Spg004996 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004996
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold4: 11228589 .. 11230861 (-)
RNA-Seq Expression	Spg004996
Synteny	Spg004996

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCACGTGGACAAGATCGGGGACAAGGTCGTGGACGTGGACGCGGACGTGGCCGTGGTAGGGGTGGCAGAGGCCTGGCACTCCCGGAGCAAGTAGATCCTCCTATGGATCAGTATGATGAAGATCTCCCTGATGAGCAAGCTCCTGCAGCTCCAACACCGATGCAGACTGTCACTCTGACTTTAGAGGCTCTTCAGGCACTTATGAATAATGTCGTTGCCAAATCAGGCACCCCAAGCGAACCAAAATGAGGATCAGGGTCAGACGGGCTCAACTGTGAGGGCTCGGTGTCTTAAGGATTTTAAGAAGTATGATCCACCAACATTTAGCGGGAAGATCGTAGACCTACGGAGGCTGAAGCTTGGACCGCTACAATCGAAGAGATTTTTCACTATATGGGATGCCCTGAGGCGCAACAGGTGTCGTGCACGGTATTTATGCTAAGAAACGATGCCCTGTTGTGGTGGAGATCGGCTGAGAGATCCATTGATGTAAGTGCTGGACCGGTTACTTGGTTGCAGTTCAAGGAGGCATTCTTCCAAAAATATTACTCGACCATTATCAGGTACAGAAAGGAGAAGGAGTTCCTAACCTTGACGCAAGGAGAGAAGTCAGTAGAAGAATACAAGCTAGAGTTCACCCGACTGTCTCATTTCTCCCTTGAAGTAGTGGATACGGAGGCGAAGAAGACAAAGAGGTTCATCTTGGGCCTCAGAGATGACGTCCAGAGGGTTGTTGGAGCCCTTGGCCAAGCAAACTACGCAGCGGCCCTTCGAGCAACCACCTTTATGGGCATGCCAATTGTCAATGCAACTCCAGTAACCAAGGAGTCGGAGCCCAATGCAGGACATAAGAGGAAACACGAGCAGACAACTGCTAACTCCCAGCGATCTCAACACTCATCCGAAAGCTCTAGACAGAAAACTCAGAATGGCAAACAAGAGGGTAATGGAAGCGATAAACCAAAGTGCAACTCTTGTGGAAGACGTCATTGGGGTCAGTGCATGGCAGGGAAAGGTGTGTGTTTCAGATGTCACAAGGAAGGGCATATGGCAAATAACTGCCCTAAGAAGAATGCAGGAGGCTCGTGAAGAAAGACCTTAGTAGTTACTTCTGTTTTAATTGCTTTGTTTGTCAAGATGAGACTCTAGTTATTGTTTTGTTCTTTTAGTTTGTTTAGCTTTATTTTTCTTTAAGTGTTATGTTTGAATCCTGAGATAGCGGATCATTTTCCCTATTCTCCATTGCTTTTGAATTAATAGAAATGAGATAAATAAAGTATGTTTAGTTTGATGTTTCTTTTCTTCTTCTAGCAGTAGCTTGTGATTTATGTCGTTATGCTTCCAAAATTTTCGGAGCATTCGGTTAATATTAAGATAGAAGTTTAAGTAATGTCGCTAAGATGGGTATAGAACTTGGGCATTTCATTTACTCAGTTTAGCACATTCCTTCGGAGTATGCATACTTCCTTAGGAAATAAGTGAGCATGGTTATGTTTTAAAGGAGATGAGAATCAAGTGTCTAAGAGCTCTTCCAGGACCAACAACTTTCGAGGACGAAAGTTCTTAACGGGGGAAGATTGTAACGCCCGTAATTTGAGATAAATTTCAAAATTTCCTAAGTTGGAATTAATTTTGAATTTAGAGGGAAATTTTCAAAAGAATAAATATTTGAAAATTAGTGGAAAAATAGGATTTATCTAGATCTTTTTGTTTCCTTACAGGAAAATGATGAAAGGTGGCATTTTTGTAAATATTTTGAAGTTGGAGCAAAACCATAAGCCTTCATTCTTTTTATTTAAAGCTGCACGCAGCCCAAGAGGAGCCATCTAAGCCACCATCTTCTTCCTTCTCCTCTCCCAATCACGAAACTTTCAGCCTTCTTCCCTATATCCTTCCTTCTCTTCTCCACGGCAGCCTCACTCCAGCAGCTCACCGACGACGTCAGCTTTTTTCCCTCCGGCGAGCAGGCCGTCTTCTCCGGCAACAGCGAGCAGTCCGGCGGCGAAGGCAGTGCAGTCCGGCGGCGTCTTCAGAAGCTACGGCAGGGGAGTTTTTCGGGATTTTTCACTCGTGTCGGGCGTTTATGCTCCATCTGCGGCATCTCCTTCTTCGTGCAGCGTGGGTCTCGGGCTGAGAGCGTTCTCCGGCGGATTCAGGCGGCGGGTGCGGCGGTGCAACATGTTTTCCGGCGCGGCGATGTTGAAGGCGCAATTTTCCCAAATTTCAACTCGTTTCGTGGGGTTTTAGCTAATTCCAGCATTGGGTAA

mRNA sequence

ATGCCTCCACGTGGACAAGATCGGGGACAAGGTCGTGGACGTGGACGCGGACGTGGCCGTGGTAGGGGTGGCAGAGGCCTGGCACTCCCGGAGCAAGTAGATCCTCCTATGGATCAGTATGATGAAGATCTCCCTGATGAGCAAGCTCCTGCAGCTCCAACACCGATGCAGACTGACATAAGAGGAAACACGAGCAGACAACTGCTAACTCCCAGCGATCTCAACACTCATCCGAAAGCTCTAGACAGAAAACTCAGAATGGCAAACAAGAGGGTAATGGAAGCGATAAACCAAAGTGCAACTCTTGTGGAAGACGTCATTGGGGTCAGTGCATGGCAGGGAAAGGTGTGTGTTTCAGATGTCACAAGGAAGGGCATATGGCAAATAACTGCCCTAAGAAGAATGCAGGAGGCTCCCTCACTCCAGCAGCTCACCGACGACGTCAGCTTTTTTCCCTCCGGCGAGCAGGCCGTCTTCTCCGGCAACAGCGAGCAGTCCGGCGGCGAAGGCAGTGCAGTCCGGCGGCGTCTTCAGAAGCTACGGCAGGGGAGTTTTTCGGGATTTTTCACTCGTGTCGGGCGTTTATGCTCCATCTGCGGCATCTCCTTCTTCGTGCAGCGTGGGTCTCGGGCTGAGAGCGTTCTCCGGCGGATTCAGGCGGCGGGTGCGGCGGTGCAACATGTTTTCCGGCGCGGCGATGTTGAAGGCGCAATTTTCCCAAATTTCAACTCGTTTCGTGGGGTTTTAGCTAATTCCAGCATTGGGTAA

Coding sequence (CDS)

ATGCCTCCACGTGGACAAGATCGGGGACAAGGTCGTGGACGTGGACGCGGACGTGGCCGTGGTAGGGGTGGCAGAGGCCTGGCACTCCCGGAGCAAGTAGATCCTCCTATGGATCAGTATGATGAAGATCTCCCTGATGAGCAAGCTCCTGCAGCTCCAACACCGATGCAGACTGACATAAGAGGAAACACGAGCAGACAACTGCTAACTCCCAGCGATCTCAACACTCATCCGAAAGCTCTAGACAGAAAACTCAGAATGGCAAACAAGAGGGTAATGGAAGCGATAAACCAAAGTGCAACTCTTGTGGAAGACGTCATTGGGGTCAGTGCATGGCAGGGAAAGGTGTGTGTTTCAGATGTCACAAGGAAGGGCATATGGCAAATAACTGCCCTAAGAAGAATGCAGGAGGCTCCCTCACTCCAGCAGCTCACCGACGACGTCAGCTTTTTTCCCTCCGGCGAGCAGGCCGTCTTCTCCGGCAACAGCGAGCAGTCCGGCGGCGAAGGCAGTGCAGTCCGGCGGCGTCTTCAGAAGCTACGGCAGGGGAGTTTTTCGGGATTTTTCACTCGTGTCGGGCGTTTATGCTCCATCTGCGGCATCTCCTTCTTCGTGCAGCGTGGGTCTCGGGCTGAGAGCGTTCTCCGGCGGATTCAGGCGGCGGGTGCGGCGGTGCAACATGTTTTCCGGCGCGGCGATGTTGAAGGCGCAATTTTCCCAAATTTCAACTCGTTTCGTGGGGTTTTAGCTAATTCCAGCATTGGGTAA

Protein sequence

MPPRGQDRGQGRGRGRGRGRGRGGRGLALPEQVDPPMDQYDEDLPDEQAPAAPTPMQTDIRGNTSRQLLTPSDLNTHPKALDRKLRMANKRVMEAINQSATLVEDVIGVSAWQGKVCVSDVTRKGIWQITALRRMQEAPSLQQLTDDVSFFPSGEQAVFSGNSEQSGGEGSAVRRRLQKLRQGSFSGFFTRVGRLCSICGISFFVQRGSRAESVLRRIQAAGAAVQHVFRRGDVEGAIFPNFNSFRGVLANSSIG

Homology

The following BLAST results are available for this feature:

BLAST of Spg004996 vs.


Match Name	E-value	Identity	Description

BLAST of Spg004996 vs.


Match Name	E-value	Identity	Description

BLAST of Spg004996 vs.


Match Name	E-value	Identity	Description

BLAST of Spg004996 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004996.1	Spg004996.1	mRNA