Spg005196 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005196
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold11: 33850429 .. 33852435 (-)
RNA-Seq Expression	Spg005196
Synteny	Spg005196

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCAAAATCAAAACAACTTCGATCCGTCTTCATCTGTTCCTCCTCATTGGTCGATCATTCAACATCCCAATCACGATCCGGAGCAGCCGATGATGCCAACAGATCAGATGCCGCAGTTCGATCAATCCTCGTCATTCCCTTCCTATTCTCAGACCGATAATGTGGCGGTGTTTCAGCAGTCGCCGATGACAATAATGCCGCCACCGCCGCCGCAAAATCAACCGATTAGAATTGAGAGTAATGATAATGGTTCTAGGCCTCGGGGTTACAAAACGGAGGCGGAGATGATGGCGGAGAATTACCTGGAGGAATATTCGAGGTCTATTGATCCTCAGGATGAGTCAGATCTCCTGAACTTCGATCCGGTTCCGATGAATTTCTTGAACTTCGAGAATACTGCGATCACAGGCAATTCTAATTCTAATAATGATACGACGCAGTTTTTTACTCCTTCCGTTCACAGTAACTTTTCTGCTCCGGCTCCGATCGAGTGTACTGGTTGCCTTTCCGACGTCGTCAATTGTTGCTTCGGTAGGATGCGTCCTGCGCCCGTGAATTCTCTGCCGAGAGAACCGCCGCCGCGACGCGGTGGAGCTGCGACTAAGGGCGGAGCCAGCTCATCGCGGACCGCCAAGAATTGGAGCGAAAACGAGCACAAGTACGTGACAACGCAATACTCTTTTCTTTTTATTAAATAACCTATTTTTTTTTTTTTGGGTTTTAATGGAAAAGAAAAATTGAACGTTTATAAGTAAGACAAAATAAGAAAATAATTGTTTATTTCTTTATTTTCTTTACTCTCTTTCATTATTTGAGACTCACTCCTGAATATTAACCTATGATACTTCTGGTTTTTATTTTTATTATATATTTAAAAAAATTATGAGTAAATTTTCTTTTTTCTTCCTTGACACAACATTATGAGTAAGTTTTGAAAGCTATTCTAAATTGAAAATAGTTATTTGTGCTCATTAGATAGTGATTTGATTTTTTTTTCTTTTTGGTTTTTGAAATTATAATTAAGCTTATAAATCTTAATTACTCCCACTTATGAGATTTTTTTTTTTGTGTTGTTATCTATTTTTTTACAAATGTTATCAAAATTATTCAAGTTAAATTTTGAAAACTAAAACAAGCAGGGTTTCTTGTTTGATTATCATTTGGGTTTTGAAAATTAAACTTATAAACACTATACTTTCACCTGTGAGATTTTTTTTTGTTTTCTTATCTACCTTTTATAAATGTTTTCAATATGTAAACCATATTTTGAAAACTAAAAATAAAAAAACAGTTTTTAAAACTCGTTTTGTTTTTTAAATTTGGTTAAGAATTCAAATGTTTTTTTGTAAGAAAGATGAAGATTATCGCAAAGTAATTGTGAGCGAAAACCAGCCCAAGTTTCAAAAACCAAAAAACTAAACATGAAAAACCAAGACCATAATAAAGAATTTGGGAAGAAACCATCATAAATTTGAAAAACAGAAAACTATAAAATGATTTTCATCTTTCTTAAAGATAATATAATATTTGAATTGTTAGTCAAATCCCAAAAGTAATAAAAATCAAAATAAAAATAAGAATGACTTCTTCCTTTTTTTGAATCATACATACAATATTTGACTTATTTTCTTTGAATATTAATTCATGTAAATAGCTATTTTTTAAGAGTTGAAAAAATAAATAGACATTACTAACATTCAAAAACTAAATTTATATATAATTTGTGGGCACAGTTTATTTCTGGTGGGGATGGAGATATTTGGCAAGGGTGATTGGAAAAACATCGCAGGCAAAGTAGTGATTACAAAAACACACACACAAGTTGCAAGCCATGCCCAAAAGTACTTTGGTCGCCAGCAGTCATCACGAAAAGATCGGAAGAGATCGAGCATTCACGATATCAACACCGTCGATCCTATGTTATTGTTGCAGGTGTGTAACCGTCTAGGACGATCACTGGCAACGACAACGATGAACTATCCTCCACTGCTGCAACATTTTAG

mRNA sequence

ATGGACCAAAATCAAAACAACTTCGATCCGTCTTCATCTGTTCCTCCTCATTGGTCGATCATTCAACATCCCAATCACGATCCGGAGCAGCCGATGATGCCAACAGATCAGATGCCGCAGTTCGATCAATCCTCGTCATTCCCTTCCTATTCTCAGACCGATAATGTGGCGGTGTTTCAGCAGTCGCCGATGACAATAATGCCGCCACCGCCGCCGCAAAATCAACCGATTAGAATTGAGAGTAATGATAATGGTTCTAGGCCTCGGGGTTACAAAACGGAGGCGGAGATGATGGCGGAGAATTACCTGGAGGAATATTCGAGGTCTATTGATCCTCAGGATGAGTCAGATCTCCTGAACTTCGATCCGGTTCCGATGAATTTCTTGAACTTCGAGAATACTGCGATCACAGGCAATTCTAATTCTAATAATGATACGACGCAGTTTTTTACTCCTTCCGTTCACAGTAACTTTTCTGCTCCGGCTCCGATCGAGTGTACTGGTTGCCTTTCCGACGTCGTCAATTGTTGCTTCGGTAGGATGCGTCCTGCGCCCGTGAATTCTCTGCCGAGAGAACCGCCGCCGCGACGCGGTGGAGCTGCGACTAAGGGCGGAGCCAGCTCATCGCGGACCGCCAAGAATTGGAGCGAAAACGAGCACAAGACGATCACTGGCAACGACAACGATGAACTATCCTCCACTGCTGCAACATTTTAG

Coding sequence (CDS)

ATGGACCAAAATCAAAACAACTTCGATCCGTCTTCATCTGTTCCTCCTCATTGGTCGATCATTCAACATCCCAATCACGATCCGGAGCAGCCGATGATGCCAACAGATCAGATGCCGCAGTTCGATCAATCCTCGTCATTCCCTTCCTATTCTCAGACCGATAATGTGGCGGTGTTTCAGCAGTCGCCGATGACAATAATGCCGCCACCGCCGCCGCAAAATCAACCGATTAGAATTGAGAGTAATGATAATGGTTCTAGGCCTCGGGGTTACAAAACGGAGGCGGAGATGATGGCGGAGAATTACCTGGAGGAATATTCGAGGTCTATTGATCCTCAGGATGAGTCAGATCTCCTGAACTTCGATCCGGTTCCGATGAATTTCTTGAACTTCGAGAATACTGCGATCACAGGCAATTCTAATTCTAATAATGATACGACGCAGTTTTTTACTCCTTCCGTTCACAGTAACTTTTCTGCTCCGGCTCCGATCGAGTGTACTGGTTGCCTTTCCGACGTCGTCAATTGTTGCTTCGGTAGGATGCGTCCTGCGCCCGTGAATTCTCTGCCGAGAGAACCGCCGCCGCGACGCGGTGGAGCTGCGACTAAGGGCGGAGCCAGCTCATCGCGGACCGCCAAGAATTGGAGCGAAAACGAGCACAAGACGATCACTGGCAACGACAACGATGAACTATCCTCCACTGCTGCAACATTTTAG

Protein sequence

MDQNQNNFDPSSSVPPHWSIIQHPNHDPEQPMMPTDQMPQFDQSSSFPSYSQTDNVAVFQQSPMTIMPPPPPQNQPIRIESNDNGSRPRGYKTEAEMMAENYLEEYSRSIDPQDESDLLNFDPVPMNFLNFENTAITGNSNSNNDTTQFFTPSVHSNFSAPAPIECTGCLSDVVNCCFGRMRPAPVNSLPREPPPRRGGAATKGGASSSRTAKNWSENEHKTITGNDNDELSSTAATF

Homology

The following BLAST results are available for this feature:

BLAST of Spg005196 vs.


Match Name	E-value	Identity	Description

BLAST of Spg005196 vs.


Match Name	E-value	Identity	Description

BLAST of Spg005196 vs.


Match Name	E-value	Identity	Description

BLAST of Spg005196 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..238
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005196.1	Spg005196.1	mRNA