Spg005426 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg005426
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Locationscaffold6: 35921002 .. 35922710 (-)
RNA-Seq ExpressionSpg005426
SyntenySpg005426
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTTTAAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGTTCATGCAAGCCAGCCATAGCAGAATCTGAGTTCAATCTGGCAACCTCTGGTTTTGGATTCGGTTTGAGCTACACAGACTGAATCAATAGGTGAGGTTTGATGTTCTTGAAAGTTAGTTCAATTTCTAACAAACTTCATGAAGGAAGCTTGACCTAAATCGAATGAAACGTTGATGGTTTTTTGAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGATGTTTTGAGTATTCTGGAGTGCACAAGTCGAATCCGAAGCTCTATTTGGTATGGTTGAAAAGCTTATTCAATATCCTGCAACTTTTATGAAGAATTAGGTTTAATTTCAGGAGGAAGATAAAGGGTAGCAGAGAACCTCGAATTCTGTATTGTCTGTGTTCGGGGCAATTCTGGGCTAATTGGTTGAGAATCTCGTTTTCCTTTCTTCAGGTAAGTTGTCGAGTGTTCGAAAATGAAGAGTTTTATGTATATTTCATTAATTTTGGTTAAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTCGAAAGTAGAATGTGAATGTGATTCTTAATCCAATTGTTTAGAAAATTCATGAGCATGGAAAGAAAAAGCTATCTATGGTTCTAATGCTCGGTTTTCGTTATTTGACAGGCCAAGAGGAAATAGGCCGAGTCTACAAACCGGGGAACTAGATAAGACAGTGAGTGACAAAACAAATTTCGAAAAATGTTCTTAAACGGTTGGTCATGATTATATGTTTTACATGCTTTTCTATGAATGATACGTGGTTTTTATGAACGGTTTCAAGCGTGAATTTTGAGCTTAGATTTTCTAATGAGGTTTATATACGAGCACGTGACTAATGGCTTTATGAAAAGTAGTTGAAACGATATCTTTTAAAGTAAAGCATGTGTTAGCAAATATTGTTTAATGATTTAAAGTTTTTCACGAGCAAGCTGAGTAAGCTTGAGTTTTACGAAAGATAACGATAAGCAGACATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGGCTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTTTGTTGTCGACGTTGAGTTTACTTTGTGACAACGATGCTTTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGAGAGTGCTGGGTGAGCCCCACTACATCGTAGGACTAGTAACGTTGGTTGTACTGGGCGTGCCCTTCACAACGTAGATCGGTCATGTTAGTTAAAACGTTGATGTATTTGATATGCCTTGCTAGATTTTTAATGACGAACTTGCGAGATGATTTAGAAAGCCCTTAACCTTACACGTTTATGTTAAACGCTTTGACTGAGCATATTTATTCCTTTAAAGGTTTATCACGTGTTTTTGACTTCCGGATTTAGGGTTTTAAAGCTCTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTCAACTTTTTAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCGGATCAAGCTCCAGTACGTGGGTGGAGTTGTTTATTGAGTCTGTTCATATTGTAAATGTTTTGTAA

mRNA sequence

AACTTTAAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGTTCATGCAAGCCAGCCATAGCAGAATCTGAGTTCAATCTGGCAACCTCTGGTTTTGGATTCGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGATGTTTTGAGTATTCTGGAGTGCACAAGTCGAATCCGAAGCTCTATTTGGCCAAGAGGAAATAGGCCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCGGATCAAGCTCCAGTACGTGGGTGGAGTTGTTTATTGAGTCTGTTCATATTGTAAATGTTTTGTAA

Coding sequence (CDS)

AACTTTAAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGTTCATGCAAGCCAGCCATAGCAGAATCTGAGTTCAATCTGGCAACCTCTGGTTTTGGATTCGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGATGTTTTGAGTATTCTGGAGTGCACAAGTCGAATCCGAAGCTCTATTTGGCCAAGAGGAAATAGGCCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCGGATCAAGCTCCAGTACGTGGGTGGAGTTGTTTATTGAGTCTGTTCATATTGTAAATGTTTTGTAA

Protein sequence

NFKERVKEEEEEEFRGLRLKKIGKSSCKPAIAESEFNLATSGFGFGFSSKPGGSLVFSDVLSILECTSRIRSSIWPRGNRPSLQTGELDKTVEIELPVPDTLPTSAESSGSSSSTWVELFIESVHIVNVL
Homology
[Close]
BLAST of Spg005426 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 4.8e-21
Identity = 68/118 (57.63%), Postives = 75/118 (63.56%), Query Frame = 0 

Query: 22  IGKSSCKPAIAESEFNLATSGFGFG-------------FSSKPGGSLVFSDVLSILECTS 81
           I K + KPAIAES  N       FG             F SK GG LVFSD LSIL    
Sbjct: 23  IEKVNAKPAIAESGCNCQPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSIL---- 82

Query: 82  RIRSSIWPRGNRPSLQTGELDKTVEIELPVPDTLPTSAESSGSSSSTWVELFIESVHI 127
                  PRGNRP+L TG+LDKTVEIELPVPDTLPTSAESS S+SSTW+EL+ ESVH+
Sbjct: 83  -------PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHV 129

[Close]
BLAST of Spg005426 vs. NCBI nr
Match: KAA0066795.1 (uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa] >TYK27942.1 uncharacterized protein E5676_scaffold384G001370 [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 6.3e-21
Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 0 

Query: 46  GFSSKPGGSLVFSDVLSILEC--TSRIRSSIWPRGNRPSLQTGELDKTVEIELPVPDTLP 105
           G SSKP G LVFSD LS+LE   + +    +WPRGNRPSLQT ELDKT  IELPVPDTLP
Sbjct: 32  GSSSKPAGVLVFSDALSMLEVHKSDQKLYLVWPRGNRPSLQTRELDKT--IELPVPDTLP 91

Query: 106 TSAESSGSSSSTWVELFIESVHI 127
           TSAESSGS+SSTW+EL+ ESVH+
Sbjct: 92  TSAESSGSNSSTWLELYFESVHV 112

[Close]
BLAST of Spg005426 vs. NCBI nr
Match: TYK25935.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-20
Identity = 62/104 (59.62%), Postives = 69/104 (66.35%), Query Frame = 0 

Query: 46  GFSSKPGGSLVFSDVLSILE---CTSRIRSSI---WPRGNRPSLQTGELDK--------- 105
           GFSSKPGG LVFSD LSI E      ++   I   WPRGNRP LQTGELDK         
Sbjct: 267 GFSSKPGGFLVFSDALSIQEVHKSNQKLYLEIDKEWPRGNRPGLQTGELDKIVIFPLSTL 326

Query: 106 --------TVEIELPVPDTLPTSAESSGSSSSTWVELFIESVHI 127
                    VEIELP+PDTLPTSAESSGS+SSTW+EL+ ESVH+
Sbjct: 327 SVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHV 370

[Close]
BLAST of Spg005426 vs. NCBI nr
Match: KAA0040194.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-20
Identity = 62/104 (59.62%), Postives = 69/104 (66.35%), Query Frame = 0 

Query: 46  GFSSKPGGSLVFSDVLSILE---CTSRIRSSI---WPRGNRPSLQTGELDK--------- 105
           GFSSKPGG LVFSD LSI E      ++   I   WPRGNRP LQTGELDK         
Sbjct: 267 GFSSKPGGFLVFSDALSIQEVHKSNQKLYLEIDKEWPRGNRPGLQTGELDKIVIFPLSTL 326

Query: 106 --------TVEIELPVPDTLPTSAESSGSSSSTWVELFIESVHI 127
                    VEIELP+PDTLPTSAESSGS+SSTW+EL+ ESVH+
Sbjct: 327 SVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHV 370

[Close]
BLAST of Spg005426 vs. NCBI nr
Match: TYK11835.1 (uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-19
Identity = 61/98 (62.24%), Postives = 69/98 (70.41%), Query Frame = 0 

Query: 46  GFSSKPGGSLVFSDVLSILECTSRIRSSIW--PRGNRPSLQTGELDKTV----------- 105
           GFSSKPGG LV SD LSILE   ++   ++  PRGNR SLQTGELDKTV           
Sbjct: 32  GFSSKPGGFLVLSDALSILE-IHKLNQKLYLGPRGNRLSLQTGELDKTVIFSLSTLSVLR 91

Query: 106 ----EIELPVPDTLPTSAESSGSSSSTWVELFIESVHI 127
                IELPVPDTLPTSAESSGS+SSTW+EL+ ESVH+
Sbjct: 92  DNNAVIELPVPDTLPTSAESSGSNSSTWLELYFESVHV 128

[Close]
BLAST of Spg005426 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.3e-21
Identity = 68/118 (57.63%), Postives = 75/118 (63.56%), Query Frame = 0 

Query: 22  IGKSSCKPAIAESEFNLATSGFGFG-------------FSSKPGGSLVFSDVLSILECTS 81
           I K + KPAIAES  N       FG             F SK GG LVFSD LSIL    
Sbjct: 23  IEKVNAKPAIAESGCNCQPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSIL---- 82

Query: 82  RIRSSIWPRGNRPSLQTGELDKTVEIELPVPDTLPTSAESSGSSSSTWVELFIESVHI 127
                  PRGNRP+L TG+LDKTVEIELPVPDTLPTSAESS S+SSTW+EL+ ESVH+
Sbjct: 83  -------PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHV 129

[Close]
BLAST of Spg005426 vs. ExPASy TrEMBL
Match: A0A5D3DWP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001370 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.0e-21
Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 0 

Query: 46  GFSSKPGGSLVFSDVLSILEC--TSRIRSSIWPRGNRPSLQTGELDKTVEIELPVPDTLP 105
           G SSKP G LVFSD LS+LE   + +    +WPRGNRPSLQT ELDKT  IELPVPDTLP
Sbjct: 32  GSSSKPAGVLVFSDALSMLEVHKSDQKLYLVWPRGNRPSLQTRELDKT--IELPVPDTLP 91

Query: 106 TSAESSGSSSSTWVELFIESVHI 127
           TSAESSGS+SSTW+EL+ ESVH+
Sbjct: 92  TSAESSGSNSSTWLELYFESVHV 112

[Close]
BLAST of Spg005426 vs. ExPASy TrEMBL
Match: A0A5A7T9P7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G00060 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.5e-20
Identity = 62/104 (59.62%), Postives = 69/104 (66.35%), Query Frame = 0 

Query: 46  GFSSKPGGSLVFSDVLSILE---CTSRIRSSI---WPRGNRPSLQTGELDK--------- 105
           GFSSKPGG LVFSD LSI E      ++   I   WPRGNRP LQTGELDK         
Sbjct: 267 GFSSKPGGFLVFSDALSIQEVHKSNQKLYLEIDKEWPRGNRPGLQTGELDKIVIFPLSTL 326

Query: 106 --------TVEIELPVPDTLPTSAESSGSSSSTWVELFIESVHI 127
                    VEIELP+PDTLPTSAESSGS+SSTW+EL+ ESVH+
Sbjct: 327 SVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHV 370

[Close]
BLAST of Spg005426 vs. ExPASy TrEMBL
Match: A0A5D3DR18 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00320 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.5e-20
Identity = 62/104 (59.62%), Postives = 69/104 (66.35%), Query Frame = 0 

Query: 46  GFSSKPGGSLVFSDVLSILE---CTSRIRSSI---WPRGNRPSLQTGELDK--------- 105
           GFSSKPGG LVFSD LSI E      ++   I   WPRGNRP LQTGELDK         
Sbjct: 267 GFSSKPGGFLVFSDALSIQEVHKSNQKLYLEIDKEWPRGNRPGLQTGELDKIVIFPLSTL 326

Query: 106 --------TVEIELPVPDTLPTSAESSGSSSSTWVELFIESVHI 127
                    VEIELP+PDTLPTSAESSGS+SSTW+EL+ ESVH+
Sbjct: 327 SVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHV 370

[Close]
BLAST of Spg005426 vs. ExPASy TrEMBL
Match: A0A5D3CJX3 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00520 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-19
Identity = 61/98 (62.24%), Postives = 69/98 (70.41%), Query Frame = 0 

Query: 46  GFSSKPGGSLVFSDVLSILECTSRIRSSIW--PRGNRPSLQTGELDKTV----------- 105
           GFSSKPGG LV SD LSILE   ++   ++  PRGNR SLQTGELDKTV           
Sbjct: 32  GFSSKPGGFLVLSDALSILE-IHKLNQKLYLGPRGNRLSLQTGELDKTVIFSLSTLSVLR 91

Query: 106 ----EIELPVPDTLPTSAESSGSSSSTWVELFIESVHI 127
                IELPVPDTLPTSAESSGS+SSTW+EL+ ESVH+
Sbjct: 92  DNNAVIELPVPDTLPTSAESSGSNSSTWLELYFESVHV 128

The following BLAST results are available for this feature:
BLAST of Spg005426 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0052218.14.8e-2157.63uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0066795.16.3e-2171.08uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa] >TYK... [more]
TYK25935.13.1e-2059.62gag/pol protein [Cucumis melo var. makuwa][more]
KAA0040194.13.1e-2059.62gag/pol protein [Cucumis melo var. makuwa][more]
TYK11835.12.6e-1962.24uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa][more]
BLAST of Spg005426 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg005426 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UAH62.3e-2157.63CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3DWP33.0e-2171.08Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T9P71.5e-2059.62Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G000... [more]
A0A5D3DR181.5e-2059.62Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G0032... [more]
A0A5D3CJX31.3e-1962.24CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
BLAST of Spg005426 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg005426.1Spg005426.1mRNA