Spg005014 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg005014
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Locationscaffold4: 10690739 .. 10694325 (+)
RNA-Seq ExpressionSpg005014
SyntenySpg005014
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTCCCAGAAAGGGCTCTCTACAATGAGGATCTTCAAGAAAAGATTTAGGCAAATTGAAGACGTAGATGGAGGCTGGACACTCGTAACCCGACGGAAGAACCGAAAGCAAAATTGGGTTCAAAAGGAATCTCGTTTGTTTCAAGAACACAAAATAAAAGGCAAGTCTCGAAGGAAAAATGGGAAGAAGTATATGAGAAGGCTCAAGCCTATCTTAGAGGAAAATGAGGAGCATATCCAACCTCCACATCCAATAACTCTAAAAGAATTCTTCCCAAGAACTTTTCTTGCAGGAATCAATCAAATTGTTACATGTCATGTCGTTGATGTGACAGAAGATGATAATGCTACATCGACTACGTCAGAAGCAATCATGAACCTGGAAGACCTGCCATCCTTCAATATAGATGATTTACTGTCACTCCCTCAAGAGACCAAAAATACTCTTATTGAGGTGTTAAAGGATTGTAAACCATCTACTTCTCAGACAAATAATGTTGCTCCATGTTGCACATCCATAGCCTTTACCGATGAAGATCTACTACTTGGGTCGAAGCCTCATAATAGGCCTTTGTTTGTCTCGGGCTACATCAGAGAGCAAAAAGTTAGCCGAATTCTCATTGATGATGGTTCTGCTGTTAACATAATGCCCAAGTCTACCATGAACCAACTAGGCATTCTGATGCAAGAATTGTCAAATAGTAAGTTGGTAATTCAAGGATTTAACCAAGGCGGACAACGCGCGATTGGCATGATTCGTCTAGAGCTCATTATTGGAGATTTAAAGGCTAACACCCTATTTCATGTTATAGACTCTAGGACCACCTACAAGTTGTTATTAGGTCATCCCTGGATTCATGAAAATGGAGTAGTTACTTCCACGCTGCATCAGTGTTTTAAATTCCATCAAGATGGTATCAAGAAGGTTGATGCTGATACCAACCCCTTCACAGAGGCTGAGTCTCATTATGCTGATGCAAAGTTTTATATGAAGAATGACAGTGTGGGGGAAGCTATGCCGTCAGAAGTTCCTTTGATAAAAAGCAGCAACAAACCTGAGCAACAAACAAGCACGAGAAAAGAGCTTAATGAAAAAGCATAAACTTCTCAGAAAAGCAAGGTATCTCTAAGCCAAATAAAAGCTGAAGTGGCGAAAAATGAGAAGGTACTTTGTTCAGAAGAGAAGAAGACAAACGCTCTTGTCTTGCGCTATGTTCCCTTATCTCGACGCAAGAAGGGTGATTCGCCATTTGCAGAATGCTCCAATAATTTAAGAGTTGGCGACATTGAAATTTTGAAAGAGAGTTTTATCACACCTCTTACAAAGATATCCAAACAAGAGGTCAAAGACAAACAAGTAGAAGCAACTCTGCCTGATAAACGAACAGAAGAGGGGTTTGATCCTAAAGCATACAAACTCTTGGCAAAGGCAGGTTATGATTTCACAACGCATACTGAGTTTAAAAGTTTACGAATCTTTGACCAAAGGCCTGAACTTTCCTCAACACAGAAGAAGCTTCAAAAAGAGGGATATGCTATACCCATTTCAAGAGCTGGTCTTGGATATAAATCTCCTGAGCCGGTTCGAATCACAAGAAAAGGGAAAGCGAAAGTTGCAGATACGCTTCACATTACAGTGGAAGAAATCGATGATTCCGAACAGGCTAAAGAAAACATAGATCATAGGACTTCTGCATTTGATCGCATTGGACCGTCAGTTACACGATCCTCGGTTTTTCAAAGACTGAGTACAGCTGCAATAGAAGATGAAAGTCAACATCCAACTTATGGCTCCACACGACCTTCAGCTTTCCAAAGATTAAGTATGGCTTCTGAAGAAAAAGAAAATGTGCATTCAACTCCTACCACACGGCTATCAGCTTTCCAAAGGTTGAGTGTAGCCACAAAAGAAGTAAAGAACGGTCCCCTATATCAGTTTCTAACATAACAGAAACTCCAATCAAGACAAAGGGTGATGAGAAAATTCGTAGCGTTGTCCCCTCACGAATGAAGAGAAAATTGCTTGTTTCTGTAAATACAGAGGGTTCGTTAAAAATAAAGCGACATGATATTATTATCACAAGACCGAAAGAGAAAAGCCCTGATGATGAAAAAGACACAGTCGTATGCTACCACATCACCACAGAGGAAGAAACGGACCCTGAAACGTCTGAAGAAGATGAAAGTTCCTTAAAAAAAATCTATGCATGAAATGTAAATACTCCTTATCGTAAGAGTCTAAACTACATGATACTCTTGGCCAGCATGAGTTAAAAAGGTGAACGGCAAAAAAAAAAATCAAATTTGTATATTGAACTACGTTATGACTTGATCCCTTCCCACTTGAAGGGTACGTAGGCAACTTAAGAAAAAAAAAACTTAAGTTCAGTCAAAGCAATAAAAAAATTGTGTCGCAGATAAAGCTTCGAACTTTTATTATGGCATAGACAAACGAAGCATAATGTTTGATACAATGCATTAAAAAAAAAAAGTCTTACAGGAGACAAGTCTTAAGGTAAGTAAAAAAGAATTTTGGCTATGAATGGAATCTCAACACTTTTATTTATAGCATGAATGAATAAATGAACAAATATTATTCGACAAACATCAATTGATCAATTAAAAAATGGGACTTTACATCTAATTTGGAAAACAAATGGGGGCAATCAAATCAAATCATCCACTTGAAGTTCCTCAACTCTTCACGTATGTCCTCTAAGTTTTTACGAGCCATGGCTAAAGACTTAACATCTTCATCAGTCATGACAAAGGCACACTCAATATTGGGGATCTCTTCACGGACTTTGGTAACCTCGAGTCTCTGTTGCTTCAAAGTCTTCTCCTCCATCACAAATCAAATTGGAAAGCCTCTCATGCTCGACTAACGTTGTCTCAAGTTTGGCCTCTAATTCCTTTATCTCCAAGGATGATCGTGCAAGCTGTTGTTCGAGTGTGTCATTTAAGGCTTCATTTGTCTCAAAGTACAAGTTCAAGCTTTCCTCGTTTCAAATTGCAGTTCGAGTTTTCCTCGCTTCGAGTACTCCAAGTTCAAGCTTCACTCGTTCCAAGTTTAAGTTCGAGTTTTCATAACTTCAAGTATTCTAAGTTCAAGTTCAGGGTTTCACTCGTTTCAAGTTCAAGTTTGAGCTTTCCTCATTTCAAGTACTTCAAGTTCAAGCTTTCATCGCTTCAAGTACTCTAAGTTCAAGTTCGAGCATTCCTCACTGCAAGTACTTCAAGTTCCAGTTCAATCTTCGCTCATTTCAAGTTCAAGTTCGAGCTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGGGGGCTTTGCTCGTTTCAACTTCAAGTTCGGGCTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCAGGGGCTTCGCTCATTTCAAGTTCAAGTTCGAGTTTTCCTCACTTCAAGTACTTCAAGTTCAAGCTTTCATCTCTTCAAGTGCTTTAAGTTCAAGTTCAGGGCTTCGCTTGTTTCGAGTTCAAGTTCGAGCTTTCCCCACTACAAGTACTCCAAGTTCTAGTTCAATCTTTTCTCATTTCAAGTTCAAGTTCAAGCTTTCATAA

mRNA sequence

ATGACTTCCCAGAAAGGGCTCTCTACAATGAGGATCTTCAAGAAAAGATTTAGGCAAATTGAAGACGTAGATGGAGGCTGGACACTCGTAACCCGACGGAAGAACCGAAAGCAAAATTGGGTTCAAAAGGAATCTCGTTTGTTTCAAGAACACAAAATAAAAGGCAAGTCTCGAAGGAAAAATGGGAAGAAGTATATGAGAAGGCTCAAGCCTATCTTAGAGGAAAATGAGGAGCATATCCAACCTCCACATCCAATAACTCTAAAAGAATTCTTCCCAAGAACTTTTCTTGCAGGAATCAATCAAATTGTTACATGTCATGTCGTTGATGTGACAGAAGATGATAATGCTACATCGACTACGTCAGAAGCAATCATGAACCTGGAAGACCTGCCATCCTTCAATATAGATGATTTACTAGCTGGTCTTGGATATAAATCTCCTGAGCCGGTTCGAATCACAAGAAAAGGGAAAGCGAAAGTTGCAGATACGCTTCACATTACAGTGGAAGAAATCGATGATTCCGAACAGGCTAAAGAAAACATAGATCATAGGACTTCTGCATTTGATCGCATTGGACCGTCAGTTACACGATCCTCGGTTTTTCAAAGACTGAGTACAGCTGCAATAGAAGATGAAAGTCAACATCCAACTTATGGCTCCACACGACCTTCAGCTTTCCAAAGATTAAGTATGGCTTCTGAAGAAAAAGAAAATGTGCATTCAACTCCTACCACACGGCTATCAGCTTTCCAAAGACTTAACATCTTCATCAGTCATGACAAAGGCACACTCAATATTGGGGATCTCTTCACGGACTTTGGTAACCTCGAGTCTCTGTTGCTTCAAAGTCTTCTCCTCCATCACAAATCAAATTGGAAAGCCTCTCATGCTCGACTAACGTTGTCTCAAGTTTGGCCTCTAATTCCTTTATCTCCAAGGATGATCGTGCAAGCTGTTGTTCGAGGTTTCACTCGTTTCAAGTTCAAGTTTGAGCTTTCCTCATTTCAAGTACTTCAAGTTCAAGCTTTCATCGCTTCAAGTACTCTAAGTTCAAGTTCGAGCATTCCTCACTGCAAGTACTTCAAGTTCCAGTTCAATCTTCGCTCATTTCAAGTTCAAGTTCGAGCTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGGGGGCTTTGCTCGTTTCAACTTCAAGTTCGGGCTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCAGGGGCTTCGCTCATTTCAAGTTCAAGTTCGAGTTTTCCTCACTTCAAGTACTTCAAGTTCAAGCTTTCATCTCTTCAAGTGCTTTAAGTTCAAGTTCAGGGCTTCGCTTGTTTCGAGTTCAAGTTCGAGCTTTCCCCACTACAAGTACTCCAAGTTCTAGTTCAATCTTTTCTCATTTCAAGTTCAAGTTCAAGCTTTCATAA

Coding sequence (CDS)

ATGACTTCCCAGAAAGGGCTCTCTACAATGAGGATCTTCAAGAAAAGATTTAGGCAAATTGAAGACGTAGATGGAGGCTGGACACTCGTAACCCGACGGAAGAACCGAAAGCAAAATTGGGTTCAAAAGGAATCTCGTTTGTTTCAAGAACACAAAATAAAAGGCAAGTCTCGAAGGAAAAATGGGAAGAAGTATATGAGAAGGCTCAAGCCTATCTTAGAGGAAAATGAGGAGCATATCCAACCTCCACATCCAATAACTCTAAAAGAATTCTTCCCAAGAACTTTTCTTGCAGGAATCAATCAAATTGTTACATGTCATGTCGTTGATGTGACAGAAGATGATAATGCTACATCGACTACGTCAGAAGCAATCATGAACCTGGAAGACCTGCCATCCTTCAATATAGATGATTTACTAGCTGGTCTTGGATATAAATCTCCTGAGCCGGTTCGAATCACAAGAAAAGGGAAAGCGAAAGTTGCAGATACGCTTCACATTACAGTGGAAGAAATCGATGATTCCGAACAGGCTAAAGAAAACATAGATCATAGGACTTCTGCATTTGATCGCATTGGACCGTCAGTTACACGATCCTCGGTTTTTCAAAGACTGAGTACAGCTGCAATAGAAGATGAAAGTCAACATCCAACTTATGGCTCCACACGACCTTCAGCTTTCCAAAGATTAAGTATGGCTTCTGAAGAAAAAGAAAATGTGCATTCAACTCCTACCACACGGCTATCAGCTTTCCAAAGACTTAACATCTTCATCAGTCATGACAAAGGCACACTCAATATTGGGGATCTCTTCACGGACTTTGGTAACCTCGAGTCTCTGTTGCTTCAAAGTCTTCTCCTCCATCACAAATCAAATTGGAAAGCCTCTCATGCTCGACTAACGTTGTCTCAAGTTTGGCCTCTAATTCCTTTATCTCCAAGGATGATCGTGCAAGCTGTTGTTCGAGGTTTCACTCGTTTCAAGTTCAAGTTTGAGCTTTCCTCATTTCAAGTACTTCAAGTTCAAGCTTTCATCGCTTCAAGTACTCTAAGTTCAAGTTCGAGCATTCCTCACTGCAAGTACTTCAAGTTCCAGTTCAATCTTCGCTCATTTCAAGTTCAAGTTCGAGCTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGGGGGCTTTGCTCGTTTCAACTTCAAGTTCGGGCTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCAGGGGCTTCGCTCATTTCAAGTTCAAGTTCGAGTTTTCCTCACTTCAAGTACTTCAAGTTCAAGCTTTCATCTCTTCAAGTGCTTTAAGTTCAAGTTCAGGGCTTCGCTTGTTTCGAGTTCAAGTTCGAGCTTTCCCCACTACAAGTACTCCAAGTTCTAGTTCAATCTTTTCTCATTTCAAGTTCAAGTTCAAGCTTTCATAA

Protein sequence

MTSQKGLSTMRIFKKRFRQIEDVDGGWTLVTRRKNRKQNWVQKESRLFQEHKIKGKSRRKNGKKYMRRLKPILEENEEHIQPPHPITLKEFFPRTFLAGINQIVTCHVVDVTEDDNATSTTSEAIMNLEDLPSFNIDDLLAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPSVTRSSVFQRLSTAAIEDESQHPTYGSTRPSAFQRLSMASEEKENVHSTPTTRLSAFQRLNIFISHDKGTLNIGDLFTDFGNLESLLLQSLLLHHKSNWKASHARLTLSQVWPLIPLSPRMIVQAVVRGFTRFKFKFELSSFQVLQVQAFIASSTLSSSSSIPHCKYFKFQFNLRSFQVQVRAFLTSSTLSSSSGALLVSTSSSGFPHFKYSKFKFRGFAHFKFKFEFSSLQVLQVQAFISSSALSSSSGLRLFRVQVRAFPTTSTPSSSSIFSHFKFKFKLS
Homology
[Close]
BLAST of Spg005014 vs. NCBI nr
Match: TYJ98225.1 (uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 1.4e-25
Identity = 68/129 (52.71%), Postives = 94/129 (72.87%), Query Frame = 0 

Query: 134  FNIDDLLAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIG 193
            ++I +  AG+GY+S EPVRIT KGKAKVA+T HITVEE  DSE+ K+    R+S FDRI 
Sbjct: 1043 YSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEESKDSEEGKKVRSQRSSVFDRIA 1102

Query: 194  PSVTRSSVFQRLSTAAIEDESQHPTYGSTRPSAFQRLSMASEEKENVHSTPTTRLSAFQR 253
             S  R SVFQR+ST+  +D +Q  T  STR SAFQRL+ ++++  ++  TPTTR SAF+R
Sbjct: 1103 FSAIRPSVFQRVSTSIAKDSNQVSTCSSTRLSAFQRLNTSAKKVRSISPTPTTRKSAFKR 1162

Query: 254  LNIFISHDK 263
            L++ ++ D+
Sbjct: 1163 LSVSVTRDQ 1171

[Close]
BLAST of Spg005014 vs. NCBI nr
Match: TYJ98225.1 (uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 4.8e-18
Identity = 57/127 (44.88%), Postives = 82/127 (64.57%), Query Frame = 0 

Query: 14  KKRFRQIEDVDGGWTLVTRRKNRKQNWVQKESRLFQEHKIKGKSRRKNGKKYMRRLKPIL 73
           K+  +Q+++V+ GWTLVTRRK RKQ++ QKES  ++ ++ KGKS+R+N +K  R+  PI+
Sbjct: 541 KEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRNTRKNPRKFLPII 600

Query: 74  EENEEHIQPPHPITLKEFFPRTFLAGINQIVTCHVVDVTEDDNATSTTSEAIMNLEDLPS 133
           EE+E   +P  PI LK+FFP+ F     +IV+CH    TE+D   S   E     EDL  
Sbjct: 601 EESEGLSRPRRPIILKDFFPKNFPM---EIVSCHTTSTTEEDACPSNAMEETPKPEDLLP 660

Query: 134 FNIDDLL 141
             I+DLL
Sbjct: 661 LGINDLL 664


HSP 2 Score: 128.6 bits (322), Expect = 1.4e-25
Identity = 68/129 (52.71%), Postives = 94/129 (72.87%), Query Frame = 0 

Query: 134  FNIDDLLAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIG 193
            ++I +  AG+GY+S EPVRIT KGKAKVA+T HITVEE  DSE+ K+    R+S FDRI 
Sbjct: 1065 YSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEESKDSEEGKKVRSQRSSVFDRIA 1124

Query: 194  PSVTRSSVFQRLSTAAIEDESQHPTYGSTRPSAFQRLSMASEEKENVHSTPTTRLSAFQR 253
             S  R SVFQR+ST+  +D +Q  T  STR SAFQRL+ ++++  ++  TPTTR SAF+R
Sbjct: 1125 FSAIRPSVFQRVSTSIAKDSNQVSTCSSTRLSAFQRLNTSAKKVRSISPTPTTRKSAFKR 1184

Query: 254  LNIFISHDK 263
            L++ ++ D+
Sbjct: 1185 LSVSVTRDQ 1193

[Close]
BLAST of Spg005014 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 4.8e-18
Identity = 57/127 (44.88%), Postives = 82/127 (64.57%), Query Frame = 0 

Query: 14  KKRFRQIEDVDGGWTLVTRRKNRKQNWVQKESRLFQEHKIKGKSRRKNGKKYMRRLKPIL 73
           K+  +Q+++V+ GWTLVTRRK RKQ++ QKES  ++ ++ KGKS+R+N +K  R+  PI+
Sbjct: 563 KEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRNTRKNPRKFLPII 622

Query: 74  EENEEHIQPPHPITLKEFFPRTFLAGINQIVTCHVVDVTEDDNATSTTSEAIMNLEDLPS 133
           EE+E   +P  PI LK+FFP+ F     +IV+CH    TE+D   S   E     EDL  
Sbjct: 623 EESEGLSRPRRPIILKDFFPKNFPM---EIVSCHTTSTTEEDACPSNAMEETPKPEDLLP 682

Query: 134 FNIDDLL 141
             I+DLL
Sbjct: 683 LGINDLL 686


HSP 2 Score: 128.6 bits (322), Expect = 1.4e-25
Identity = 68/129 (52.71%), Postives = 94/129 (72.87%), Query Frame = 0 

Query: 134 FNIDDLLAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIG 193
           ++I +  AG+GY+S EPVRIT KGKAKVA+T HITVEE  DSE+ K++   R+S FDRI 
Sbjct: 373 YSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEESKDSEEGKKDRSQRSSVFDRIA 432

Query: 194 PSVTRSSVFQRLSTAAIEDESQHPTYGSTRPSAFQRLSMASEEKENVHSTPTTRLSAFQR 253
            S  R SVFQR+ST   +D +Q  T  STR SAFQRL+ ++++  ++  TPTTR SAF+R
Sbjct: 433 FSAIRPSVFQRVSTWITKDSNQVSTCSSTRLSAFQRLNTSAKKVRSISPTPTTRKSAFKR 492

Query: 254 LNIFISHDK 263
           L++ ++ D+
Sbjct: 493 LSVSVTRDQ 501

[Close]
BLAST of Spg005014 vs. NCBI nr
Match: TYK18071.1 (uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 1.4e-25
Identity = 68/129 (52.71%), Postives = 94/129 (72.87%), Query Frame = 0 

Query: 134  FNIDDLLAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIG 193
            ++I +  AG+GY+S EPVRIT KGKAKVA+T HITVEE  DSE+ K+    R+S FDRI 
Sbjct: 995  YSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEESKDSEEGKKVRSQRSSVFDRIA 1054

Query: 194  PSVTRSSVFQRLSTAAIEDESQHPTYGSTRPSAFQRLSMASEEKENVHSTPTTRLSAFQR 253
             S  R SVFQR+ST+  +D +Q  T  STR SAFQRL+ ++++  ++  TPTTR SAF+R
Sbjct: 1055 FSAIRPSVFQRVSTSIAKDSNQVSTCSSTRLSAFQRLNTSAKKVRSISPTPTTRKSAFKR 1114

Query: 254  LNIFISHDK 263
            L++ ++ D+
Sbjct: 1115 LSVSVTRDQ 1123

[Close]
BLAST of Spg005014 vs. NCBI nr
Match: TYK18071.1 (uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 4.8e-18
Identity = 57/127 (44.88%), Postives = 82/127 (64.57%), Query Frame = 0 

Query: 14  KKRFRQIEDVDGGWTLVTRRKNRKQNWVQKESRLFQEHKIKGKSRRKNGKKYMRRLKPIL 73
           K+  +Q+++V+ GWTLVTRRK RKQ++ QKES  ++ ++ KGKS+R+N +K  R+  PI+
Sbjct: 493 KEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRNTRKNPRKFLPII 552

Query: 74  EENEEHIQPPHPITLKEFFPRTFLAGINQIVTCHVVDVTEDDNATSTTSEAIMNLEDLPS 133
           EE+E   +P  PI LK+FFP+ F     +IV+CH    TE+D   S   E     EDL  
Sbjct: 553 EESEGLSRPRRPIILKDFFPKNFPM---EIVSCHTTSTTEEDACPSNAMEETPKPEDLLP 612

Query: 134 FNIDDLL 141
             I+DLL
Sbjct: 613 LGINDLL 616


HSP 2 Score: 127.9 bits (320), Expect = 2.4e-25
Identity = 67/129 (51.94%), Postives = 93/129 (72.09%), Query Frame = 0 

Query: 134 FNIDDLLAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIG 193
           ++I +  AG+GY S EPVRIT KGK KVA+T HITVEE  DSE+ K++   R+S FDRI 
Sbjct: 820 YSIPNSRAGIGYHSSEPVRITGKGKVKVANTCHITVEESKDSEEGKKDRSQRSSVFDRIA 879

Query: 194 PSVTRSSVFQRLSTAAIEDESQHPTYGSTRPSAFQRLSMASEEKENVHSTPTTRLSAFQR 253
            S  R SVFQR+ST+  +D +Q  T  STR SAFQRL+ ++++  ++  TPTTR SAF+R
Sbjct: 880 FSAIRPSVFQRVSTSIAKDSNQVSTCSSTRLSAFQRLNTSAKKVRSISPTPTTRKSAFKR 939

Query: 254 LNIFISHDK 263
           L++ ++ D+
Sbjct: 940 LSVSVTRDQ 948

[Close]
BLAST of Spg005014 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.8e-26
Identity = 68/129 (52.71%), Postives = 94/129 (72.87%), Query Frame = 0 

Query: 134  FNIDDLLAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIG 193
            ++I +  AG+GY+S EPVRIT KGKAKVA+T HITVEE  DSE+ K+    R+S FDRI 
Sbjct: 1065 YSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEESKDSEEGKKVRSQRSSVFDRIA 1124

Query: 194  PSVTRSSVFQRLSTAAIEDESQHPTYGSTRPSAFQRLSMASEEKENVHSTPTTRLSAFQR 253
             S  R SVFQR+ST+  +D +Q  T  STR SAFQRL+ ++++  ++  TPTTR SAF+R
Sbjct: 1125 FSAIRPSVFQRVSTSIAKDSNQVSTCSSTRLSAFQRLNTSAKKVRSISPTPTTRKSAFKR 1184

Query: 254  LNIFISHDK 263
            L++ ++ D+
Sbjct: 1185 LSVSVTRDQ 1193

[Close]
BLAST of Spg005014 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-18
Identity = 57/127 (44.88%), Postives = 82/127 (64.57%), Query Frame = 0 

Query: 14  KKRFRQIEDVDGGWTLVTRRKNRKQNWVQKESRLFQEHKIKGKSRRKNGKKYMRRLKPIL 73
           K+  +Q+++V+ GWTLVTRRK RKQ++ QKES  ++ ++ KGKS+R+N +K  R+  PI+
Sbjct: 563 KEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRNTRKNPRKFLPII 622

Query: 74  EENEEHIQPPHPITLKEFFPRTFLAGINQIVTCHVVDVTEDDNATSTTSEAIMNLEDLPS 133
           EE+E   +P  PI LK+FFP+ F     +IV+CH    TE+D   S   E     EDL  
Sbjct: 623 EESEGLSRPRRPIILKDFFPKNFPM---EIVSCHTTSTTEEDACPSNAMEETPKPEDLLP 682

Query: 134 FNIDDLL 141
             I+DLL
Sbjct: 683 LGINDLL 686


HSP 2 Score: 128.6 bits (322), Expect = 6.8e-26
Identity = 68/129 (52.71%), Postives = 94/129 (72.87%), Query Frame = 0 

Query: 134  FNIDDLLAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIG 193
            ++I +  AG+GY+S EPVRIT KGKAKVA+T HITVEE  DSE+ K+    R+S FDRI 
Sbjct: 1043 YSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEESKDSEEGKKVRSQRSSVFDRIA 1102

Query: 194  PSVTRSSVFQRLSTAAIEDESQHPTYGSTRPSAFQRLSMASEEKENVHSTPTTRLSAFQR 253
             S  R SVFQR+ST+  +D +Q  T  STR SAFQRL+ ++++  ++  TPTTR SAF+R
Sbjct: 1103 FSAIRPSVFQRVSTSIAKDSNQVSTCSSTRLSAFQRLNTSAKKVRSISPTPTTRKSAFKR 1162

Query: 254  LNIFISHDK 263
            L++ ++ D+
Sbjct: 1163 LSVSVTRDQ 1171

[Close]
BLAST of Spg005014 vs. ExPASy TrEMBL
Match: A0A5D3BIH8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001270 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-18
Identity = 57/127 (44.88%), Postives = 82/127 (64.57%), Query Frame = 0 

Query: 14  KKRFRQIEDVDGGWTLVTRRKNRKQNWVQKESRLFQEHKIKGKSRRKNGKKYMRRLKPIL 73
           K+  +Q+++V+ GWTLVTRRK RKQ++ QKES  ++ ++ KGKS+R+N +K  R+  PI+
Sbjct: 541 KEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRNTRKNPRKFLPII 600

Query: 74  EENEEHIQPPHPITLKEFFPRTFLAGINQIVTCHVVDVTEDDNATSTTSEAIMNLEDLPS 133
           EE+E   +P  PI LK+FFP+ F     +IV+CH    TE+D   S   E     EDL  
Sbjct: 601 EESEGLSRPRRPIILKDFFPKNFPM---EIVSCHTTSTTEEDACPSNAMEETPKPEDLLP 660

Query: 134 FNIDDLL 141
             I+DLL
Sbjct: 661 LGINDLL 664


HSP 2 Score: 128.6 bits (322), Expect = 6.8e-26
Identity = 68/129 (52.71%), Postives = 94/129 (72.87%), Query Frame = 0 

Query: 134  FNIDDLLAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIG 193
            ++I +  AG+GY+S EPVRIT KGKAKVA+T HITVEE  DSE+ K+    R+S FDRI 
Sbjct: 995  YSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEESKDSEEGKKVRSQRSSVFDRIA 1054

Query: 194  PSVTRSSVFQRLSTAAIEDESQHPTYGSTRPSAFQRLSMASEEKENVHSTPTTRLSAFQR 253
             S  R SVFQR+ST+  +D +Q  T  STR SAFQRL+ ++++  ++  TPTTR SAF+R
Sbjct: 1055 FSAIRPSVFQRVSTSIAKDSNQVSTCSSTRLSAFQRLNTSAKKVRSISPTPTTRKSAFKR 1114

Query: 254  LNIFISHDK 263
            L++ ++ D+
Sbjct: 1115 LSVSVTRDQ 1123

[Close]
BLAST of Spg005014 vs. ExPASy TrEMBL
Match: A0A5D3D1E5 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004020 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-18
Identity = 57/127 (44.88%), Postives = 82/127 (64.57%), Query Frame = 0 

Query: 14  KKRFRQIEDVDGGWTLVTRRKNRKQNWVQKESRLFQEHKIKGKSRRKNGKKYMRRLKPIL 73
           K+  +Q+++V+ GWTLVTRRK RKQ++ QKES  ++ ++ KGKS+R+N +K  R+  PI+
Sbjct: 493 KEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRNTRKNPRKFLPII 552

Query: 74  EENEEHIQPPHPITLKEFFPRTFLAGINQIVTCHVVDVTEDDNATSTTSEAIMNLEDLPS 133
           EE+E   +P  PI LK+FFP+ F     +IV+CH    TE+D   S   E     EDL  
Sbjct: 553 EESEGLSRPRRPIILKDFFPKNFPM---EIVSCHTTSTTEEDACPSNAMEETPKPEDLLP 612

Query: 134 FNIDDLL 141
             I+DLL
Sbjct: 613 LGINDLL 616


HSP 2 Score: 128.6 bits (322), Expect = 6.8e-26
Identity = 68/129 (52.71%), Postives = 94/129 (72.87%), Query Frame = 0 

Query: 134 FNIDDLLAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIG 193
           ++I +  AG+GY+S EPVRIT KGKAKVA+T HITVEE  DSE+ K++   R+S FDRI 
Sbjct: 373 YSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEESKDSEEGKKDRSQRSSVFDRIA 432

Query: 194 PSVTRSSVFQRLSTAAIEDESQHPTYGSTRPSAFQRLSMASEEKENVHSTPTTRLSAFQR 253
            S  R SVFQR+ST   +D +Q  T  STR SAFQRL+ ++++  ++  TPTTR SAF+R
Sbjct: 433 FSAIRPSVFQRVSTWITKDSNQVSTCSSTRLSAFQRLNTSAKKVRSISPTPTTRKSAFKR 492

Query: 254 LNIFISHDK 263
           L++ ++ D+
Sbjct: 493 LSVSVTRDQ 501

[Close]
BLAST of Spg005014 vs. ExPASy TrEMBL
Match: A0A5D3C783 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00570 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-25
Identity = 67/129 (51.94%), Postives = 93/129 (72.09%), Query Frame = 0 

Query: 134 FNIDDLLAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIG 193
           ++I +  AG+GY S EPVRIT KGK KVA+T HITVEE  DSE+ K++   R+S FDRI 
Sbjct: 820 YSIPNSRAGIGYHSSEPVRITGKGKVKVANTCHITVEESKDSEEGKKDRSQRSSVFDRIA 879

Query: 194 PSVTRSSVFQRLSTAAIEDESQHPTYGSTRPSAFQRLSMASEEKENVHSTPTTRLSAFQR 253
            S  R SVFQR+ST+  +D +Q  T  STR SAFQRL+ ++++  ++  TPTTR SAF+R
Sbjct: 880 FSAIRPSVFQRVSTSIAKDSNQVSTCSSTRLSAFQRLNTSAKKVRSISPTPTTRKSAFKR 939

Query: 254 LNIFISHDK 263
           L++ ++ D+
Sbjct: 940 LSVSVTRDQ 948

The following BLAST results are available for this feature:
BLAST of Spg005014 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ98225.11.4e-2552.71uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa][more]
TYJ98225.14.8e-1844.88uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa][more]
KAA0047477.14.8e-1844.88uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa][more]
TYK18071.11.4e-2552.71uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa][more]
TYK18071.14.8e-1844.88uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa][more]
BLAST of Spg005014 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg005014 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TZU96.8e-2652.71Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940... [more]
A0A5A7TZU92.3e-1844.88Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940... [more]
A0A5D3BIH82.3e-1844.88Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D1E52.3e-1844.88Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00402... [more]
A0A5D3C7831.2e-2551.94Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00570... [more]
BLAST of Spg005014 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg005014.1Spg005014.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0140640 catalytic activity, acting on a nucleic acid
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003676 nucleic acid binding