Spg005327 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg005327
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold6: 36395767 .. 36397843 (+)
RNA-Seq ExpressionSpg005327
SyntenySpg005327
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGCGCACATTTCAAGCTGCTTATCTGAAGAGTGAGACCAATACATGGTTGGGCTTCATTAGATTAGGTTGCGCCTGCTTCCGACTACTCATGATTCAACAGTATCTCGAGACTGAGTGCTTCTGATATTCGCAATTCTTCGATCTTTAAGTATTGATGTTGGAAAAATCATTTCGAGTGAAATTTATAATTGCTGGCGTAAAAAGGTGGGGAAGCTGTTTTTCCTGAACACGATCACGATGTTGTGCAGCAGGGCAGGAGTGCCCACGGTTCCAGAGGATGTGATTTTTCTTGACAAGGGAATAATAGATACGCCTAATCTGGCTCGGCTTCAGCGTACGCAGGAGGCATGCTAGGGTGGGCTAGTGTGTGGAATCCATCAAATCCTAGAGCAACTGGCACTGTCGGCCAGTAGGCAAGAGTTTGCTGAAAGGCAAGCTCAAACTTACTGGACCTATGCTAAGAGGAGAGATGACACACTTCGAAGGGTCTTGCAATCCAATTTCTCAAAACCATATCAGGTCTTCCCTATGTTCCCTGATGATTTATTTAACCCCTGGATTCCGTCCCCACTAATGGAAAGAGAAGAAGAGGATGATGAAGAGCAAGGTGAGGAAGATTGATGAATATGATGACCTTGAGCGAGCATTATTTTTGTTTCTCTATTTTTGATTGCTCGCGTATTTGTGACCCCAATTTCTGTTGATCTTATGTTTTCTTGTTTTTAATTTTTCTGTTTCTTGGCCATCAAAATATTTGCTGCTGTAATTTCTTTTTCTATGTTTTTAATGAAATTTTCAAGCATTTATGTTCTATAAGCACTGAGTAATTCTAACTTAACTAATTTTCTTCTGAATTTTTTAAGCTTGGACTGGTTAAGCTTAATTAGATCAAGGTATTCTGATCTCCAGAAACCTTTTGCTTGAGCATTTCTTCTAGCCTAGTCGTTGCTGCGGCAAGAAGATTCTGAGGTAGTGTTGACTTATGTGATCCACTTTAAGCTTACTTCTAGTCCCACGCTTGGTTTGAAAATTCATATAGAAATATTAAGTTTTGGGGTATAAATTCTTAGTATTAATAATTCATTTAGGACAATGAATAATTCAAGTTTGGGGGACTTTTTGCTACGCCAATTGTTTTGCTCGAGCATTCCTCTCCTTCATTAAATAATTTGCTAGGTTGTTGAGTAACCAGGGACATTTGTGATACTCATTGTTTGTCTTTGCGTCAAAAGATAACCTAGGAAATATGAAAAATGAAAAAATTATTTCCTAAAAAAGTTGATTGTTGAAAATTTTGCTGAGAAAATTCATGGAGCAAAAGTTTTGAAGGATGAATGATAATCCAACAGTTTTTCTGTTTCCCAAGACTTAGGTGAGCTTCATCATAAAATGTCGCCATTCTGAGGAGCAAGAGATAGAATAACTAAGGAATTTTTAGCTTTACAATGAGTATTTAGCCTAGTTGGTGATGAGTTTGAGGCAAGGGTATACTGCACCATAAAGTGGGTCATCCCATGCTTAAGAGCTTATGACTGTAGGGCTGCTTTAAGTCTGAAAAACAAAAATATAAACCCCTTAAAAATGTGTTTTAATATGTCTGATAATAGAGCTAGGCTGTGGCAAGTTCTTAGCATTGAGTTAAAAGTGGTGATTATTTGTCCATGCCGGAAGAATTATTTTGCTGCAGCAGAGCTTGGTTTTGCAGAATGCTCAGGTAGAGGTTGAAGGTAGTGTTGGATTATCTGTTTTGATTAAGCTATGCTTTGTCTAACGTTTTGAATTCTTAAGGGAAGGTTGGTTAGTATTGCTCGGGACGCGCAATAGTTCAAGTTTGGGGGTATGATAACTCTCCAAAAGGGAGTTATTTAGACCTTATTTCTATAGTGATTTGTGTGTCTTTTGTGCAAAATAGAGTTGCTTTTAGATATATATTATATGTTTTAACCCATTTGGAAGAATGGATGCTTTGGAAGTTATTTTATGCAGAATATATTACTGAGCTACTTGAGGGAGCAAAATCTGCGCTGCAGCAAAGCAGGGAGCAAAACTGCGACGTCACAGCTCGTTAG

mRNA sequence

ATGGAGAAGCGCACATTTCAAGCTGCTTATCTGAAGAGTGAGACCAATACATGGTTGGGCTTCATTAGATTAGGTTGCGCCTGCTTCCGACTACTCATGATTCAACAGTATCTCGAGACTGACAGGGCAGGAGTGCCCACGGGTGGGCTAGTGTGTGGAATCCATCAAATCCTAGAGCAACTGGCACTGTCGGCCAGTAGGCAAGAGTTTGCTGAAAGGCAAGCTCAAACTTACTGGACCTATGCTAAGAGGAGAGATGACACACTTCGAAGGGTCTTGCAATCCAATTTCTCAAAACCATATCAGGTCTTCCCTATGTTCCCTGATGATTTATTTAACCCCTGGATTCCGTCCCCACTAATGGAAAGAGAAGAAGAGGATGATGAAGAGCAAGCTAGGCTGTGGCAAGTTCTTAGCATTGAGTTAAAAGTGGTGATTATTTGTCCATGCCGGAAGAATTATTTTGCTGCAGCAGAGCTTGGTTTTGCAGAATGCTCAGAATATATTACTGAGCTACTTGAGGGAGCAAAATCTGCGCTGCAGCAAAGCAGGGAGCAAAACTGCGACGTCACAGCTCGTTAG

Coding sequence (CDS)

ATGGAGAAGCGCACATTTCAAGCTGCTTATCTGAAGAGTGAGACCAATACATGGTTGGGCTTCATTAGATTAGGTTGCGCCTGCTTCCGACTACTCATGATTCAACAGTATCTCGAGACTGACAGGGCAGGAGTGCCCACGGGTGGGCTAGTGTGTGGAATCCATCAAATCCTAGAGCAACTGGCACTGTCGGCCAGTAGGCAAGAGTTTGCTGAAAGGCAAGCTCAAACTTACTGGACCTATGCTAAGAGGAGAGATGACACACTTCGAAGGGTCTTGCAATCCAATTTCTCAAAACCATATCAGGTCTTCCCTATGTTCCCTGATGATTTATTTAACCCCTGGATTCCGTCCCCACTAATGGAAAGAGAAGAAGAGGATGATGAAGAGCAAGCTAGGCTGTGGCAAGTTCTTAGCATTGAGTTAAAAGTGGTGATTATTTGTCCATGCCGGAAGAATTATTTTGCTGCAGCAGAGCTTGGTTTTGCAGAATGCTCAGAATATATTACTGAGCTACTTGAGGGAGCAAAATCTGCGCTGCAGCAAAGCAGGGAGCAAAACTGCGACGTCACAGCTCGTTAG

Protein sequence

MEKRTFQAAYLKSETNTWLGFIRLGCACFRLLMIQQYLETDRAGVPTGGLVCGIHQILEQLALSASRQEFAERQAQTYWTYAKRRDDTLRRVLQSNFSKPYQVFPMFPDDLFNPWIPSPLMEREEEDDEEQARLWQVLSIELKVVIICPCRKNYFAAAELGFAECSEYITELLEGAKSALQQSREQNCDVTAR
Homology
[Close]
BLAST of Spg005327 vs. NCBI nr
Match: EXB62771.1 (hypothetical protein L484_000343 [Morus notabilis])

HSP 1 Score: 55.8 bits (133), Expect = 4.7e-04
Identity = 29/80 (36.25%), Postives = 44/80 (55.00%), Query Frame = 0 

Query: 55  HQILEQLALSASRQEFAER---QAQTYWTYAKRRDDTLRRVLQSNFSKPYQVFPMFPDDL 114
           H+I  Q    A   E  +R   Q Q YW YA++RD+ L++ LQ NF+KP   FP FP+++
Sbjct: 3   HRITLQEIQQAEMMELMQRMHKQQQQYWAYAEQRDNALKKSLQKNFTKPVFPFPEFPEEV 62

Query: 115 FNPWIPSPLMEREEEDDEEQ 132
             P +         E++EE+
Sbjct: 63  LEPVVSEDNASVHPEEEEEE 82

[Close]
BLAST of Spg005327 vs. ExPASy TrEMBL
Match: W9RB68 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000343 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-04
Identity = 29/80 (36.25%), Postives = 44/80 (55.00%), Query Frame = 0 

Query: 55  HQILEQLALSASRQEFAER---QAQTYWTYAKRRDDTLRRVLQSNFSKPYQVFPMFPDDL 114
           H+I  Q    A   E  +R   Q Q YW YA++RD+ L++ LQ NF+KP   FP FP+++
Sbjct: 3   HRITLQEIQQAEMMELMQRMHKQQQQYWAYAEQRDNALKKSLQKNFTKPVFPFPEFPEEV 62

Query: 115 FNPWIPSPLMEREEEDDEEQ 132
             P +         E++EE+
Sbjct: 63  LEPVVSEDNASVHPEEEEEE 82

[Close]
BLAST of Spg005327 vs. ExPASy TrEMBL
Match: A0A2P5DXM3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.6e-04
Identity = 23/56 (41.07%), Postives = 35/56 (62.50%), Query Frame = 0 

Query: 56  QILEQLALSASRQEFAERQAQTYWTYAKRRDDTLRRVLQSNFSKPYQVFPMFPDDL 112
           Q L+ L    S+QE   +Q Q +W Y+K RD  L++ LQ+NF++P   FP FP ++
Sbjct: 229 QQLKALEQRLSQQEHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPAFPQEI 284

The following BLAST results are available for this feature:
BLAST of Spg005327 vs. NCBI nr
Match NameE-valueIdentityDescription
EXB62771.14.7e-0436.25hypothetical protein L484_000343 [Morus notabilis][more]
BLAST of Spg005327 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg005327 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
W9RB682.3e-0436.25Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000343 PE=4 SV=1[more]
A0A2P5DXM36.6e-0441.07Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE... [more]
BLAST of Spg005327 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg005327.1Spg005327.1mRNA