Spg005012 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005012
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold4: 11111653 .. 11112301 (-)
RNA-Seq Expression	Spg005012
Synteny	Spg005012

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCACTTTCTCAAGAAAAAACTGATGCCAACAACCCACGACAGCACCATTTCAGTAGAGAGAGTCATGCTCCTCTACAATATTATGAAGGGTTTGGAGATCAACATTGGGAGCATTATCAGGGAGGAAATCCTTGCCTGTGGAAGGAAGAAAGCAGGGAAGCTTTTCTTTGGGTCACTGATCACCCAACTATGCTAGAGGGTGAAGATAATCCCTGGTAAGGATGAGGAGCGTCACTTCTTCAGGCCTACCATCGACCTGTCCTTGATCAGGAAGCTTCAACAGAATAACGTCCAAAGAAAAGACAAAGCTTCCACATCTCAAGCCACTCCACCATCAGAGCTGAATCTGGCTTCTCCACCTCAACACACTCCTTTTTCAGAGCCCTCACCGTCATCTAAAGCCCTAGCAATTGCCTACCAACAACTGGATCAAATCAGGGACAACTTGAGGACTTATTGGGCATATGCCAAGGAGAGAGATGAAGCCATTAGTGAGTTTTAGCTCTCTATCGCCCCAAGTATTGCTCCTGTCTTTCCTGATTTCCCCTAATCGTTGCTGCCTCAAGAAGAAAAGGATTATGATGATGAAGATGAAGATGAAAATGAAGATGAAGAGAGAGAGAGTTCCTTGGATGAGGACTAG

mRNA sequence

ATGGCTTCACTTTCTCAAGAAAAAACTGATGCCAACAACCCACGACAGCACCATTTCAGTAGAGAGAGTCATGCTCCTCTACAATATTATGAAGGGTTTGGAGATCAACATTGGGAGCATTATCAGGGAGGAAATCCTTGCCTGTGGAAGGAAGAAAGCAGGGAAGCTTTTCTTTGGGTCACTGATCACCCAACTATGCTAGAGGGTGAAGATAATCCCTGGAAGCTTCAACAGAATAACGTCCAAAGAAAAGACAAAGCTTCCACATCTCAAGCCACTCCACCATCAGAGCTGAATCTGGCTTCTCCACCTCAACACACTCCTTTTTCAGAGCCCTCACCGTCATCTAAAGCCCTAGCAATTGCCTACCAACAACTGGATCAAATCAGGGACAACTTGAGGACTTATTGGGCATATGCCAAGGAGAGAGATGAAGCCATTAAAAAGGATTATGATGATGAAGATGAAGATGAAAATGAAGATGAAGAGAGAGAGAGTTCCTTGGATGAGGACTAG

Coding sequence (CDS)

ATGGCTTCACTTTCTCAAGAAAAAACTGATGCCAACAACCCACGACAGCACCATTTCAGTAGAGAGAGTCATGCTCCTCTACAATATTATGAAGGGTTTGGAGATCAACATTGGGAGCATTATCAGGGAGGAAATCCTTGCCTGTGGAAGGAAGAAAGCAGGGAAGCTTTTCTTTGGGTCACTGATCACCCAACTATGCTAGAGGGTGAAGATAATCCCTGGAAGCTTCAACAGAATAACGTCCAAAGAAAAGACAAAGCTTCCACATCTCAAGCCACTCCACCATCAGAGCTGAATCTGGCTTCTCCACCTCAACACACTCCTTTTTCAGAGCCCTCACCGTCATCTAAAGCCCTAGCAATTGCCTACCAACAACTGGATCAAATCAGGGACAACTTGAGGACTTATTGGGCATATGCCAAGGAGAGAGATGAAGCCATTAAAAAGGATTATGATGATGAAGATGAAGATGAAAATGAAGATGAAGAGAGAGAGAGTTCCTTGGATGAGGACTAG

Protein sequence

MASLSQEKTDANNPRQHHFSRESHAPLQYYEGFGDQHWEHYQGGNPCLWKEESREAFLWVTDHPTMLEGEDNPWKLQQNNVQRKDKASTSQATPPSELNLASPPQHTPFSEPSPSSKALAIAYQQLDQIRDNLRTYWAYAKERDEAIKKDYDDEDEDENEDEERESSLDED

Homology

The following BLAST results are available for this feature:

BLAST of Spg005012 vs.


Match Name	E-value	Identity	Description

BLAST of Spg005012 vs.


Match Name	E-value	Identity	Description

BLAST of Spg005012 vs.


Match Name	E-value	Identity	Description

BLAST of Spg005012 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005012.1	Spg005012.1	mRNA