Spg005284 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005284
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Pentatricopeptide repeat (PPR) superfamily protein
Location	scaffold11: 34852313 .. 34861152 (-)
RNA-Seq Expression	Spg005284
Synteny	Spg005284

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACGAGGCGATGGCGGCAGCGACTTAAACCAGACGGCCCAGCTCCAACTTCGACGGTGGTGAAAACCCAGAGACGTGTGTATCGGTTTGACTTCGGCGAAAACCCACGAGAGGACGAGCGCGATGGCGGCGGCGACTTAAACCAGACGTTCGACTTCGACGGCGGCGTTCGACTTCGACGGCGGCGTTCGACTTCGACGGCAGCGTTCGACTTCGACTTCGACAGCGGCGTTCGACTTCGACTTCGACGGCGGCGTTCGACTTCGGTGAAAACCCACGAGAGGAGAGGCGTTTTTGTTTGAGTGAAACGCGTATGTGATTTGAAACCCTAGATTTGACTTTTGAAAACGCGTTTTTTCTTTCCTTTTTTTTTTTTTTTAAAAATGAAACGCGTGATAATATCACGTGTATACCAATAATAAAACGCGTGATATGTGGGTTTGGGAAAAGAAGGGAAGGGTTCGGTTCGGTTCGGTCAGCATTAAACTTGTAACTAAACCGGACCGGTTCGGTTCCTTACACCCCTACTCATTGGGCCCGCTTGGATATTTGGGCTGGGTCAAGCCAGTTCGTAAAGAAGCTAGTTCGGGATTGCTTACTGAAAACGAACCCCCATCGAAAAAAGAAATTCGATTGGGCGCTAGCTTAGGGGCCCATTCCTAAAGCCATGAGAATTGGTTAGAAAAACGTTATCCGTTACTATATTGAGGAGTAAGGAAAGGGCTTCCATGATAATGAGGCCCTTCTTGCATGGGCTTGGGTGATGGTTCATGTAGGCTTGAGTCTTTCATTCGGGCCTTCTTGAAGATGGGCACCCCGGGGCCAATGCGTATAAGCTTGGGCTTTCTTAACGTGGCTCATTTGACGACTCAGTACATGGATGTCACGAGTCTAATGGCATAGAATAGTTGGTTGTACAAAGTTTGTTTGTTCATACAGGCAGTGTGATTGAGGGATCTTTTGTTTGCTTCGAAAGGTAGTCAGAGCCAGCCAGTTTTTCATTAAACAGGCATGCGAGTCTTCAACTGCAGAAAAGTCGTGCGGAAAACTAGTCAGAATTGTGCCTGCCATCCAATTCGTGACGTGGATGATCTGCCGAATCCATTGCTGACTTCACCACGATCGATTAGGTGAAACGGTTTTGCAAAGTTTGTTTGTTCATACAGGCAGCGTGGTTATAGTAGTCAGAATTGTGCCAGCTATGAAATTCGTACTGCATGGCGAGATTACTCTACCACTCTAGAAATGGAGGCTCCTTCACTCCATCAAATTCAAATCAAAGAAATTTAGTACTAGCAACGTATGGCTATGGATGCTGCAAACAGGCTTTCTGCAATTGCTGCCGAAATGGGGCAGCTAAATAATGAAATTCAAGAGCACCGTAGGGTGCTAAACTATCTTTTTAGGAGTGTGAGAACAATCGATCCCGCTCGGAAAGAAGCGCGCATTCGCGCTTTCAGACAACGGGTCGAGGATATGGAGGGGAGGCAGCAAGCACTCATAGTGCAGGCTGTCACCCACGGTCCCGGGGAGATTGACTAGAAGAGTCCGTCGACTCTTTTGTTTAGATTATCTATCTGTAGACGCAAAGTAGTGTGTTTTAATGTATGGTCTTCTTTTTCTTTGTTTGGTGGAGATCTACTCCTATGCGTTGTGTTTTGGTTTGGTTTTCTTTGTTATGTTTGCATGTATGGTAAAACCCCTAGTGTAAAATGTTTAGTTTACTACTTAATGCTATGCTAATATGTTTATGCATAATGGCTTGCTTTGACGAATCTTCTGAGGCTTCATCGATCGGGAACGTCCCTCGCAGACATGCTACGTCTCGAATGCAAAGAGGACGGAAAGAAATTTATAGATGCCTTATACGACTGTTGATTTTTGTGCTTTTCTGAAGAGGGATCGAGATGCTATGTCCTTCCCCTTTTTTAGTTAGAGTATCTATTTATATGAGTCAAATAATATCTTTTTGTCGATAGGGAAAGCTAGTCTTCTTACCGCTCCGTGGGAAAGACATCCCTTTCTATTCTCCGATCGGAGAATGCGCTGCTCAGAGGCAATCAATTAAATTTATTCTTCTAAAAAAGAACAATCTCAAATAGACCAAGATCAAATTGAAGAAATGATTCGATACTCATACTTTTTTGCTTCTACTAGATGAATTCATACTCTTTCTATTTTCTTCCAATTCAAAAGCAGCAAACTCTTCCCCATGAGACAACCCCATTCAAACATCCAACGAATGAAGATAAACGTTCATTCTAATTCTATTCCGACAGATTGAATTCTCCTTTACCAATCTATCTAAGCTAAAGGTGTCTCTTGACCTTTCAAGTAAGTGTCGTTTGAATCCTAGAAATTTATCCCTTCAAGATTTTTTACAAATTTAGTGGATCTAAAGAGGGTTAATCAGGTCATGGAAGATGAAAGTCTCTTTTTACCAAATGAAGATGATTTGGTGATGGCTATCAAGGATTCAAAGGTCCCTTCGATGTATGATAAGAATCTCAATTCAAGTGGTCTTGATTTGTTAAAAAGACATTTCTTTGGATGGGCATGCAGATGTTAATTCCCTTGGTTCTAATGGAGGTTCTATGGTATCTCCTCTGCAATCGATGCCAAGTTTAATAAAACCCTTCCCTTTTCATTATTCTAGAAGAAAAGAGTTCCTCCATCATTGATCATTCAAAGTCTAATTTAGATTCTGTAGAGGAATCTCGTGTTCGTCTTTTGACTCAATCCACAAATCAATTGGAGTCTCCCACGAAAGGTTCTAAGATGCAAGAGACTTTATACCCTACCATGATTTTTAGTCAATCGCAAGTTTCTCTTCCTAGTTCTAACATACTATTCACCAAAAACAAGTCTCTCTTCTCCTAAGAAGAATCCTTCTTGTTTTGATTCGGATGGAGAATCGGATGTTAGTATGAGCAATGTAGAGTCAATTTGTCATATTTTGGAATTTGAATTGGTTGATCAAGTTGAAGACGATTCATTTGCTGAAGCTTTTGAAAATTTATTTGAAGTTAACGTTCAAGGTGTAAATAATTTTAAGGGAGTAGTTTCTTTGGTGGCTTCTCCTCAAATCCCAACCAAATTTTCTTCTCTGATTGAGTTATGTGGGTTACAGATGCGCTAAATACCTAATTTATCTTCGGCAGTTAAAGCTCTTTAATGGTTTTCTCGTTAGCTCAGTTTTGAATTTCTCTCAAGGTTTAGTCTTTTCAAGTTGGGCTCTCGTCATATTTCATTGGTGCAACTTCCATTGGTGGTGGAGTTTTTTCGAAAATCCTCTTTTTCCTTGCTTCCTTTTCAGTTGGTCTCTTCAGCCGTTTGGTGGTTTTTATCTTTTCTCCGATTTTGATTGATTTGTTGTTTGTTTTCTTTGTTGGTTTTTCAGTTATAGCTTTCCTTTAGTCTTTTTTTGTGGTTCTCTTAGTTCTCTGGTGGTCTTCTTTTCTAGTTTTTCTTTTTCTTTGGTTTGTATCTTCTTCTTTCCTTGGTGGTGTTTTTATTTTTGAGCATTAGTCTCTTTTCATTCTTTTTGTTTCTTGAAAAAAAAAAAAAACCTCATGAATACTGTTAGGGATTTCAGTATTAGTGATGGTAAACAAAAGATATTAATAGGATGTATAGTTATGTCTAGGTGACTAGTGCAAGATCTTACCCCTTTTTGTTTATAGGTAATAATGATTATCTATATTTTAACAGAAGGAATACCACAATAATTTGTTCTACATGTAGAATCCATTGATGAATCCTCATTTTATAATAACATGAATCTCTGCTTGTGGTTTTGAATCAGGGTTTGACTTATGAGAAGAACTAGAAGGTTCTACATTTGCACGGTTTTTCATTTTTCCTTCTGATATAAATAGAATGATCACTGATTCATTACTCTGTGTTTAAGTATATATTTCCATGTTTTAGCTTCTAAGCACTATAGGCTTTTAGTATTGTTGGAGTTCTTCCCAGTCATCTCGTCTTTAACCCCAGGTTTAGAAGGTGAAACCTTGAGCTTTGAGTCCAAAAGTGATAGAAGCAGCCAAAGATCCTCTCTCTACAGGTTGGAGATAATGAGAATTGAGCTCTTCTCTGTGTATGGAGTTCAGGTGTGTATTATCATGATTTTCCTTTTTCCCTACATTGCTGGCTGTGGTAATTTGGGTCCTCATATATCAATATTTATTTGATCTGCATTAAGGTCAGCAAGATCAGAATGCCAATAACGAATGTAGTATTGGCTATTTATCATATCAAATAGTGGAATTGGAATATTAAGCAAAATTTTTACTAAGAAAAGAGTTACAAAATGGAATGGTAGCATGAAGCAAAAGGAGAACAAAAATAATTCAGTAAGTTCTGGCATTGGTAACTTAGACATACTATTTTTGAATGGGTTTTTGCAGTCTGAAATTAGTTTGCAAGATTTTCAAGATGCTGAACCTGATATCCTTGTGCACTCTACTGCGGAAATTGTAGAGCGTTTCAGTGAGAAGGGTATTAGGTGCAATATTGCCCTTAAAGCTCTTTGCAAAAAGAGGGGTCTTCATGTTGAGGTAGTTCTTTTTCCTTATTTTTGTTACGATGTTTTGCAACAATTTATTTTCTTATAATTTCGTTCACAATATGACAACTTGTTCTTGAATATGTAATTTTGATCCATCTAAGAATTTTTAAAATTATTTTACTGAAAGAATGTCCTAGTAGGTTTTTTGGTTTCATTGCATCCCCTCCCCTCTCCTCCTTCCACCCCACCAAAAAGTTAAAAAAAAAAAAAAGAAAAGAGAATAAAGAAATAAAGTACATGCTGTAACATTATATTCTAGTGGTTAAAATTTAATGTGTACACAAATTGAAAGCCACTCCTATCATGTAAATCTCCTTTGGCTGGTTCCAATTGCGACCTTGGGATTTTAACATCAATATTGGTTCAAGAAACACGGTACTTTTGTCCATTTATTTCATGGATGTTGGACTAGGTGAAATGTTTTGGTCATACCCTGTTTGAGATACTTTGGTTGGCCTATTGCCTTGTTTGGAGATCCCTTCTTGTTAATTGCCTTGGTTTTGCTGGACCATGCATACAAAGGGAGAAAGAAATAATTCAGAGGAACTTCATCAGGACATTCCTTTGGTCTAATTGGAACAAAAGGAAAAACTGGATTTTTTTTTTTTAAAAAAATTTATTTATTTTATTTTTAGTGTTTCTGGCTTTATCTTGGTGTAAAATGCACCCTTTAACGATTATGGTTGAAATTTTCTTGCTTCCTGTTGGAAAAGCTTTTTGTAAATTCTTTGGATAGGATCTCCTCCTTTTTGTTATTTCATATCATCAATGAAATTAGAGGATGTTTCTCTCTCAATTTTTTTTTTTTGGTACGCTGTGGGTGCTGTAAGCTTGGGCTTGACTGACCTCTGAATTTGAGAGTATTGTCCAATTTCTAAATAAAATATTATACAGCAAGAGACTATGTGCTGTAGTTTCTTTTGGATGGCTCGGGCAGATTCTAGCAATCTGGGATGAAAGATAAGTGAAGATGAAGGATGCCCAAAGGGGGCATTCGTCATTGTTGTAAATTTGGGGATGGAAAACAATGTTGGGTTTCTTCTAATATCTACAGACCTCCAAACTAAAGGGGAAGTAACGATATTTGGGAGGAACTTAATAGCGTATTTGGAATTTTGTATATTGTGTTGCTCCATGGTGTAGGGGAAGCAAATTTATGCAATTTTGATAGTCTTTGAAAAATTGAGAAAGGGTAAAAGAAGAATAAGCATGAGGAAGTTCTATGAGCTGATTGAAGAAACATGTCTTAAAAGAGATTCCTTTGAGTAATGGGATTTTTCATGGTCGGATGCAAGAGGATCTCTCATTCATTGTTTGTTGGATAGATTCTTTTTGCAATAGAAATGGATCAAGCTTTTTAAGGACTGAAAGCTTAAAAGAACTCGAACCATGTCAAGTCACTCGCCATACTTGAAATCTGGAACGTAGTGTGGGGAGCATCACCCTTTCACTACAAAGTTTCATTAGATTTCTCAAAGCTTTATTGATAAATGGTGAAAAGAGAATTCTTCAGGATGGTCTATGAAGAAACTTGGAGATATTAAAAAGCAGCCTAAAAGTTGTACACAGTGATGGACAATGTATCATTATAAAGAAAAGAAATTGAAGAAAGGATTTGTATTTGCTGGACATTAAGGAGGAGGCCTCATCCTTATCTTTGGATGAAGTGGAAACCAGAACTTTGGCAAAAATAGAACTCTATGAGTTAGTTCTAATGAGGAGAGGAGGTTGCTTCAGAGAAGTAAAATCATTATGCTTAGAAACAAGAAAAAATTTGCAGGTTTCTTATCCAAAAGGAAAAAAAAAGAAGAAAAATTTTAATATCTTAGTTGATTTCAGGGGGTCAGTCTTGTTAAAGAAAGATCTAGATGATGAGATCATTGATTTCTTCAAGAAGCTGTATAAAACGAAAAAGGGGTAGAGAATTTCAAAAAAAAAAAAAAAAAACAAAGAAAAAGAAAAAGGGGTAGAGATTTTTGTACCAGAGGGGGTTTAATTAGATTTTTAGAAATAATCAGTGAAAAAGAAAAATCTAGATAGAAAATATGTTAGGGACCAAGGTAGTATGGGATGCCTTTGTCCCACATTGGAAAGATATGGGCTCCTAATAGGGTATATAAGTGGGTGGTTGGTTCTCCCTCCTCAATCGCCTGGCTTTTGGGGTGTGGCTCTCCAACTACTTAGATACCTAACAATTGGTATCAGAGCCAGTGGTCGACGACTCCAGAGAGGAGTGGCGGCAAAGGGGCTGATTGGAACCAGCTGAGTGAAGTGTCGCCGTGCACAGCCACCGAGACGTCAGCTTTCCGAGGAGGGGCAATTGTTAGGGACCAAGGCAGTATGAGATGCCTTTGTCCCACATTGGAAAGATATGGGCTCCTAATGGGGTATATAAGTGGTTATTTCTCCCTCCCCAATCGTTTGGCTTTTGGGGTGTGGCTCTCCAACTACTTAGATACCTAACAAAATACTAACAAGGCCATCGCCCATAATGGCATCGATATTCATACTATGAAAACTTTATCCTAATTTTCAACAATTCAAATAGGAAAAGAAGCATCAATATCTTCTTCATTTTTTTTAATATCACTCACCTAACAAATTTCATTGAAAAATCGTTTAACCCAACCACATTTGATTGCCAAGAGAACTCATAGGATATAAAATCCTAAGTAGGTGATAGCTATGGTTTGAACCCATTTCTTCTAAGTCTTTACTTCATTGGGCATAATGGCTGTTAGGCCAACCTATGATAGTTGCATCATCTACAATTATGATACACTCTAACTCAAAGTTTAAATTTATGTTCATTGGCCAACTTTTCGTAATCAAATCTTGCCATTTACTGTCCTCTCACTCTTTTGTCAGTGATTTAATTCTAGCTCCTCACCCCTCTGCCCTCAGGCTGTGTTCTGGTTTTTTGTTAATACAATTCTGTTTCTTATTTAAGAAAAACTTCTGGCCGTTTTACCTGCTCTAGTGGGCATGGGATATCGTTTATCTTATTCAGTATATGCCTATGTGACCTTTGATGCATCTGATTGAAACTCTTTAGATCGACTAGATAGTCTGCCAAATTAGAGTTACAAATAACTTCTGCAGATATGATAGTGTGTGATATATGCTTTTCAGGATGCCATTTTGATCGGAGTCGATAGTCTTGGCATGGATGTGAGGGTATGTTTTGGAACAGAAGTACGGACGTTCCGATTTCCCTTTAAAATCCGGGTAAGCCATCTACACTTCATGGTCTATAAGGAGATTTATAACCTACAAAGTTTTACGTATGACACCTTCTACCAAGGATGAACATTGTACCTTTTAACTAGTTGCCTTGTTAAAAGTAATCCATTTGCTATGTTGTTATTTCAGGCAACATCTGAAGTTGCAGCAGAGAAGCAGATTCAGCAACTCTTGTTCCCACGATCTCGTCGTAAAAAATTACGAAGTCATGGGGATGGATTGAGAGATACTGTGAGTTTTTAGAACACCCTGTGCGTTATTTTGAGATTTGGATCGTAGAAATAAATTTCAAAGCTTAAGGAGACTTCTTTACTCAAATCTGTCATTAGTCTTAGTTTCAGAATTGTACAGTTCAAGTCGATAATTTATCCTCTGTTTTTTTTATATTCCCTTGTCCTCCCATATTTTTCCTTGGTAGTACCCTCTTGGAGATTCATTCTCATTAGTAATTAATTAAGGAAAAACCAGAATAAAATCGTTATCAAACGAGGTCGTAGTTAATGGCATCCTTGCTTTTGCTGGATGTGTAAGACAGCTGTTTTGACACAATTGTTAGTAATATATTTTTTTTGGAAGTTATCTAATACCTTATTACTATAATGACTGGAACAATTTTAGTGTAAGGATCTATATTCTCATTTAGTACTAGATCTAGATACCATGTTTTGTTTCTTAGAAGGTCGCGAGACGATATTTTTTATTTATTTTTTTAATTTTTTTTGTAAAGATTAATACAATTTTCACTCACTAATTTTCTATCATTGAAGTTGCTGGCATAATTTGTATATGCAAATGTCGTGATTGAGTTGCTAATTGCTTGACTTGATGATAGTTTAAAATTTTGACTGGAGCCAAGGATGGAAGATAGACTTTGTGAAGTTTTGTAGTCTTGGCTGAAATTGTGTTATTGCTAAGTCGTCTTCAAAAGACGGACTTCCCTCAAGGAAATCAATGACGATTATTTTTCGACAAAAATGGACAATACAGTTGGTTTTGTAGTCTTTTAGGTTTGTGTTTATTTGG

mRNA sequence

ATGAAGACGAGGCGATGGCGGCAGCGACTTAAACCAGACGGCCCAGCTCCAACTTCGACGGTGGTGAAAACCCAGAGACGTGTGTATCGGTTTGACTTCGGCGAAAACCCACGAGAGGACGAGCGCGATGGCGGCGGCGACTTAAACCAGACGTTCGACTTCGACGGCGGCGTTCGACTTCGACGGCGGCGTTCGACTTCGACGGCAGCGTTCGACTTCGACTTCGACAGCGGCGTTCGACTTCGACTTCGACGGCGGCGTTCGACTTCGGTGAAAACCCACGAGAGGAGAGGCGTTTTTGTAGTCAGAGCCAGCCAGTTTTTCATTAAACAGGCATGCGAGTCTTCAACTGCAGAAAAGTCGCTTTCTGCAATTGCTGCCGAAATGGGGCAGCTAAATAATGAAATTCAAGAGCACCGTAGGGTGCTAAACTATCTTTTTAGGAGTGTGAGAACAATCGATCCCGCTCGGAAAGAAGCGCGCATTCGCGCTTTCAGACAACGGGTCGAGGATATGGAGGGGAGGCAGCAAGCACTCATAGTGCAGGCTATTGAATTCTCCTTTACCAATCTATCTAAGCTAAAGGTGTCTCTTGACCTTTCAAAAGAAAAGAGTTCCTCCATCATTGATCATTCAAAGTCTAATTTAGATTCTGTAGAGGAATCTCGTGTTCGTCTTTTGACTCAATCCACAAATCAATTGGAGTCTCCCACGAAAGCTTCTAAGCACTATAGGCTTTTAGTATTGTTGGAGTTCTTCCCAGTCATCTCGTCTTTAACCCCAGGTTTAGAAGGTGAAACCTTGAGCTTTGAGTCCAAAAGTGATAGAAGCAGCCAAAGATCCTCTCTCTACAGGTTGGAGATAATGAGAATTGAGCTCTTCTCTGTGTATGGAGTTCAGTCTGAAATTAGTTTGCAAGATTTTCAAGATGCTGAACCTGATATCCTTGTGCACTCTACTGCGGAAATTGTAGAGCGTTTCAGTGAGAAGGGTATTAGGTGCAATATTGCCCTTAAAGCTCTTTGCAAAAAGAGGGGTCTTCATGTTGAGATACCTAACAATTGGTATCAGAGCCAGTGGTCGACGACTCCAGAGAGGAGTGGCGGCAAAGGGGCTGATTGGAACCAGCTGAGTGAAGTGTCGCCGTGCACAGCCACCGAGACGTCAGCTTTCCGAGGAGGGGCAATTGTTAGGGACCAAGGCAGTATGAGATGCCTTTGTCCCACATTGGAAAGATATGGGCTCCTAATGGGCTCCTCACCCCTCTGCCCTCAGGCTGATGCCATTTTGATCGGAGTCGATAGTCTTGGCATGGATGTGAGGGTATGTTTTGGAACAGAAGTACGGACGTTCCGATTTCCCTTTAAAATCCGGGCAACATCTGAAGTTGCAGCAGAGAAGCAGATTCAGCAACTCTTGTTCCCACGATCTCGTCGTAAAAAATTACGAAGTCATGGGGATGGATTGAGAGATACTGTGAGTTTTTAG

Coding sequence (CDS)

ATGAAGACGAGGCGATGGCGGCAGCGACTTAAACCAGACGGCCCAGCTCCAACTTCGACGGTGGTGAAAACCCAGAGACGTGTGTATCGGTTTGACTTCGGCGAAAACCCACGAGAGGACGAGCGCGATGGCGGCGGCGACTTAAACCAGACGTTCGACTTCGACGGCGGCGTTCGACTTCGACGGCGGCGTTCGACTTCGACGGCAGCGTTCGACTTCGACTTCGACAGCGGCGTTCGACTTCGACTTCGACGGCGGCGTTCGACTTCGGTGAAAACCCACGAGAGGAGAGGCGTTTTTGTAGTCAGAGCCAGCCAGTTTTTCATTAAACAGGCATGCGAGTCTTCAACTGCAGAAAAGTCGCTTTCTGCAATTGCTGCCGAAATGGGGCAGCTAAATAATGAAATTCAAGAGCACCGTAGGGTGCTAAACTATCTTTTTAGGAGTGTGAGAACAATCGATCCCGCTCGGAAAGAAGCGCGCATTCGCGCTTTCAGACAACGGGTCGAGGATATGGAGGGGAGGCAGCAAGCACTCATAGTGCAGGCTATTGAATTCTCCTTTACCAATCTATCTAAGCTAAAGGTGTCTCTTGACCTTTCAAAAGAAAAGAGTTCCTCCATCATTGATCATTCAAAGTCTAATTTAGATTCTGTAGAGGAATCTCGTGTTCGTCTTTTGACTCAATCCACAAATCAATTGGAGTCTCCCACGAAAGCTTCTAAGCACTATAGGCTTTTAGTATTGTTGGAGTTCTTCCCAGTCATCTCGTCTTTAACCCCAGGTTTAGAAGGTGAAACCTTGAGCTTTGAGTCCAAAAGTGATAGAAGCAGCCAAAGATCCTCTCTCTACAGGTTGGAGATAATGAGAATTGAGCTCTTCTCTGTGTATGGAGTTCAGTCTGAAATTAGTTTGCAAGATTTTCAAGATGCTGAACCTGATATCCTTGTGCACTCTACTGCGGAAATTGTAGAGCGTTTCAGTGAGAAGGGTATTAGGTGCAATATTGCCCTTAAAGCTCTTTGCAAAAAGAGGGGTCTTCATGTTGAGATACCTAACAATTGGTATCAGAGCCAGTGGTCGACGACTCCAGAGAGGAGTGGCGGCAAAGGGGCTGATTGGAACCAGCTGAGTGAAGTGTCGCCGTGCACAGCCACCGAGACGTCAGCTTTCCGAGGAGGGGCAATTGTTAGGGACCAAGGCAGTATGAGATGCCTTTGTCCCACATTGGAAAGATATGGGCTCCTAATGGGCTCCTCACCCCTCTGCCCTCAGGCTGATGCCATTTTGATCGGAGTCGATAGTCTTGGCATGGATGTGAGGGTATGTTTTGGAACAGAAGTACGGACGTTCCGATTTCCCTTTAAAATCCGGGCAACATCTGAAGTTGCAGCAGAGAAGCAGATTCAGCAACTCTTGTTCCCACGATCTCGTCGTAAAAAATTACGAAGTCATGGGGATGGATTGAGAGATACTGTGAGTTTTTAG

Protein sequence

MKTRRWRQRLKPDGPAPTSTVVKTQRRVYRFDFGENPREDERDGGGDLNQTFDFDGGVRLRRRRSTSTAAFDFDFDSGVRLRLRRRRSTSVKTHERRGVFVVRASQFFIKQACESSTAEKSLSAIAAEMGQLNNEIQEHRRVLNYLFRSVRTIDPARKEARIRAFRQRVEDMEGRQQALIVQAIEFSFTNLSKLKVSLDLSKEKSSSIIDHSKSNLDSVEESRVRLLTQSTNQLESPTKASKHYRLLVLLEFFPVISSLTPGLEGETLSFESKSDRSSQRSSLYRLEIMRIELFSVYGVQSEISLQDFQDAEPDILVHSTAEIVERFSEKGIRCNIALKALCKKRGLHVEIPNNWYQSQWSTTPERSGGKGADWNQLSEVSPCTATETSAFRGGAIVRDQGSMRCLCPTLERYGLLMGSSPLCPQADAILIGVDSLGMDVRVCFGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSHGDGLRDTVSF

Homology

[Close]

BLAST of Spg005284 vs. NCBI nr
Match: XP_038898170.1 (uncharacterized protein At3g49140 isoform X1 [Benincasa hispida])

HSP 1 Score: 272.3 bits (695), Expect = 8.1e-69
Identity = 156/241 (64.73%), Postives = 161/241 (66.80%), Query Frame = 0


Query: 255 VISSLTPGLEGETLSFESKSDRSSQRSSLYRLEIMRIELFSVYGVQSEISLQDFQDAEPD 314
           VISSLT GLEGETLS ESK DRSSQRS+LYRLEIMRIELFSVYGVQSE+SLQDFQ AEPD
Sbjct: 289 VISSLTTGLEGETLSLESKIDRSSQRSTLYRLEIMRIELFSVYGVQSEVSLQDFQGAEPD 348

Query: 315 ILVHSTAEIVERFSEKGIRCNIALKALCKKRGLHVEIPNNWYQSQWSTTPERSGGKGADW 374
           IL+HSTAEI+ERFSEKGIRCNIALKALCKKRGLHVE                        
Sbjct: 349 ILLHSTAEIIERFSEKGIRCNIALKALCKKRGLHVE------------------------ 408

Query: 375 NQLSEVSPCTATETSAFRGGAIVRDQGSMRCLCPTLERYGLLMGSSPLCPQADAILIGVD 434
                                                               DAILIGVD
Sbjct: 409 ----------------------------------------------------DAILIGVD 453

Query: 435 SLGMDVRVCFGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSHGDGLRDTVS 494
           SLGMDVRVCFGTEV+TFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSHGDGLRDTVS
Sbjct: 469 SLGMDVRVCFGTEVQTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSHGDGLRDTVS 453

Query: 495 F 496
           F
Sbjct: 529 F 453

[Close]

BLAST of Spg005284 vs. NCBI nr
Match: XP_038898179.1 (uncharacterized protein At3g49140 isoform X2 [Benincasa hispida])

HSP 1 Score: 263.1 bits (671), Expect = 4.9e-66
Identity = 150/234 (64.10%), Postives = 155/234 (66.24%), Query Frame = 0


Query: 262 GLEGETLSFESKSDRSSQRSSLYRLEIMRIELFSVYGVQSEISLQDFQDAEPDILVHSTA 321
           GLEGETLS ESK DRSSQRS+LYRLEIMRIELFSVYGVQSE+SLQDFQ AEPDIL+HSTA
Sbjct: 289 GLEGETLSLESKIDRSSQRSTLYRLEIMRIELFSVYGVQSEVSLQDFQGAEPDILLHSTA 348

Query: 322 EIVERFSEKGIRCNIALKALCKKRGLHVEIPNNWYQSQWSTTPERSGGKGADWNQLSEVS 381
           EI+ERFSEKGIRCNIALKALCKKRGLHVE                               
Sbjct: 349 EIIERFSEKGIRCNIALKALCKKRGLHVE------------------------------- 408

Query: 382 PCTATETSAFRGGAIVRDQGSMRCLCPTLERYGLLMGSSPLCPQADAILIGVDSLGMDVR 441
                                                        DAILIGVDSLGMDVR
Sbjct: 409 ---------------------------------------------DAILIGVDSLGMDVR 446

Query: 442 VCFGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSHGDGLRDTVSF 496
           VCFGTEV+TFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSHGDGLRDTVSF
Sbjct: 469 VCFGTEVQTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSHGDGLRDTVSF 446

[Close]

BLAST of Spg005284 vs. NCBI nr
Match: XP_022137915.1 (uncharacterized protein At3g49140 isoform X1 [Momordica charantia])

HSP 1 Score: 261.9 bits (668), Expect = 1.1e-65
Identity = 149/234 (63.68%), Postives = 155/234 (66.24%), Query Frame = 0


Query: 262 GLEGETLSFESKSDRSSQRSSLYRLEIMRIELFSVYGVQSEISLQDFQDAEPDILVHSTA 321
           GL+GE LSFESKSD+SSQRS+LYRLEIMRIELFSVYGVQ+EISLQDFQ+AEPDILVHSTA
Sbjct: 289 GLDGEALSFESKSDKSSQRSTLYRLEIMRIELFSVYGVQTEISLQDFQEAEPDILVHSTA 348

Query: 322 EIVERFSEKGIRCNIALKALCKKRGLHVEIPNNWYQSQWSTTPERSGGKGADWNQLSEVS 381
           EIVE FSEKGIRCNIALKALCKKRGLHVE                               
Sbjct: 349 EIVEHFSEKGIRCNIALKALCKKRGLHVE------------------------------- 408

Query: 382 PCTATETSAFRGGAIVRDQGSMRCLCPTLERYGLLMGSSPLCPQADAILIGVDSLGMDVR 441
                                                        DAILIGVDSLGMDVR
Sbjct: 409 ---------------------------------------------DAILIGVDSLGMDVR 446

Query: 442 VCFGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSHGDGLRDTVSF 496
           VCFGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSHGDG RD+VSF
Sbjct: 469 VCFGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSHGDGFRDSVSF 446

[Close]

BLAST of Spg005284 vs. NCBI nr
Match: XP_004152092.1 (uncharacterized protein At3g49140 isoform X2 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 4.6e-64
Identity = 146/234 (62.39%), Postives = 153/234 (65.38%), Query Frame = 0


Query: 262 GLEGETLSFESKSDRSSQRSSLYRLEIMRIELFSVYGVQSEISLQDFQDAEPDILVHSTA 321
           GLEGET + ESK DRSSQRS+LYRLEIMRIELFSVYGVQSE+SLQDFQDAEPDIL+HSTA
Sbjct: 289 GLEGETSNLESKIDRSSQRSTLYRLEIMRIELFSVYGVQSEVSLQDFQDAEPDILLHSTA 348

Query: 322 EIVERFSEKGIRCNIALKALCKKRGLHVEIPNNWYQSQWSTTPERSGGKGADWNQLSEVS 381
           EI+ERF+EKGI+CNIALKALCKKRGLHVE                               
Sbjct: 349 EILERFNEKGIKCNIALKALCKKRGLHVE------------------------------- 408

Query: 382 PCTATETSAFRGGAIVRDQGSMRCLCPTLERYGLLMGSSPLCPQADAILIGVDSLGMDVR 441
                                                        DAILIGVDSLGMDVR
Sbjct: 409 ---------------------------------------------DAILIGVDSLGMDVR 446

Query: 442 VCFGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSHGDGLRDTVSF 496
           VC GTEVRTFRFPFKIRATSE AAEKQIQQLLFPRSRRKKLRSHGDGLRDTVSF
Sbjct: 469 VCVGTEVRTFRFPFKIRATSEAAAEKQIQQLLFPRSRRKKLRSHGDGLRDTVSF 446

[Close]

BLAST of Spg005284 vs. NCBI nr
Match: XP_031740660.1 (uncharacterized protein At3g49140 isoform X1 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 4.6e-64
Identity = 146/234 (62.39%), Postives = 153/234 (65.38%), Query Frame = 0


Query: 262 GLEGETLSFESKSDRSSQRSSLYRLEIMRIELFSVYGVQSEISLQDFQDAEPDILVHSTA 321
           GLEGET + ESK DRSSQRS+LYRLEIMRIELFSVYGVQSE+SLQDFQDAEPDIL+HSTA
Sbjct: 291 GLEGETSNLESKIDRSSQRSTLYRLEIMRIELFSVYGVQSEVSLQDFQDAEPDILLHSTA 350

Query: 322 EIVERFSEKGIRCNIALKALCKKRGLHVEIPNNWYQSQWSTTPERSGGKGADWNQLSEVS 381
           EI+ERF+EKGI+CNIALKALCKKRGLHVE                               
Sbjct: 351 EILERFNEKGIKCNIALKALCKKRGLHVE------------------------------- 410

Query: 382 PCTATETSAFRGGAIVRDQGSMRCLCPTLERYGLLMGSSPLCPQADAILIGVDSLGMDVR 441
                                                        DAILIGVDSLGMDVR
Sbjct: 411 ---------------------------------------------DAILIGVDSLGMDVR 448

Query: 442 VCFGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSHGDGLRDTVSF 496
           VC GTEVRTFRFPFKIRATSE AAEKQIQQLLFPRSRRKKLRSHGDGLRDTVSF
Sbjct: 471 VCVGTEVRTFRFPFKIRATSEAAAEKQIQQLLFPRSRRKKLRSHGDGLRDTVSF 448

[Close]

BLAST of Spg005284 vs. ExPASy Swiss-Prot
Match: Q0WMN5 (Uncharacterized protein At3g49140 OS=Arabidopsis thaliana OX=3702 GN=At3g49140 PE=1 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 3.1e-15
Identity = 60/216 (27.78%), Postives = 94/216 (43.52%), Query Frame = 0


Query: 265 GETLSFESKSDRSSQR-SSLYRLEIMRIELFSVYGVQSEISLQDFQDAEPDILVHSTAEI 324
           G+    +S  D  ++   + Y+LE++RI+L +  G Q+E+ ++D + A+PD + H++AEI
Sbjct: 352 GDESEIDSSQDEKARNVVAFYKLEMIRIQLITAQGDQTEVEVEDVRKAQPDAIAHASAEI 411

Query: 325 VERFSEKGIRCNIALKALCKKRGLHVEIPNNWYQSQWSTTPERSGGKGADWNQLSEVSPC 384
           + R  E G +   ALK+LC +   H  I                        Q  EV   
Sbjct: 412 ISRLEESGDKITEALKSLCWR---HNSI------------------------QAEEVK-- 471

Query: 385 TATETSAFRGGAIVRDQGSMRCLCPTLERYGLLMGSSPLCPQADAILIGVDSLGMDVRVC 444
                                                         LIG+DSLG D+R+C
Sbjct: 472 ----------------------------------------------LIGIDSLGFDLRLC 492

Query: 445 FGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRR 480
            G ++ + RF F  RATSE  AE QI++LLFP++ +
Sbjct: 532 AGAKIESLRFAFSTRATSEENAEGQIRKLLFPKTNQ 492

[Close]

BLAST of Spg005284 vs. ExPASy TrEMBL
Match: A0A6J1C800 (uncharacterized protein At3g49140 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009215 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 5.3e-66
Identity = 149/234 (63.68%), Postives = 155/234 (66.24%), Query Frame = 0


Query: 262 GLEGETLSFESKSDRSSQRSSLYRLEIMRIELFSVYGVQSEISLQDFQDAEPDILVHSTA 321
           GL+GE LSFESKSD+SSQRS+LYRLEIMRIELFSVYGVQ+EISLQDFQ+AEPDILVHSTA
Sbjct: 289 GLDGEALSFESKSDKSSQRSTLYRLEIMRIELFSVYGVQTEISLQDFQEAEPDILVHSTA 348

Query: 322 EIVERFSEKGIRCNIALKALCKKRGLHVEIPNNWYQSQWSTTPERSGGKGADWNQLSEVS 381
           EIVE FSEKGIRCNIALKALCKKRGLHVE                               
Sbjct: 349 EIVEHFSEKGIRCNIALKALCKKRGLHVE------------------------------- 408

Query: 382 PCTATETSAFRGGAIVRDQGSMRCLCPTLERYGLLMGSSPLCPQADAILIGVDSLGMDVR 441
                                                        DAILIGVDSLGMDVR
Sbjct: 409 ---------------------------------------------DAILIGVDSLGMDVR 446

Query: 442 VCFGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSHGDGLRDTVSF 496
           VCFGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSHGDG RD+VSF
Sbjct: 469 VCFGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSHGDGFRDSVSF 446

[Close]

BLAST of Spg005284 vs. ExPASy TrEMBL
Match: A0A0A0KW72 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017020 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.2e-64
Identity = 146/234 (62.39%), Postives = 153/234 (65.38%), Query Frame = 0


Query: 262 GLEGETLSFESKSDRSSQRSSLYRLEIMRIELFSVYGVQSEISLQDFQDAEPDILVHSTA 321
           GLEGET + ESK DRSSQRS+LYRLEIMRIELFSVYGVQSE+SLQDFQDAEPDIL+HSTA
Sbjct: 289 GLEGETSNLESKIDRSSQRSTLYRLEIMRIELFSVYGVQSEVSLQDFQDAEPDILLHSTA 348

Query: 322 EIVERFSEKGIRCNIALKALCKKRGLHVEIPNNWYQSQWSTTPERSGGKGADWNQLSEVS 381
           EI+ERF+EKGI+CNIALKALCKKRGLHVE                               
Sbjct: 349 EILERFNEKGIKCNIALKALCKKRGLHVE------------------------------- 408

Query: 382 PCTATETSAFRGGAIVRDQGSMRCLCPTLERYGLLMGSSPLCPQADAILIGVDSLGMDVR 441
                                                        DAILIGVDSLGMDVR
Sbjct: 409 ---------------------------------------------DAILIGVDSLGMDVR 446

Query: 442 VCFGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSHGDGLRDTVSF 496
           VC GTEVRTFRFPFKIRATSE AAEKQIQQLLFPRSRRKKLRSHGDGLRDTVSF
Sbjct: 469 VCVGTEVRTFRFPFKIRATSEAAAEKQIQQLLFPRSRRKKLRSHGDGLRDTVSF 446

[Close]

BLAST of Spg005284 vs. ExPASy TrEMBL
Match: A0A1S3BY92 (uncharacterized protein At3g49140 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494514 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.1e-62
Identity = 142/234 (60.68%), Postives = 153/234 (65.38%), Query Frame = 0


Query: 262 GLEGETLSFESKSDRSSQRSSLYRLEIMRIELFSVYGVQSEISLQDFQDAEPDILVHSTA 321
           GLEGET + E K DRSSQRS+LYRLEI+RIELFSVYGVQSE+SLQDFQDAEPDIL+HST 
Sbjct: 289 GLEGETSNLEFKIDRSSQRSTLYRLEILRIELFSVYGVQSEVSLQDFQDAEPDILLHSTE 348

Query: 322 EIVERFSEKGIRCNIALKALCKKRGLHVEIPNNWYQSQWSTTPERSGGKGADWNQLSEVS 381
           +I+ERF+EKGI+CNIALKALCKKRGLHVE                               
Sbjct: 349 QILERFNEKGIKCNIALKALCKKRGLHVE------------------------------- 408

Query: 382 PCTATETSAFRGGAIVRDQGSMRCLCPTLERYGLLMGSSPLCPQADAILIGVDSLGMDVR 441
                                                        DAILIGVDSLG+DVR
Sbjct: 409 ---------------------------------------------DAILIGVDSLGVDVR 446

Query: 442 VCFGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSHGDGLRDTVSF 496
           VCFGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRS+GDGLRDTVSF
Sbjct: 469 VCFGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSNGDGLRDTVSF 446

[Close]

BLAST of Spg005284 vs. ExPASy TrEMBL
Match: A0A5D3CYH3 (Pentatricopeptide repeat (PPR) superfamily protein isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001020 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.1e-62
Identity = 142/234 (60.68%), Postives = 153/234 (65.38%), Query Frame = 0


Query: 262 GLEGETLSFESKSDRSSQRSSLYRLEIMRIELFSVYGVQSEISLQDFQDAEPDILVHSTA 321
           GLEGET + E K DRSSQRS+LYRLEI+RIELFSVYGVQSE+SLQDFQDAEPDIL+HST 
Sbjct: 258 GLEGETSNLEFKIDRSSQRSTLYRLEILRIELFSVYGVQSEVSLQDFQDAEPDILLHSTE 317

Query: 322 EIVERFSEKGIRCNIALKALCKKRGLHVEIPNNWYQSQWSTTPERSGGKGADWNQLSEVS 381
           +I+ERF+EKGI+CNIALKALCKKRGLHVE                               
Sbjct: 318 QILERFNEKGIKCNIALKALCKKRGLHVE------------------------------- 377

Query: 382 PCTATETSAFRGGAIVRDQGSMRCLCPTLERYGLLMGSSPLCPQADAILIGVDSLGMDVR 441
                                                        DAILIGVDSLG+DVR
Sbjct: 378 ---------------------------------------------DAILIGVDSLGVDVR 415

Query: 442 VCFGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSHGDGLRDTVSF 496
           VCFGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRS+GDGLRDTVSF
Sbjct: 438 VCFGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSNGDGLRDTVSF 415

[Close]

BLAST of Spg005284 vs. ExPASy TrEMBL
Match: A0A5A7TTC0 (Pentatricopeptide repeat (PPR) superfamily protein isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003780 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.1e-62
Identity = 142/234 (60.68%), Postives = 153/234 (65.38%), Query Frame = 0


Query: 262 GLEGETLSFESKSDRSSQRSSLYRLEIMRIELFSVYGVQSEISLQDFQDAEPDILVHSTA 321
           GLEGET + E K DRSSQRS+LYRLEI+RIELFSVYGVQSE+SLQDFQDAEPDIL+HST 
Sbjct: 258 GLEGETSNLEFKIDRSSQRSTLYRLEILRIELFSVYGVQSEVSLQDFQDAEPDILLHSTE 317

Query: 322 EIVERFSEKGIRCNIALKALCKKRGLHVEIPNNWYQSQWSTTPERSGGKGADWNQLSEVS 381
           +I+ERF+EKGI+CNIALKALCKKRGLHVE                               
Sbjct: 318 QILERFNEKGIKCNIALKALCKKRGLHVE------------------------------- 377

Query: 382 PCTATETSAFRGGAIVRDQGSMRCLCPTLERYGLLMGSSPLCPQADAILIGVDSLGMDVR 441
                                                        DAILIGVDSLG+DVR
Sbjct: 378 ---------------------------------------------DAILIGVDSLGVDVR 415

Query: 442 VCFGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSHGDGLRDTVSF 496
           VCFGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRS+GDGLRDTVSF
Sbjct: 438 VCFGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSNGDGLRDTVSF 415

[Close]

BLAST of Spg005284 vs. TAIR 10
Match: AT3G59300.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 164.1 bits (414), Expect = 2.9e-40
Identity = 98/220 (44.55%), Postives = 119/220 (54.09%), Query Frame = 0


Query: 272 SKSDRSSQRSSLYRLEIMRIELFSVYGVQSEISLQDFQDAEPDILVHSTAEIVERFSEKG 331
           S+ D +   SSLYRLEI+ IEL S+YG +S ISLQDFQDAEPDILVHST+ I+ERF+ +G
Sbjct: 313 SRRDENDMSSSLYRLEIVGIELLSLYGAESSISLQDFQDAEPDILVHSTSAIIERFNNRG 372

Query: 332 IRCNIALKALCKKRGLHVEIPNNWYQSQWSTTPERSGGKGADWNQLSEVSPCTATETSAF 391
           I  +IALKALCKK+GLH E                                         
Sbjct: 373 INSSIALKALCKKKGLHAE----------------------------------------- 432

Query: 392 RGGAIVRDQGSMRCLCPTLERYGLLMGSSPLCPQADAILIGVDSLGMDVRVCFGTEVRTF 451
                                              +A LI VDSLGMDVRV  G +V+T 
Sbjct: 433 -----------------------------------EANLISVDSLGMDVRVFAGAQVQTH 456

Query: 452 RFPFKIRATSEVAAEKQIQQLLFPRSRRKKLRSHGDGLRD 492
           RFPFK RAT+E+AAEK+I QLLFPRSRR+KL+ H + L+D
Sbjct: 493 RFPFKTRATTEMAAEKKIHQLLFPRSRRRKLKCHDESLKD 456

[Close]

BLAST of Spg005284 vs. TAIR 10
Match: AT3G49140.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 84.7 bits (208), Expect = 2.2e-16
Identity = 60/216 (27.78%), Postives = 94/216 (43.52%), Query Frame = 0


Query: 265 GETLSFESKSDRSSQR-SSLYRLEIMRIELFSVYGVQSEISLQDFQDAEPDILVHSTAEI 324
           G+    +S  D  ++   + Y+LE++RI+L +  G Q+E+ ++D + A+PD + H++AEI
Sbjct: 352 GDESEIDSSQDEKARNVVAFYKLEMIRIQLITAQGDQTEVEVEDVRKAQPDAIAHASAEI 411

Query: 325 VERFSEKGIRCNIALKALCKKRGLHVEIPNNWYQSQWSTTPERSGGKGADWNQLSEVSPC 384
           + R  E G +   ALK+LC +   H  I                        Q  EV   
Sbjct: 412 ISRLEESGDKITEALKSLCWR---HNSI------------------------QAEEVK-- 471

Query: 385 TATETSAFRGGAIVRDQGSMRCLCPTLERYGLLMGSSPLCPQADAILIGVDSLGMDVRVC 444
                                                         LIG+DSLG D+R+C
Sbjct: 472 ----------------------------------------------LIGIDSLGFDLRLC 492

Query: 445 FGTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRR 480
            G ++ + RF F  RATSE  AE QI++LLFP++ +
Sbjct: 532 AGAKIESLRFAFSTRATSEENAEGQIRKLLFPKTNQ 492

[Close]

BLAST of Spg005284 vs. TAIR 10
Match: AT5G24060.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 74.3 bits (181), Expect = 3.0e-13
Identity = 57/216 (26.39%), Postives = 89/216 (41.20%), Query Frame = 0


Query: 265 GETLSFESKSDRSSQRSSLYRLEIMRIELFSVYGVQSEISLQDFQDAEPDILVHSTAEIV 324
           GE  S     + S      Y+LEI+RI+L +  G Q+E+ ++D + A+PD++  ++  I+
Sbjct: 329 GENESEILHVENSRNAIQYYKLEIIRIQLITAQGHQTEVEVEDVRKAQPDVIACASDGIL 388

Query: 325 ERFSEKGIRCNIALKALCKKRGLHVEIPNNWYQSQWSTTPERSGGKGADWNQLSEVSPCT 384
            R  E G +   AL++LC +        NN  Q++                         
Sbjct: 389 TRLEEDGDKLTEALRSLCWR--------NNGIQAE------------------------- 448

Query: 385 ATETSAFRGGAIVRDQGSMRCLCPTLERYGLLMGSSPLCPQADAILIGVDSLGMDVRVCF 444
                                                     +  LIG+DSLG D+R+C 
Sbjct: 449 ------------------------------------------EVKLIGIDSLGFDLRICS 469

Query: 445 GTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRK 481
           G ++ T RF F IRATSE  AE Q+++LLF  +  K
Sbjct: 509 GMQIETLRFAFSIRATSEHNAEGQLRELLFASTPSK 469

[Close]

BLAST of Spg005284 vs. TAIR 10
Match: AT5G24060.2 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 74.3 bits (181), Expect = 3.0e-13
Identity = 57/216 (26.39%), Postives = 89/216 (41.20%), Query Frame = 0


Query: 265 GETLSFESKSDRSSQRSSLYRLEIMRIELFSVYGVQSEISLQDFQDAEPDILVHSTAEIV 324
           GE  S     + S      Y+LEI+RI+L +  G Q+E+ ++D + A+PD++  ++  I+
Sbjct: 342 GENESEILHVENSRNAIQYYKLEIIRIQLITAQGHQTEVEVEDVRKAQPDVIACASDGIL 401

Query: 325 ERFSEKGIRCNIALKALCKKRGLHVEIPNNWYQSQWSTTPERSGGKGADWNQLSEVSPCT 384
            R  E G +   AL++LC +        NN  Q++                         
Sbjct: 402 TRLEEDGDKLTEALRSLCWR--------NNGIQAE------------------------- 461

Query: 385 ATETSAFRGGAIVRDQGSMRCLCPTLERYGLLMGSSPLCPQADAILIGVDSLGMDVRVCF 444
                                                     +  LIG+DSLG D+R+C 
Sbjct: 462 ------------------------------------------EVKLIGIDSLGFDLRICS 482

Query: 445 GTEVRTFRFPFKIRATSEVAAEKQIQQLLFPRSRRK 481
           G ++ T RF F IRATSE  AE Q+++LLF  +  K
Sbjct: 522 GMQIETLRFAFSIRATSEHNAEGQLRELLFASTPSK 482

The following BLAST results are available for this feature:

BLAST of Spg005284 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898170.1	8.1e-69	64.73	uncharacterized protein At3g49140 isoform X1 [Benincasa hispida]	[more]
XP_038898179.1	4.9e-66	64.10	uncharacterized protein At3g49140 isoform X2 [Benincasa hispida]	[more]
XP_022137915.1	1.1e-65	63.68	uncharacterized protein At3g49140 isoform X1 [Momordica charantia]	[more]
XP_004152092.1	4.6e-64	62.39	uncharacterized protein At3g49140 isoform X2 [Cucumis sativus]	[more]
XP_031740660.1	4.6e-64	62.39	uncharacterized protein At3g49140 isoform X1 [Cucumis sativus]	[more]

BLAST of Spg005284 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WMN5	3.1e-15	27.78	Uncharacterized protein At3g49140 OS=Arabidopsis thaliana OX=3702 GN=At3g49140 P...	[more]

BLAST of Spg005284 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C800	5.3e-66	63.68	uncharacterized protein At3g49140 isoform X1 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A0A0KW72	2.2e-64	62.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017020 PE=4 SV=1	[more]
A0A1S3BY92	2.1e-62	60.68	uncharacterized protein At3g49140 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A5D3CYH3	2.1e-62	60.68	Pentatricopeptide repeat (PPR) superfamily protein isoform 2 OS=Cucumis melo var...	[more]
A0A5A7TTC0	2.1e-62	60.68	Pentatricopeptide repeat (PPR) superfamily protein isoform 2 OS=Cucumis melo var...	[more]

BLAST of Spg005284 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G59300.1	2.9e-40	44.55	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G49140.1	2.2e-16	27.78	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G24060.1	3.0e-13	26.39	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G24060.2	3.0e-13	26.39	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 122..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR13343	CREG1 PROTEIN	coord: 220..350 coord: 427..486
None	No IPR available	PANTHER	PTHR13343:SF18	PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN	coord: 220..350 coord: 427..486
IPR037119	Haem oxygenase HugZ-like superfamily	GENE3D	3.20.180.10		coord: 413..486 e-value: 7.6E-10 score: 40.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005284.1	Spg005284.1	mRNA