Spg004980 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004980
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	F-box domain containing protein
Location	scaffold4: 10241006 .. 10242479 (-)
RNA-Seq Expression	Spg004980
Synteny	Spg004980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGAAACAGAGCATTGCTTCAGCGCGAGACCGAGTGGTTACGAGATCTCAATCCATTGCTATGGAGCGTGAAAAGATTTCGAAGCGATCATCGCCAAATCCAGTTGTTGCTGTGGAGCCGGAAGGACTGGTAAAGCGAATGCGAAGAGATATTAAGCCCATTCATTCTTGCAGCTCTCCTCGTTCCGCTTTTCTTACTGTGCATTCCTCTGCTTCATCCTCTGCGTCTTCATCTTCGTACTGGTTCGTTCTCTTTCTCTTTTCTGTTTCCATCCTGATAATCGCTGTTCGTAGGTAATTTCAGTTCTGATACGAGTTTCGCGCGTAAAAACTTGTCTACCTGTTGAGGAGAATGCCTTTGTGTTTTCTAACGTATCGTGATAATGAAGAAATTCGATTTTGTTTTTCTAGAAGTGATTTGAATTACTTAGTTCAAAAATTGTGATGTGAAGTTATTTCCTCGACTTTAGGCTCTTTGAGCTCGATTGTGTAGTCGCAAATGTTTAGTACTGCCATGGACTTCGAAGTAGAAAGAAATGAATAATTCGAGTTGTTTTCTATGAGGTTCCGAAGCTAAAAGTGAAGGTCAGAAGAGTTGAATCTATGTCTATCGCAGCATAAACTTGTTCCTTCTTTTTCTCCATCAGGAGAAGACGAAGAAGAAGAAACGTTAAGTAATGTGATCTTAGGATTTGCAAATAGAATGTGACAATCTTTGTCGGAAATCACTACGAGTTGATAAACACTCACTGGATCTCTAAAAAATTTGATCGTCAGTACATTTTGTAGTATAAATAGTACTGCCAATTCTTCAGTATAGTTTTGAAGTGTTTATTTGTCACAGGATCGAAGTAGTTTCAGGACTCTTTCTATCTGAAGCTAGTTCAGTGTTTACATTTTTTACTTTTCATCGCATTAAGTATTCCGAGTCCGCTAGTTTTCTTTTTAATTTCATCTTTTACTTTTCTATGTTGATGTTTGATTCTACTTCTAAGATTTCGAAAATGTGATTGTTCTATCTTGTATACATTCAATTTTAAATCAGTTTTTAATTTAGTAACCGGAAGCTTTGTTTATTCAGCCATTAGGCTGACTTAAGTTTGGCGGGATTAAGATTGATGGATCATAGAGATTATACATTGTTTTTATCAATTTGAATATTTCAACGGCAACAAAGCTTTAACCTTCCGTATGAATTAATTTCCGCGAATGAACATGAAAGGTACGACGCGGACGTGTGGACAGAGGTGGCGAAGTTTCTGGATGGAAGATCTTTGATAATGCTTGCGGCGACTAGTCGGTGGTTTTACCGTTTAGTCATGGAAGACAGCATATGGAAGTATGTTTGCCTGCGTGATCTTCAGGTCCCTGCTCCTCAATATACGGCCTTCAAATGGATCAAACTCTACGTTTCTGCCTTCGGTAAGGATCGGGTTCGAGTTCTCCGAGTTGTGTTCCTGCTCTGGTGA

mRNA sequence

ATGGGGAAGAAACAGAGCATTGCTTCAGCGCGAGACCGAGTGGTTACGAGATCTCAATCCATTGCTATGGAGCGTGAAAAGATTTCGAAGCGATCATCGCCAAATCCAGTTGTTGCTGTGGAGCCGGAAGGACTGGTAAAGCGAATGCGAAGAGATATTAAGCCCATTCATTCTTGCAGCTCTCCTCGTTCCGCTTTTCTTACTGTGCATTCCTCTGCTTCATCCTCTGCGTCTTCATCTTCGTACTGGTTCGTTCTCTTTCTCTTTTCTGTTTCCATCCTGATAATCGCTGTTCGTAGGTACGACGCGGACGTGTGGACAGAGGTGGCGAAGTTTCTGGATGGAAGATCTTTGATAATGCTTGCGGCGACTAGTCGGTGGTTTTACCGTTTAGTCATGGAAGACAGCATATGGAAGTATGTTTGCCTGCGTGATCTTCAGGTCCCTGCTCCTCAATATACGGCCTTCAAATGGATCAAACTCTACGTTTCTGCCTTCGGTAAGGATCGGGTTCGAGTTCTCCGAGTTGTGTTCCTGCTCTGGTGA

Coding sequence (CDS)

ATGGGGAAGAAACAGAGCATTGCTTCAGCGCGAGACCGAGTGGTTACGAGATCTCAATCCATTGCTATGGAGCGTGAAAAGATTTCGAAGCGATCATCGCCAAATCCAGTTGTTGCTGTGGAGCCGGAAGGACTGGTAAAGCGAATGCGAAGAGATATTAAGCCCATTCATTCTTGCAGCTCTCCTCGTTCCGCTTTTCTTACTGTGCATTCCTCTGCTTCATCCTCTGCGTCTTCATCTTCGTACTGGTTCGTTCTCTTTCTCTTTTCTGTTTCCATCCTGATAATCGCTGTTCGTAGGTACGACGCGGACGTGTGGACAGAGGTGGCGAAGTTTCTGGATGGAAGATCTTTGATAATGCTTGCGGCGACTAGTCGGTGGTTTTACCGTTTAGTCATGGAAGACAGCATATGGAAGTATGTTTGCCTGCGTGATCTTCAGGTCCCTGCTCCTCAATATACGGCCTTCAAATGGATCAAACTCTACGTTTCTGCCTTCGGTAAGGATCGGGTTCGAGTTCTCCGAGTTGTGTTCCTGCTCTGGTGA

Protein sequence

MGKKQSIASARDRVVTRSQSIAMEREKISKRSSPNPVVAVEPEGLVKRMRRDIKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRRYDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLRVVFLLW

Homology

[Close]

BLAST of Spg004980 vs. NCBI nr
Match: KAG6575300.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 259.2 bits (661), Expect = 2.6e-65
Identity = 140/175 (80.00%), Postives = 145/175 (82.86%), Query Frame = 0


Query: 1   MGKKQSIASARDRVVTRSQSIAMEREKISKRSSPNPVVAVEPEGLVKRMRRDIKPIHSCS 60
           MGKK SIASARDRVVTRSQSIAMEREKIS  SSPNPVVAVEPEG+VKRMRRDIKPIHSCS
Sbjct: 1   MGKKLSIASARDRVVTRSQSIAMEREKIS--SSPNPVVAVEPEGMVKRMRRDIKPIHSCS 60

Query: 61  SPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRRYDADVWTEVAKFLDGRSLIM 120
           SPRS FLT HSSASSSASSS+ W                 YDADVWTEVAKFLDGRSL+M
Sbjct: 61  SPRSTFLTAHSSASSSASSSACW-----------------YDADVWTEVAKFLDGRSLMM 120

Query: 121 LAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR 176
           LAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQ+TAFKWIKLYVSAF      + R
Sbjct: 121 LAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQHTAFKWIKLYVSAFDGSHSYIFR 156

[Close]

BLAST of Spg004980 vs. NCBI nr
Match: XP_023548391.1 (probable F-box protein At3g61730 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.2 bits (661), Expect = 2.6e-65
Identity = 140/175 (80.00%), Postives = 145/175 (82.86%), Query Frame = 0


Query: 1   MGKKQSIASARDRVVTRSQSIAMEREKISKRSSPNPVVAVEPEGLVKRMRRDIKPIHSCS 60
           MGKK SIASARDRVVTRSQSIAMEREKIS  SSPNPVVAVEPEG+VKRMRRDIKPIHSCS
Sbjct: 1   MGKKLSIASARDRVVTRSQSIAMEREKIS--SSPNPVVAVEPEGMVKRMRRDIKPIHSCS 60

Query: 61  SPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRRYDADVWTEVAKFLDGRSLIM 120
           SPRS FLT HSSASSSASSS+ W                 YDADVWTEVAKFLDGRSL+M
Sbjct: 61  SPRSTFLTAHSSASSSASSSACW-----------------YDADVWTEVAKFLDGRSLMM 120

Query: 121 LAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR 176
           LAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQ+TAFKWIKLYVSAF      + R
Sbjct: 121 LAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQHTAFKWIKLYVSAFDGSHSYIFR 156

[Close]

BLAST of Spg004980 vs. NCBI nr
Match: XP_038875515.1 (probable F-box protein At3g61730 [Benincasa hispida])

HSP 1 Score: 258.5 bits (659), Expect = 4.4e-65
Identity = 139/175 (79.43%), Postives = 143/175 (81.71%), Query Frame = 0


Query: 1   MGKKQSIASARDRVVTRSQSIAMEREKISKRSSPNPVVAVEPEGLVKRMRRDIKPIHSCS 60
           MGKK SIASARDRVVTRS SIAMER K+SKRSSPN VVA EPEG VKRMRRDIKPIHSCS
Sbjct: 1   MGKKLSIASARDRVVTRSLSIAMERAKMSKRSSPNSVVAAEPEGTVKRMRRDIKPIHSCS 60

Query: 61  SPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRRYDADVWTEVAKFLDGRSLIM 120
           SPRSAFLT HSSASSSASSSS W                 YDADVWTEVAKFLDGRSL+M
Sbjct: 61  SPRSAFLTAHSSASSSASSSSCW-----------------YDADVWTEVAKFLDGRSLMM 120

Query: 121 LAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR 176
           LAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQ+TAFKWIKLYVSAF      + R
Sbjct: 121 LAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQHTAFKWIKLYVSAFDGSHSYIFR 158

[Close]

BLAST of Spg004980 vs. NCBI nr
Match: XP_004140675.1 (probable F-box protein At3g61730 [Cucumis sativus] >KGN46347.1 hypothetical protein Csa_005078 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 2.2e-64
Identity = 138/176 (78.41%), Postives = 145/176 (82.39%), Query Frame = 0


Query: 1   MGKKQSIASARDRVVTRSQSIAMEREKISKRSSP-NPVVAVEPEGLVKRMRRDIKPIHSC 60
           MGKK SIASARDRVVTRSQSI+MER K++KRSSP NPVVA EPEG+VKRMRRDIKPIHSC
Sbjct: 1   MGKKLSIASARDRVVTRSQSISMERAKMTKRSSPKNPVVAAEPEGMVKRMRRDIKPIHSC 60

Query: 61  SSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRRYDADVWTEVAKFLDGRSLI 120
           SSPRSAFLT HSSASSSASSSS W                 YDADVWTEVAKFLDGRSL+
Sbjct: 61  SSPRSAFLTAHSSASSSASSSSCW-----------------YDADVWTEVAKFLDGRSLM 120

Query: 121 MLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR 176
           MLAATSRWFYR VMEDSIWKYVCLRDLQVPAPQ+TAFKWIKLYVSAF      + R
Sbjct: 121 MLAATSRWFYRSVMEDSIWKYVCLRDLQVPAPQHTAFKWIKLYVSAFDGSHSYIFR 159

[Close]

BLAST of Spg004980 vs. NCBI nr
Match: TYK24589.1 (putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 255.0 bits (650), Expect = 4.9e-64
Identity = 138/177 (77.97%), Postives = 144/177 (81.36%), Query Frame = 0


Query: 1   MGKKQSIASARDRVVTRSQSIAMEREKISKRSSP--NPVVAVEPEGLVKRMRRDIKPIHS 60
           M KK SIASARDRVVTRSQSI+MER K+SKRSSP  NPVVA EPEG+VKRMRRDIKPIHS
Sbjct: 1   MAKKLSIASARDRVVTRSQSISMERAKMSKRSSPKNNPVVAAEPEGMVKRMRRDIKPIHS 60

Query: 61  CSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRRYDADVWTEVAKFLDGRSL 120
           CSSP SAFLT HSSASSSASSSS W                 YDADVWTEVAKFLDGRSL
Sbjct: 61  CSSPHSAFLTAHSSASSSASSSSCW-----------------YDADVWTEVAKFLDGRSL 120

Query: 121 IMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR 176
           +MLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQ+TAFKWIKLYVSAF      + R
Sbjct: 121 MMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQHTAFKWIKLYVSAFDGSHSYIFR 160

[Close]

BLAST of Spg004980 vs. ExPASy Swiss-Prot
Match: Q9M365 (Probable F-box protein At3g61730 OS=Arabidopsis thaliana OX=3702 GN=RMF PE=1 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 2.9e-19
Identity = 36/66 (54.55%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 101 YDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIK 160
           Y+ D+WT +++FLDG+SL+ L AT++WFY++ MED++W++ CLRDLQVP P   +  WIK
Sbjct: 88  YEQDIWTYISRFLDGKSLVKLGATNKWFYKIAMEDTVWRFACLRDLQVPVPFPVSSTWIK 147

Query: 161 LYVSAF 167
           +Y SAF
Sbjct: 148 IYASAF 153

[Close]

BLAST of Spg004980 vs. ExPASy Swiss-Prot
Match: Q9FGB8 (Probable F-box protein At5g36000 OS=Arabidopsis thaliana OX=3702 GN=At5g36000 PE=2 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 5.5e-18
Identity = 45/114 (39.47%), Postives = 64/114 (56.14%), Query Frame = 0


Query: 53  IKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRRYDADVWTEVAKF 112
           ++ IH C SPR +  T  S  S        W                 Y+ D+WT + +F
Sbjct: 61  LRGIHGCVSPRCSAPTYQSRFS--------W-----------------YEQDIWTYITRF 120

Query: 113 LDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAF 167
           LDG+SL+ L AT++WFY++ MED++W++ CLRDLQVP     +  WIK+Y SAF
Sbjct: 121 LDGKSLVKLGATNKWFYKIAMEDTVWRFACLRDLQVPETFPVSSTWIKIYASAF 149

[Close]

BLAST of Spg004980 vs. ExPASy TrEMBL
Match: A0A0A0KD88 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087760 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 1.1e-64
Identity = 138/176 (78.41%), Postives = 145/176 (82.39%), Query Frame = 0


Query: 1   MGKKQSIASARDRVVTRSQSIAMEREKISKRSSP-NPVVAVEPEGLVKRMRRDIKPIHSC 60
           MGKK SIASARDRVVTRSQSI+MER K++KRSSP NPVVA EPEG+VKRMRRDIKPIHSC
Sbjct: 1   MGKKLSIASARDRVVTRSQSISMERAKMTKRSSPKNPVVAAEPEGMVKRMRRDIKPIHSC 60

Query: 61  SSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRRYDADVWTEVAKFLDGRSLI 120
           SSPRSAFLT HSSASSSASSSS W                 YDADVWTEVAKFLDGRSL+
Sbjct: 61  SSPRSAFLTAHSSASSSASSSSCW-----------------YDADVWTEVAKFLDGRSLM 120

Query: 121 MLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR 176
           MLAATSRWFYR VMEDSIWKYVCLRDLQVPAPQ+TAFKWIKLYVSAF      + R
Sbjct: 121 MLAATSRWFYRSVMEDSIWKYVCLRDLQVPAPQHTAFKWIKLYVSAFDGSHSYIFR 159

[Close]

BLAST of Spg004980 vs. ExPASy TrEMBL
Match: A0A5D3DMQ8 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001350 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.4e-64
Identity = 138/177 (77.97%), Postives = 144/177 (81.36%), Query Frame = 0


Query: 1   MGKKQSIASARDRVVTRSQSIAMEREKISKRSSP--NPVVAVEPEGLVKRMRRDIKPIHS 60
           M KK SIASARDRVVTRSQSI+MER K+SKRSSP  NPVVA EPEG+VKRMRRDIKPIHS
Sbjct: 1   MAKKLSIASARDRVVTRSQSISMERAKMSKRSSPKNNPVVAAEPEGMVKRMRRDIKPIHS 60

Query: 61  CSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRRYDADVWTEVAKFLDGRSL 120
           CSSP SAFLT HSSASSSASSSS W                 YDADVWTEVAKFLDGRSL
Sbjct: 61  CSSPHSAFLTAHSSASSSASSSSCW-----------------YDADVWTEVAKFLDGRSL 120

Query: 121 IMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR 176
           +MLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQ+TAFKWIKLYVSAF      + R
Sbjct: 121 MMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQHTAFKWIKLYVSAFDGSHSYIFR 160

[Close]

BLAST of Spg004980 vs. ExPASy TrEMBL
Match: A0A1S3CBL0 (probable F-box protein At3g61730 OS=Cucumis melo OX=3656 GN=LOC103498945 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 4.5e-55
Identity = 119/155 (76.77%), Postives = 124/155 (80.00%), Query Frame = 0


Query: 23  MEREKISKRSSP--NPVVAVEPEGLVKRMRRDIKPIHSCSSPRSAFLTVHSSASSSASSS 82
           MER K+SKRSSP  NPVVA EPEG+VKRMRRDIKPIHSCSSP SAFLT HSSASSSASSS
Sbjct: 1   MERAKMSKRSSPKNNPVVAAEPEGMVKRMRRDIKPIHSCSSPHSAFLTAHSSASSSASSS 60

Query: 83  SYWFVLFLFSVSILIIAVRRYDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKY 142
           S W                 YDADVWTEVAKFLDGRSL+MLAATSRWFYRLVMEDSIWKY
Sbjct: 61  SCW-----------------YDADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDSIWKY 120

Query: 143 VCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR 176
           VCLRDLQVPAPQ+TAFKWIKLYVSAF      + R
Sbjct: 121 VCLRDLQVPAPQHTAFKWIKLYVSAFDGSHSYIFR 138

[Close]

BLAST of Spg004980 vs. ExPASy TrEMBL
Match: A0A6J1DCT6 (probable F-box protein At3g61730 OS=Momordica charantia OX=3673 GN=LOC111019845 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 2.0e-50
Identity = 121/178 (67.98%), Postives = 130/178 (73.03%), Query Frame = 0


Query: 1   MGKKQSIASARDRVVTRSQSIAMEREKISKRSSPNPVVAVEPEG-LVKRMRRDIKP--IH 60
           MGKK SI+SARDRVVTRSQS AMERE++SKRS   P+ A EPEG + KR+RRD+K   IH
Sbjct: 1   MGKKLSISSARDRVVTRSQSSAMERERLSKRS---PIAAAEPEGVMAKRIRRDVKHPIIH 60

Query: 61  SCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRRYDADVWTEVAKFLDGRS 120
            CSSPRSAFLT        ASSSS W                 YDADVWTEVAKFLDGRS
Sbjct: 61  PCSSPRSAFLT--------ASSSSCW-----------------YDADVWTEVAKFLDGRS 120

Query: 121 LIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR 176
           L+MLAATSRWFYRLVMEDSIWKYVCLRDLQV APQ TAFKWIKLYVSAF      + R
Sbjct: 121 LMMLAATSRWFYRLVMEDSIWKYVCLRDLQVSAPQITAFKWIKLYVSAFDGSHSYIFR 150

[Close]

BLAST of Spg004980 vs. ExPASy TrEMBL
Match: A0A5A7TE30 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G001900 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.7e-30
Identity = 66/76 (86.84%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 100 RYDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWI 159
           RYDADVWTEVAKFLDGRSL+MLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQ+TAFKWI
Sbjct: 10  RYDADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQHTAFKWI 69

Query: 160 KLYVSAFGKDRVRVLR 176
           KLYVSAF      + R
Sbjct: 70  KLYVSAFDGSHSYIFR 85

[Close]

BLAST of Spg004980 vs. TAIR 10
Match: AT3G61730.1 (reduced male fertility )

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-20
Identity = 36/66 (54.55%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 101 YDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIK 160
           Y+ D+WT +++FLDG+SL+ L AT++WFY++ MED++W++ CLRDLQVP P   +  WIK
Sbjct: 88  YEQDIWTYISRFLDGKSLVKLGATNKWFYKIAMEDTVWRFACLRDLQVPVPFPVSSTWIK 147

Query: 161 LYVSAF 167
           +Y SAF
Sbjct: 148 IYASAF 153

[Close]

BLAST of Spg004980 vs. TAIR 10
Match: AT5G36000.1 (BEST Arabidopsis thaliana protein match is: reduced male fertility (TAIR:AT3G61730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 92.4 bits (228), Expect = 3.9e-19
Identity = 45/114 (39.47%), Postives = 64/114 (56.14%), Query Frame = 0


Query: 53  IKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRRYDADVWTEVAKF 112
           ++ IH C SPR +  T  S  S        W                 Y+ D+WT + +F
Sbjct: 61  LRGIHGCVSPRCSAPTYQSRFS--------W-----------------YEQDIWTYITRF 120

Query: 113 LDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAF 167
           LDG+SL+ L AT++WFY++ MED++W++ CLRDLQVP     +  WIK+Y SAF
Sbjct: 121 LDGKSLVKLGATNKWFYKIAMEDTVWRFACLRDLQVPETFPVSSTWIKIYASAF 149

The following BLAST results are available for this feature:

BLAST of Spg004980 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575300.1	2.6e-65	80.00	putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023548391.1	2.6e-65	80.00	probable F-box protein At3g61730 [Cucurbita pepo subsp. pepo]	[more]
XP_038875515.1	4.4e-65	79.43	probable F-box protein At3g61730 [Benincasa hispida]	[more]
XP_004140675.1	2.2e-64	78.41	probable F-box protein At3g61730 [Cucumis sativus] >KGN46347.1 hypothetical prot...	[more]
TYK24589.1	4.9e-64	77.97	putative F-box protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg004980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M365	2.9e-19	54.55	Probable F-box protein At3g61730 OS=Arabidopsis thaliana OX=3702 GN=RMF PE=1 SV=...	[more]
Q9FGB8	5.5e-18	39.47	Probable F-box protein At5g36000 OS=Arabidopsis thaliana OX=3702 GN=At5g36000 PE...	[more]

BLAST of Spg004980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD88	1.1e-64	78.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087760 PE=4 SV=1	[more]
A0A5D3DMQ8	2.4e-64	77.97	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A1S3CBL0	4.5e-55	76.77	probable F-box protein At3g61730 OS=Cucumis melo OX=3656 GN=LOC103498945 PE=4 SV...	[more]
A0A6J1DCT6	2.0e-50	67.98	probable F-box protein At3g61730 OS=Momordica charantia OX=3673 GN=LOC111019845 ...	[more]
A0A5A7TE30	1.7e-30	86.84	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1...	[more]

BLAST of Spg004980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61730.1	2.1e-20	54.55	reduced male fertility	[more]
AT5G36000.1	3.9e-19	39.47	BEST Arabidopsis thaliana protein match is: reduced male fertility (TAIR:AT3G617...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1280.50		coord: 98..170 e-value: 2.1E-6 score: 29.5
None	No IPR available	PANTHER	PTHR47149	F-BOX PROTEIN RMF	coord: 15..167
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 104..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004980.1	Spg004980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061458	reproductive system development
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016740	transferase activity