTAGAGAGTTCTACCTCTCTATCGCCCCGAGTATTGCTCCTGTCTTTCCCAATTTCCCTCAATCGCTGCTGCCTCAAGAAGATAAGGATTCTGATGAAGAAGAAGATGAAAATGATGATGAAGAAGATGAAGAGAAAGAGAGTTCCTCGGACGAGGACTAG

Protein sequence

MPTTHDSTISVDSVMLLYCIMKGSEINIGSIIREEILACGRKRADQIRDNLRTYWAYAKERDEAIREFYLSIAPSIAPVFPNFPQSLLPQEDKDSDEEEDENDDEEDEEKESSSDED

Homology

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BLAST of Spg005642 vs. NCBI nr
Match: XP_024971944.1 (uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus])

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-04
Identity = 21/46 (45.65%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 2   PTTHDSTISVDSVMLLYCIMKGSEINIGSIIREEILACGRKRADQI 48
           PTTHDS+ISV+ ++LLYC++ G  IN+G ++ + IL C ++R  ++
Sbjct: 350 PTTHDSSISVEKIILLYCVVTGRTINVGKVVEKAILYCSKRRQGKL 395

The following BLAST results are available for this feature:

BLAST of Spg005642 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024971944.1	2.8e-04	45.65	uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus]	[more]

BLAST of Spg005642 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg005642 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg005642 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 88..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005642.1	Spg005642.1	mRNA